All Stories

  1. The Santorini Volcanic Complex as a Valuable Source of Enzymes for Bioenergy

    Article • Energies, March 2021, MDPI AG

    Dr Nikos C Kyrpides

  2. CheckV assesses the quality and completeness of metagenome-assembled viral genomes

    Article • Nature Biotechnology, December 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  3. Publisher Correction: A genomic catalog of Earth’s microbiomes

    Article • Nature Biotechnology, November 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides, Dr Susannah Green Tringe

  4. A genomic catalog of Earth’s microbiomes

    Article • Nature Biotechnology, November 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides, Dr Susannah Green Tringe

  5. Genomes OnLine Database (GOLD) v.8: overview and updates

    Article • Nucleic Acids Research, November 2020, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  6. IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses

    Article • Nucleic Acids Research, November 2020, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  7. Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil

    Article • Microbiology Resource Announcements, October 2020, ASM Journals

    Dr Nikos C Kyrpides

  8. The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

    Article • Nucleic Acids Research, October 2020, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  9. Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina)

    Article • Microbiology Resource Announcements, October 2020, ASM Journals

    Dr Nikos C Kyrpides

  10. The DOE JGI Metagenome Workflow

    Article • October 2020, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  11. Recombination should not be an afterthought

    Article • Nature Reviews Microbiology, September 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  12. Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism

    Article • mBio, September 2020, ASM Journals

    Dr Nikos C Kyrpides

  13. Isolation of potential plant growth-promoting bacteria from nodules of legumes grown in arid Botswana soil

    Article • September 2020, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  14. Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica

    Article • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, September 2020, Society for General Microbiology

    Dr Nikos C Kyrpides

  15. Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

    Article • Microbiome, August 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  16. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems

    Article • Molecular Cell, August 2020, Elsevier

    Dr Nikos C Kyrpides

  17. A unified catalog of 204,938 reference genomes from the human gut microbiome

    Article • Nature Biotechnology, July 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  18. Insights into the dynamics between viruses and their hosts in a hot spring microbial mat

    Article • The ISME Journal, July 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  19. COVID-19 pandemic reveals the peril of ignoring metadata standards

    Article • Scientific Data, June 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  20. Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation

    Article • Communications Biology, June 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  21. A synthesis of bacterial and archaeal phenotypic trait data

    Article • Scientific Data, June 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  22. Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

    Article • Nature Reports Stem Cells, June 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides, Maria Mercedes Zambrano

  23. CheckV: assessing the quality of metagenome-assembled viral genomes

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  24. Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug

    Article • Microbiology Resource Announcements, April 2020, ASM Journals

    Dr Nikos C Kyrpides

  25. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

    Article • Frontiers in Microbiology, April 2020, Frontiers

    Dr Nikos C Kyrpides

  26. Draft genome of Rosenbergiella nectarea strain 8N4T provides insights into the potential role of this species in its plant host

    Article • PeerJ, April 2020, PeerJ

    Dr Nikos C Kyrpides

  27. Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil

    Article • BMC Genomics, March 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  28. Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil

    Article • February 2020, Research Square

    Dr Nikos C Kyrpides

  29. Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil

    Article • February 2020, Research Square

    Dr Nikos C Kyrpides

  30. Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

    Article • Microbiome, February 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  31. Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes

    Article • Nature Microbiology, February 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  32. Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil

    Article • February 2020, Research Square

    Dr Nikos C Kyrpides

  33. One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil

    Article • Microbiology Resource Announcements, January 2020, ASM Journals

    Dr Nikos C Kyrpides

  34. Giant virus diversity and host interactions through global metagenomics

    Article • Nature, January 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  35. Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil

    Article • January 2020, Research Square

    Dr Nikos C Kyrpides

  36. Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

    Article • BMC Genomics, January 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides

  37. Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome

    Article • Microbiology Resource Announcements, January 2020, ASM Journals

    Dr Nikos C Kyrpides

  38. Finding salt-tolerant bacteria to promote crop growth.in arid saline soils of Pakistan.

    Article • Phytobiomes Journal, January 2020, Scientific Societies

    Professor Ann M. Hirsch, Dr Nikos C Kyrpides

  39. Establishment of computational biology in Greece and Cyprus: Past, present, and future

    Article • PLoS Computational Biology, December 2019, PLOS

    Dr Nikos C Kyrpides, Dr Vasilis J Promponas

  40. Genome analysis of the marine bacterium Kiloniella laminariae and first insights into comparative genomics with related Kiloniella species

    Article • Archives of Microbiology, December 2019, Springer Science + Business Media

    Dr Nikos C Kyrpides

  41. Diversity, evolution, and classification of virophages uncovered through global metagenomics

    Article • Microbiome, December 2019, Springer Science + Business Media

    PhD David Paez-Espino, Dr Nikos C Kyrpides, Dr Susannah Green Tringe

  42. High-quality draft genome sequences of Pseudomonas monteilii DSM 14164T, Pseudomonas mosselii DSM 17497T, Pseudomonas plecoglossicida DSM 15088T, Pseudomonas taiwanensis DSM 21245T and Pseudomonas vranovensis DSM 16006T: taxonomic considerations

    Article • Access Microbiology, December 2019, Society for General Microbiology

    Dr Nikos C Kyrpides

  43. Impact of soil salinity on the cowpea nodule-microbiome and the isolation of halotolerant PGPR strains to promote plant growth under salinity stress

    Article • November 2019, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides, Professor Ann M. Hirsch

  44. Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants

    Article • Microbiology Resource Announcements, November 2019, ASM Journals

    Dr Nikos C Kyrpides

  45. IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase

    Article • Nucleic Acids Research, October 2019, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  46. Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials

    Article • Scientific Data, October 2019, Springer Science + Business Media

    Dr Nikos C Kyrpides

  47. Characterisation of multiple heavy metal resistance loci in the genome of the novel species Cupriavidus neocaledonicus STM 6070, a nickel- and zinc-tolerant Mimosa pudica microsymbiont isolated from mining site soil

    Article • October 2019, Research Square

    Dr Nikos C Kyrpides

  48. Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

    Article • Frontiers in Microbiology, September 2019, Frontiers

    Dr Nikos C Kyrpides

  49. A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

    Article • September 2019, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  50. Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance

    Article • August 2019, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides, Maria Mercedes Zambrano

  51. Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes

    Article • Cell, August 2019, Elsevier

    Dr Nikos C Kyrpides

  52. Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot

    Article • Scientific Data, July 2019, Springer Science + Business Media

    Dr Nikos C Kyrpides

  53. Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes

    Article • Nature Microbiology, July 2019, Springer Science + Business Media

    Dr Nikos C Kyrpides

  54. Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

    Article • Scientific Data, July 2019, Springer Science + Business Media

    Dr Nikos C Kyrpides

  55. Genome-informed Bradyrhizobium taxonomy: where to from here?

    Article • Systematic and Applied Microbiology, July 2019, Elsevier

    Dr Nikos C Kyrpides

  56. Consent insufficient for data release—Response

    Article • Science, May 2019, American Association for the Advancement of Science

    Catherine Brooksbank, Antoine Danchin, Dr Nikos C Kyrpides

  57. Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source

    Article • Microbiology Resource Announcements, May 2019, ASM Journals

    Dr Nikos C Kyrpides

  58. Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat

    Article • Frontiers in Microbiology, April 2019, Frontiers

    Dr Nikos C Kyrpides

  59. Improved Draft Genome Sequence of Bacillus sp. Strain YF23, Which Has Plant Growth-Promoting Activity

    Article • Microbiology Resource Announcements, April 2019, ASM Journals

    Dr Nikos C Kyrpides

  60. Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity

    Article • Microbiology Resource Announcements, April 2019, ASM Journals

    Dr Nikos C Kyrpides

  61. Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium

    Article • Microbiology Resource Announcements, April 2019, ASM Journals

    Dr Nikos C Kyrpides

  62. Untapped viral diversity in global soil metagenomes

    Article • March 2019, Cold Spring Harbor Laboratory Press

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  63. New insights from uncultivated genomes of the global human gut microbiome

    Article • Nature, March 2019, Springer Science + Business Media

    Dr Nikos C Kyrpides

  64. Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources

    Article • Current Microbiology, February 2019, Springer Science + Business Media

    Dr Nikos C Kyrpides

  65. Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments

    Article • mSystems, February 2019, ASM Journals

    Dr Nikos C Kyrpides

  66. A Comparison of Microbial Genome Web Portals

    Article • Frontiers in Microbiology, February 2019, Frontiers

    Dr Nikos C Kyrpides

  67. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes

    Article • February 2019, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  68. A Functional Mini-Integrase in a Two-Protein Type V-C CRISPR System

    Article • Molecular Cell, February 2019, Elsevier

    Dr Nikos C Kyrpides

  69. Toward unrestricted use of public genomic data

    Article • Science, January 2019, American Association for the Advancement of Science

    Catherine Brooksbank, Antoine Danchin, Dr Nikos C Kyrpides

  70. Minimum Information about an Uncultivated Virus Genome (MIUViG)

    Article • Nature Biotechnology, December 2018, Springer Science + Business Media

    Dr Nikos C Kyrpides, Dr Jens H. Kuhn, Dr Susannah Green Tringe

  71. Large-scale analyses of human microbiomes reveal thousands of small, novel genes and their predicted functions

    Article • December 2018, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  72. The relevance of sequencing Actinobacterial genomes

    Article • Microbiology Resource Announcements, December 2018, ASM Journals

    Maria Mercedes Zambrano, Dr Nikos C Kyrpides

  73. IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes

    Article • Nucleic Acids Research, November 2018, Oxford University Press (OUP)

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  74. Genomes OnLine database (GOLD) v.7: updates and new features

    Article • Nucleic Acids Research, October 2018, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  75. Programmed DNA destruction by miniature CRISPR-Cas14 enzymes

    Article • Science, October 2018, American Association for the Advancement of Science

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  76. IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

    Article • Nucleic Acids Research, October 2018, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  77. Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants

    Article • Microbiology Resource Announcements, September 2018, ASM Journals

    Oleg Vasilenko, Dr Nikos C Kyrpides

  78. Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis

    Article • Microbiome, September 2018, Springer Science + Business Media

    Dr Nikos C Kyrpides

  79. Genome-Based Taxonomic Classification of the Phylum Actinobacteria

    Article • Frontiers in Microbiology, August 2018, Frontiers

    Dr Nikos C Kyrpides

  80. Murine colitis reveals a disease-associated bacteriophage community

    Article • Nature Microbiology, July 2018, Springer Science + Business Media

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  81. Genome-based evolutionary history of Pseudomonas spp

    Article • Environmental Microbiology, July 2018, Wiley

    Dr Nikos C Kyrpides

  82. High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants

    Article • Microbiology Resource Announcements, July 2018, ASM Journals

    Jonathan L Klassen Klassen, Dr Nikos C Kyrpides

  83. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Article • Nature Biotechnology, July 2018, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  84. Erratum: California voters and CIRM—will lightning strike twice?

    Article • Nature Biotechnology, July 2018, Springer Science + Business Media

    Dr Nikos C Kyrpides, Dr Susannah Green Tringe

  85. Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs

    Article • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, May 2018, Society for General Microbiology

    Dr Nikos C Kyrpides

  86. Genomes of ubiquitous marine and hypersalineHydrogenovibrio,ThiomicrorhabdusandThiomicrospiraspp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments

    Article • Environmental Microbiology, April 2018, Wiley

    Dr Nikos C Kyrpides

  87. Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

    Article • Nature Biotechnology, April 2018, Springer Science + Business Media

    Dr Nikos C Kyrpides

  88. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

    Article • Nature Biotechnology, March 2018, Springer Science + Business Media

    Dr Christopher J Creevey, Dr Nikos C Kyrpides

  89. Corrigendum: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

    Article • Frontiers in Microbiology, March 2018, Frontiers

    Dr Nikos C Kyrpides

  90. Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria , emended description of Geminicoccus roseus , and proposal of Geminicoccaceae fam. nov.

    Article • Systematic and Applied Microbiology, March 2018, Elsevier

    Professor Paula V Morais, Dr Nikos C Kyrpides

  91. Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes

    Article • Frontiers in Microbiology, February 2018, Frontiers

    Dr Nikos C Kyrpides

  92. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Article • Nature Biotechnology, February 2018, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  93. Draft Genome Sequence of Monaibacterium marinum C7 T , Isolated from Seawater from the Menai Straits, Wales, United Kingdom

    Article • Genome Announcements, February 2018, ASM Journals

    Dr Nikos C Kyrpides

  94. Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil

    Article • Genome Announcements, February 2018, ASM Journals

    Dr Nikos C Kyrpides, Kristen DeAngelis

  95. Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil

    Article • Genome Announcements, January 2018, ASM Journals

    Dr Nikos C Kyrpides, Kristen DeAngelis

  96. Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile

    Article • Genome Announcements, January 2018, ASM Journals

    Dr Nikos C Kyrpides

  97. Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential

    Article • Scientific Reports, January 2018, Springer Science + Business Media

    Dr Nikos C Kyrpides

  98. How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?

    Article • Applied and Environmental Microbiology, January 2018, ASM Journals

    Luis M Rodriguez-R, Konstantinos Konstantinidis, Dr Nikos C Kyrpides

  99. HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks

    Article • Nucleic Acids Research, January 2018, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  100. Draft genome sequence of Chryseobacterium limigenitum SUR2 T (LMG 28734 T ) isolated from dehydrated sludge

    Article • Brazilian Journal of Microbiology, January 2018, Springer Science + Business Media

    Dr Nikos C Kyrpides

  101. Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae

    Article • Frontiers in Microbiology, December 2017, Frontiers

    Dr Dao-Feng Zhang, Dr Nikos C Kyrpides

  102. Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence

    Article • PLoS ONE, December 2017, PLOS

    Dr Nikos C Kyrpides

  103. Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov.

    Article • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, December 2017, Society for General Microbiology

    Dr Nikos C Kyrpides

  104. Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium

    Article • Standards in Genomic Sciences, December 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  105. Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring

    Article • Standards in Genomic Sciences, December 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  106. Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes

    Article • Standards in Genomic Sciences, December 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  107. Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T

    Article • Standards in Genomic Sciences, December 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  108. Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico

    Article • Scientific Reports, November 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  109. Correction to: Towards a balanced view of the bacterial tree of life

    Article • Microbiome, November 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  110. A thermostable Cas9 with increased lifetime in human plasma

    Article • Nature Communications, November 2017, Nature

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  111. Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

    Article • Standards in Genomic Sciences, October 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  112. Towards a balanced view of the bacterial tree of life

    Article • Microbiome, October 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  113. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

    Article • Nature Methods, October 2017, Springer Science + Business Media

    Dr Robert A Edwards, Dr Nikos C Kyrpides

  114. Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring

    Article • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, October 2017, Society for General Microbiology

    Dr Nikos C Kyrpides

  115. High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain

    Article • Standards in Genomic Sciences, September 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  116. Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile

    Article • Standards in Genomic Sciences, September 2017, Springer Science + Business Media

    Gerard Muyzer, Dr Nikos C Kyrpides

  117. Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T

    Article • Standards in Genomic Sciences, September 2017, Springer Science + Business Media

    Professor Paula V Morais, Dr Nikos C Kyrpides

  118. Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast

    Article • Genome Announcements, August 2017, ASM Journals

    Dr Nikos C Kyrpides

  119. Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis

    Article • The ISME Journal, August 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  120. Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample

    Article • Genome Announcements, August 2017, ASM Journals

    Dr Nikos C Kyrpides

  121. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Article • Nature Biotechnology, August 2017, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Susannah Green Tringe, Dr Nikos C Kyrpides, William Nelson

  122. High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460

    Article • Standards in Genomic Sciences, July 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  123. Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data

    Article • Nature Protocols, July 2017, Nature

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  124. NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks

    Article • BMC Research Notes, July 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  125. On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires

    Article • mBio, July 2017, ASM Journals

    Dr Nikos C Kyrpides

  126. Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

    Article • Frontiers in Microbiology, June 2017, Frontiers

    Dr Nikos C Kyrpides

  127. Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil

    Article • Genome Announcements, June 2017, ASM Journals

    Dr Svetlana N Dedysh, Dr Nikos C Kyrpides

  128. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

    Article • Nature Biotechnology, June 2017, Springer Science + Business Media

    PhD David Paez-Espino, Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  129. Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater

    Article • Antonie van Leeuwenhoek, May 2017, Springer Science + Business Media

    Professor Peter A Vandamme, Dr Nikos C Kyrpides

  130. Succession in the petroleum reservoir microbiome through an oil field production lifecycle

    Article • The ISME Journal, May 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  131. A thermostable Cas9 with increased lifetime in human plasma

    Article • May 2017, Cold Spring Harbor Laboratory Press

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  132. RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea

    Article • mBio, May 2017, ASM Journals

    Sergey Melnikov, Dr Nikos C Kyrpides

  133. High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk

    Article • Standards in Genomic Sciences, May 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  134. Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia

    Article • Genome Announcements, April 2017, ASM Journals

    Dr Nikos C Kyrpides

  135. Giant viruses with an expanded complement of translation system components

    Article • Science, April 2017, American Association for the Advancement of Science

    Prof. Dr. Dr. h.c. Michael Wagner, Dr Nikos C Kyrpides

  136. Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP)

    Article • Journal of Biomolecular Techniques JBT, April 2017, Association of Biomolecular Resource Facilities

    Dr Nikos C Kyrpides

  137. Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters

    Article • Genome Announcements, March 2017, ASM Journals

    Dr Nikos C Kyrpides

  138. High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr

    Article • Standards in Genomic Sciences, March 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  139. Absence of genome reduction in diverse, facultative endohyphal bacteria

    Article • Microbial Genomics, February 2017, Society for General Microbiology

    Dr Nikos C Kyrpides

  140. Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota

    Article • Frontiers in Microbiology, February 2017, Frontiers

    Dr Nikos C Kyrpides

  141. High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698)

    Article • Standards in Genomic Sciences, February 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  142. Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

    Article • Standards in Genomic Sciences, February 2017, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  143. Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov.

    Article • Standards in Genomic Sciences, January 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  144. Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria

    Article • Standards in Genomic Sciences, January 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  145. Protein structure determination using metagenome sequence data

    Article • Science, January 2017, American Association for the Advancement of Science

    Dr Nikos C Kyrpides

  146. High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia

    Article • Standards in Genomic Sciences, January 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  147. Evolution of a multi-step phosphorelay signal transduction system inEnsifer: recruitment of the sigma factor RpoN and a novel enhancer-binding protein triggers acid-activated gene expression

    Article • Molecular Microbiology, January 2017, Wiley

    Dr Nikos C Kyrpides

  148. Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software

    Article • January 2017, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  149. High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea

    Article • Standards in Genomic Sciences, January 2017, Springer Science + Business Media

    Dr Nikos C Kyrpides

  150. Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis

    Article • Advances in Bioinformatics, January 2017, Hindawi Publishing Corporation

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  151. Genome-Based Taxonomic Classification of Bacteroidetes

    Article • Frontiers in Microbiology, December 2016, Frontiers

    Dr Nikos C Kyrpides

  152. IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

    Article • Nucleic Acids Research, November 2016, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  153. Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm

    Article • Genome Announcements, November 2016, ASM Journals

    Professor Terry C Hazen, Dr Nikos C Kyrpides

  154. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds

    Article • Genome Announcements, November 2016, ASM Journals

    Dr Nikos C Kyrpides

  155. Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

    Article • Nucleic Acids Research, October 2016, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  156. High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1 T Isolated from Great Boiling Spring, Nevada

    Article • Genome Announcements, October 2016, ASM Journals

    Dr Nikos C Kyrpides

  157. IMG/M: integrated genome and metagenome comparative data analysis system

    Article • Nucleic Acids Research, October 2016, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  158. MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources

    Article • Standards in Genomic Sciences, October 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  159. Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

    Article • Standards in Genomic Sciences, October 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  160. Transfer RNAs with novel cloverleaf structures

    Article • Nucleic Acids Research, October 2016, Oxford University Press (OUP)

    Oscar Vargas, Dr Nikos C Kyrpides

  161. Description of Trichococcus ilyis sp. nov. by combined physiological and in silico genome hybridization analyses

    Article • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, October 2016, Society for General Microbiology

    Dr Nikos C Kyrpides

  162. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

    Article • Nucleic Acids Research, October 2016, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  163. Application of Long Sequence Reads To Improve Genomes forClostridium thermocellumAD2,Clostridium thermocellumLQRI, andPelosinus fermentansR7

    Article • Genome Announcements, September 2016, ASM Journals

    Dr Nikos C Kyrpides

  164. Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

    Article • Standards in Genomic Sciences, September 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  165. Heavy metal resistant bacteria in soil

    Article • Genome Announcements, September 2016, ASM Journals

    Dr Jose A Ibarra, Dr Paulina Estrada de los Santos, Dr Nikos C Kyrpides

  166. Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34

    Article • Standards in Genomic Sciences, September 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  167. Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum

    Article • Genome Announcements, September 2016, ASM Journals

    Dr Nikos C Kyrpides

  168. An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1T

    Article • Standards in Genomic Sciences, September 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  169. Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes

    Article • Standards in Genomic Sciences, September 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  170. High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment

    Article • Standards in Genomic Sciences, September 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  171. High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains

    Article • Standards in Genomic Sciences, September 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  172. Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments

    Article • The ISME Journal, August 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  173. Uncovering Earth’s virome

    Article • Nature, August 2016, Nature

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  174. Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca

    Article • Genome Announcements, August 2016, ASM Journals

    Dr Nikos C Kyrpides

  175. Permanent Draft Genome Sequence ofNocardiasp. BMG111209, an Actinobacterium Isolated from Nodules ofCasuarina glauca

    Article • Genome Announcements, August 2016, ASM Journals

    Dr Nikos C Kyrpides

  176. Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

    Article • Genome Announcements, August 2016, ASM Journals

    Dr Nikos C Kyrpides

  177. Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil

    Article • Standards in Genomic Sciences, July 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  178. High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India

    Article • Standards in Genomic Sciences, June 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  179. High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T

    Article • Standards in Genomic Sciences, June 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  180. Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

    Article • Standards in Genomic Sciences, June 2016, Springer Science + Business Media

    A/Prof Scott A Beatson, Ulrike Kappler, Dr Nikos C Kyrpides

  181. Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina...

    Article • Standards in Genomic Sciences, June 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  182. Microbiome Data Science: Understanding Our Microbial Planet

    Article • Trends in Microbiology, June 2016, Elsevier

    Dr Nikos C Kyrpides

  183. Draft Genome Sequence ofFrankiaStrain G2, a Nitrogen-Fixing Actinobacterium Isolated fromCasuarina equisetifoliaand Able To Nodulate Actinorhizal Plants of the OrderRhamnales

    Article • Genome Announcements, May 2016, ASM Journals

    Dr Nikos C Kyrpides

  184. High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China

    Article • Genome Announcements, April 2016, ASM Journals

    Dr Nikos C Kyrpides

  185. Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

    Article • BMC Genomics, April 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  186. Absence of Genome Reduction In Diverse, Facultative Endohyphal Bacteria

    Article • March 2016, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  187. Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

    Article • Standards in Genomic Sciences, March 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  188. Facile Recoding of Selenocysteine in Nature

    Article • Angewandte Chemie International Edition, March 2016, Wiley

    Dr Nikos C Kyrpides

  189. Leichte Neucodierung von Selenocystein in der Natur

    Article • Angewandte Chemie, March 2016, Wiley

    Dr Nikos C Kyrpides

  190. Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment

    Article • Standards in Genomic Sciences, March 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  191. High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409T with an incomplete denitrification pathway

    Article • Standards in Genomic Sciences, February 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  192. The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

    Article • Standards in Genomic Sciences, February 2016, Springer Science + Business Media

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  193. Metagenomics uncovers gaps in amplicon-based detection of microbial diversity

    Article • Nature Microbiology, February 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  194. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

    Article • Nature Communications, January 2016, Nature

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  195. Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems: TABLE 1 

    Article • Genome Announcements, January 2016, ASM Journals

    Dr Nikos C Kyrpides, Dr. Huub JM Op den Camp

  196. High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods

    Article • Standards in Genomic Sciences, January 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  197. Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland

    Article • Standards in Genomic Sciences, January 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  198. Complete genome sequence of Methanospirillum hungatei type strain JF1

    Article • Standards in Genomic Sciences, January 2016, Springer Science + Business Media

    Dr Nikos C Kyrpides

  199. Crowdsourcing and curation: perspectives from biology and natural language processing

    Article • Database, January 2016, Oxford University Press (OUP)

    Stephanie Boue, Dr Nikos C Kyrpides

  200. Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology

    Article • Environmental Microbiology, December 2015, Wiley

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  201. High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1 T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism

    Article • Genome Announcements, December 2015, ASM Journals

    Dr Nikos C Kyrpides

  202. High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil

    Article • Standards in Genomic Sciences, December 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  203. Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos

    Article • Standards in Genomic Sciences, November 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  204. Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria

    Article • Scientific Reports, November 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  205. Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake

    Article • Standards in Genomic Sciences, November 2015, Springer Science + Business Media

    Gerard Muyzer, Dr Nikos C Kyrpides

  206. Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.

    Article • Standards in Genomic Sciences, November 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  207. High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture

    Article • Standards in Genomic Sciences, November 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  208. Complete Genome Sequence of Methanosphaerula palustris E1-9C T , a Hydrogenotrophic Methanogen Isolated from a Minerotrophic Fen Peatland

    Article • Genome Announcements, November 2015, ASM Journals

    Dr Nikos C Kyrpides

  209. Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System

    Article • Trends in Microbiology, November 2015, Elsevier

    Dr Nikos C Kyrpides

  210. The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

    Article • Standards in Genomic Sciences, October 2015, Springer Science + Business Media

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  211. Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification

    Article • Standards in Genomic Sciences, October 2015, Springer Science + Business Media

    Gerard Muyzer, Dr Nikos C Kyrpides

  212. Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T

    Article • Standards in Genomic Sciences, October 2015, Springer Science + Business Media

    Gerard Muyzer, Dr Nikos C Kyrpides

  213. High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia

    Article • Standards in Genomic Sciences, October 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  214. High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6

    Article • Standards in Genomic Sciences, October 2015, Springer Science + Business Media

    Sofie Elisabeth De Meyer, Dr Nikos C Kyrpides

  215. High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176

    Article • Standards in Genomic Sciences, October 2015, Springer Science + Business Media

    Sofie Elisabeth De Meyer, Dr Nikos C Kyrpides

  216. High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556T

    Article • Standards in Genomic Sciences, September 2015, Springer Science + Business Media

    Sofie Elisabeth De Meyer, Dr Nikos C Kyrpides

  217. Minimum Information about a Biosynthetic Gene cluster

    Article • Nature Methods, August 2015, Nature

    Dr Jean-Luc Pernodet, Dr Leonilde M Moreira, Kapil Tahlan, Professor Rainer Borriss, Dr Nikos C Kyrpides

  218. Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4

    Article • Standards in Genomic Sciences, August 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  219. High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym

    Article • Standards in Genomic Sciences, August 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  220. High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea

    Article • Standards in Genomic Sciences, August 2015, Springer Science + Business Media

    Dr. Georgios Zervakis, Dr Nikos C Kyrpides

  221. Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group

    Article • Standards in Genomic Sciences, August 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  222. Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina

    Article • Genome Announcements, August 2015, ASM Journals

    Dr Nikos C Kyrpides

  223. High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T)

    Article • Standards in Genomic Sciences, August 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  224. High quality draft genome sequence of Bacteroides barnesiae type strain BL2T (DSM 18169T) from chicken caecum

    Article • Standards in Genomic Sciences, August 2015, Springer Science + Business Media

    Dr Mitsuo Sakamoto, Dr Nikos C Kyrpides

  225. Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments

    Article • Microbiology, August 2015, Society for General Microbiology

    Dr Nikos C Kyrpides

  226. High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes

    Article • Standards in Genomic Sciences, July 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  227. Toward a standard in structural genome annotation for prokaryotes

    Article • Standards in Genomic Sciences, July 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  228. High-quality permanent draft genome sequence of Rhizobium sullae strain WSM1592; a Hedysarum coronarium microsymbiont from Sassari, Italy

    Article • Standards in Genomic Sciences, July 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  229. Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a

    Article • Genome Announcements, July 2015, ASM Journals

    Dr Nikos C Kyrpides

  230. Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium

    Article • Genome Announcements, July 2015, ASM Journals

    Dr Nikos C Kyrpides

  231. High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland

    Article • Standards in Genomic Sciences, July 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  232. IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

    Article • mBio, July 2015, ASM Journals

    Dr Nikos C Kyrpides

  233. The Genome Sequence of the Novel Rhizobial SpeciesMicrovirga lotononidisStrain WSM3557T

    Article • July 2015, Wiley

    Dr Nikos C Kyrpides

  234. Microbial species delineation using whole genome sequences

    Article • Nucleic Acids Research, July 2015, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  235. High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris

    Article • Standards in Genomic Sciences, July 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  236. The Joint Genome Institute Offers Resources Beyond a Core Facility

    Article • Microbe Magazine, July 2015, ASM Journals

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  237. Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.

    Article • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, July 2015, Society for General Microbiology

    Dr Nikos C Kyrpides

  238. Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation

    Article • The ISME Journal, June 2015, Nature

    PhD David Paez-Espino, Dr Nikos C Kyrpides

  239. Genome Sequence of the Alkaline-Tolerant Cellulomonas sp. Strain FA1

    Article • Genome Announcements, June 2015, ASM Journals

    Dr Nikos C Kyrpides

  240. Genome Sequence ofPorticoccus hydrocarbonoclasticusStrain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

    Article • Genome Announcements, June 2015, ASM Journals

    Dr Nikos C Kyrpides

  241. High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica

    Article • Standards in Genomic Sciences, June 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  242. Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki

    Article • Genome Announcements, June 2015, ASM Journals

    Dr. Huub JM Op den Camp, Dr Nikos C Kyrpides

  243. ProDeGe: a computational protocol for fully automated decontamination of genomes

    Article • The ISME Journal, June 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  244. High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413

    Article • Standards in Genomic Sciences, June 2015, Springer Science + Business Media

    Professor Elena Rossana Fabiano, Sofie Elisabeth De Meyer, Dr Nikos C Kyrpides

  245. Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels

    Article • PLoS ONE, June 2015, PLOS

    Dr Nikos C Kyrpides

  246. High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass

    Article • Standards in Genomic Sciences, May 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  247. Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains

    Article • Standards in Genomic Sciences, May 2015, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Professor Peter A Vandamme, Dr Nikos C Kyrpides

  248. High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama

    Article • Standards in Genomic Sciences, May 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  249. High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York

    Article • Standards in Genomic Sciences, May 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  250. Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “ Thermoanaerobacter cellulolyticus ...

    Article • Genome Announcements, May 2015, ASM Journals

    Dr Nikos C Kyrpides

  251. High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass

    Article • Standards in Genomic Sciences, May 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  252. Large-scale contamination of microbial isolate genomes by Illumina PhiX control

    Article • Standards in Genomic Sciences, March 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  253. Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

    Article • Genome Announcements, March 2015, ASM Journals

    Dr Nikos C Kyrpides

  254. Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle

    Article • Proceedings of the National Academy of Sciences, March 2015, Proceedings of the National Academy of Sciences

    Dr Nikos C Kyrpides, William Nelson

  255. High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater

    Article • Genome Announcements, March 2015, ASM Journals

    Professor Terry C Hazen, Dr Nikos C Kyrpides

  256. Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase

    Article • Genome Announcements, March 2015, ASM Journals

    Dr Svetlana N Dedysh, Dr Nikos C Kyrpides

  257. High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov.

    Article • Standards in Genomic Sciences, February 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  258. A Genomic Encyclopedia of the Root Nodule Bacteria: assessing genetic diversity through a systematic biogeographic survey

    Article • Standards in Genomic Sciences, February 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  259. Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

    Article • Genome Announcements, January 2015, ASM Journals

    Dr Nikos C Kyrpides

  260. High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

    Article • Standards in Genomic Sciences, January 2015, Springer Science + Business Media

    Professor Elena Rossana Fabiano, Dr Nikos C Kyrpides

  261. Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China

    Article • Standards in Genomic Sciences, January 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  262. High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India

    Article • Standards in Genomic Sciences, January 2015, Springer Science + Business Media

    Dr Nikos C Kyrpides

  263. Genome sequence of the Lotus corniculatus microsymbiont Mesorhizobium loti strain R88B

    Article • Standards in Genomic Sciences, December 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  264. The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

    Article • Nucleic Acids Research, October 2014, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  265. Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation

    Article • PLoS ONE, October 2014, PLOS

    Dr Nikos C Kyrpides

  266. Draft Genome Sequences of 10 Strains of the Genus Exiguobacterium

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Tatiana A Vishnivetskaya, Dr Nikos C Kyrpides

  267. Complete Genome Sequence of Methanoregula formicica SMSPT, a Mesophilic Hydrogenotrophic Methanogen Isolated from a Methanogenic Upflow Anaerobic Sludge Blanket Reactor

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Nikos C Kyrpides

  268. Complete Genome Sequence of Methanolinea tarda NOBI-1T, a Hydrogenotrophic Methanogen Isolated from Methanogenic Digester Sludge

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Nikos C Kyrpides

  269. Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

    Article • PLoS Biology, August 2014, PLOS

    Professor Julian Parkhill, Dr Timothy J Donohue, Prof. Jonathan A. Eisen, Prof George M Garrity, Prof. Dr. Dr. h.c. Michael Wagner, PhD, Microbiology Edward R.B. Moore, Antoine Danchin, Dr Nikos C Kyrpides

  270. Erratum: Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

    Article • The ISME Journal, July 2014, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  271. Stop codon reassignments in the wild

    Article • Science, May 2014, American Association for the Advancement of Science

    Dr Nikos C Kyrpides

  272. Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring

    Article • Standards in Genomic Sciences, May 2014, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  273. High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China

    Article • Standards in Genomic Sciences, April 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  274. Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  275. Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  276. Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr Inês A. C. Pereira, Dr Nikos C Kyrpides

  277. High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6T), a diphenol degrader with genes involved in the catechol pathway

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr. Georgios Zervakis, Dr Nikos C Kyrpides

  278. The complete genome sequence of Clostridium indolis DSM 755T

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  279. Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr. Emma K Wear, John R Casey, Dr Nikos C Kyrpides

  280. Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  281. Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094T), a moderately halophilic member of the Roseobacter clade

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  282. Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr Inês A. C. Pereira, Dr Nikos C Kyrpides

  283. Genome sequence of Microvirga lupini strain LUT6T, a novel Lupinus alphaproteobacterial microsymbiont from Texas

    Article • Standards in Genomic Sciences, March 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  284. Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

    Article • The ISME Journal, February 2014, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  285. Genomic Standards Consortium Projects

    Article • Standards in Genomic Sciences, February 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  286. Genomic Standards Consortium Projects

    Article • Standards in Genomic Sciences, February 2014, Springer Science + Business Media

    Prof George M Garrity, Dr Nikos C Kyrpides

  287. Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  288. Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  289. Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer

    Article • Genome Announcements, January 2014, ASM Journals

    Dr Nikos C Kyrpides

  290. Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Professor Terry C Hazen, Dr Nikos C Kyrpides

  291. Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended ...

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  292. Complete genome sequence of Anabaena variabilis ATCC 29413

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  293. Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  294. Genome sequence of Ensifer medicae Di28; an effective N2-fixing microsymbiont of Medicago murex and M. polymorpha

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  295. Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  296. Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  297. Genome sequence of the dark pink pigmented Listia bainesii microsymbiont Methylobacterium sp. WSM2598

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Nikos C Kyrpides

  298. Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271T)

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  299. Genome sequence of Burkholderia mimosarum strain LMG 23256T, a Mimosa pigra microsymbiont from Anso, Taiwan

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  300. Genome sequence of Ensifer arboris strain LMG 14919T; a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  301. Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  302. Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  303. Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557T

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  304. Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  305. Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Jonathan Eisen, Prof. Jonathan A. Eisen, Prof George M Garrity, Dr Nikos C Kyrpides

  306. Genome sequence of Ensifer medicae strain WSM1369; an effective microsymbiont of the annual legume Medicago sphaerocarpos

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  307. Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  308. Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  309. Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  310. Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  311. Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075T

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  312. Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  313. Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  314. Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  315. Genome sequence of the Lebeckia ambigua-nodulating “Burkholderia sprentiae” strain WSM5005T

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  316. Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  317. Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  318. Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  319. Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  320. Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943.

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  321. Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  322. Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417

    Article • Standards in Genomic Sciences, December 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  323. Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia

    Article • Standards in Genomic Sciences, November 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  324. Draft Genome Sequence of Pseudomonas azotifigens Strain DSM 17556T (6H33bT), a Nitrogen Fixer Strain Isolated from a Compost Pile

    Article • Genome Announcements, October 2013, ASM Journals

    Jorge Lalucat, Dr Nikos C Kyrpides

  325. IMG 4 version of the integrated microbial genomes comparative analysis system

    Article • Nucleic Acids Research, October 2013, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  326. IMG/M 4 version of the integrated metagenome comparative analysis system

    Article • Nucleic Acids Research, October 2013, Oxford University Press (OUP)

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  327. Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336T), a representative of the Roseobacter clade

    Article • Standards in Genomic Sciences, October 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  328. Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis

    Article • Standards in Genomic Sciences, October 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  329. Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701T) and emended description of the genus Thermanaerovibrio

    Article • Standards in Genomic Sciences, October 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  330. Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl.

    Article • Standards in Genomic Sciences, October 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  331. Genome sequence of the Litoreibacter arenae type strain (DSM 19593T), a member of the Roseobacter clade isolated from sea sand

    Article • Standards in Genomic Sciences, October 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  332. High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

    Article • Proceedings of the National Academy of Sciences, September 2013, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  333. Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics

    Article • Marine Drugs, September 2013, MDPI AG

    Dr Nikos C Kyrpides

  334. Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134T)

    Article • Standards in Genomic Sciences, September 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  335. Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1

    Article • Genome Announcements, August 2013, ASM Journals

    Dr Jennifer Pett-Ridge, Dr Nikos C Kyrpides

  336. Genome sequence of Phaeobacter caeruleus type strain (DSM 24564T), a surface-associated member of the marine Roseobacter clade

    Article • Standards in Genomic Sciences, July 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  337. Complete genome sequence of Dehalobacter restrictus PER-K23T

    Article • Standards in Genomic Sciences, July 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  338. Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements

    Article • Standards in Genomic Sciences, July 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  339. Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566T

    Article • Standards in Genomic Sciences, July 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  340. Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

    Article • Standards in Genomic Sciences, July 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  341. Insights into the phylogeny and coding potential of microbial dark matter

    Article • Nature, July 2013, Nature

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  342. Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils

    Article • Genome Announcements, July 2013, ASM Journals

    Dr Nikos C Kyrpides

  343. Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis

    Article • Genome Announcements, July 2013, ASM Journals

    Dr Nikos C Kyrpides

  344. Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete

    Article • Genome Announcements, July 2013, ASM Journals

    Dr Nikos C Kyrpides

  345. Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T)

    Article • Standards in Genomic Sciences, May 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  346. Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT), and emendation of the species Turneriella parva

    Article • Standards in Genomic Sciences, May 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  347. Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift

    Article • Standards in Genomic Sciences, May 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  348. Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum strain SIT.

    Article • Standards in Genomic Sciences, April 2013, Springer Science + Business Media

    Dr Inês A. C. Pereira, Gerard Muyzer, Dr Nikos C Kyrpides

  349. High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T)

    Article • Standards in Genomic Sciences, April 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  350. Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Tre...

    Article • Standards in Genomic Sciences, April 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  351. Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT)

    Article • Standards in Genomic Sciences, April 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  352. Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T)

    Article • Standards in Genomic Sciences, April 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  353. Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug)

    Article • Standards in Genomic Sciences, April 2013, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  354. Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites

    Article • PLoS ONE, April 2013, PLOS

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  355. Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T

    Article • Genome Announcements, April 2013, ASM Journals

    Dr Nikos C Kyrpides

  356. Draft Genome Sequence of Frankia sp. Strain QA3, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Alnus nitida

    Article • Genome Announcements, March 2013, ASM Journals

    Dr Nikos C Kyrpides

  357. Draft Genome Sequence of Frankia sp. Strain CN3, an Atypical, Noninfective (Nod-) Ineffective (Fix-) Isolate from Coriaria nepalensis

    Article • Genome Announcements, March 2013, ASM Journals

    Dr Nikos C Kyrpides

  358. Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens

    Article • Genome Announcements, March 2013, ASM Journals

    Cameron R Currie, Dr Nikos C Kyrpides

  359. Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

    Article • Standards in Genomic Sciences, February 2013, Springer Science + Business Media

    Dr Nikos C Kyrpides

  360. Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens

    Article • Genome Announcements, February 2013, ASM Journals

    Cameron R Currie, Dr Nikos C Kyrpides

  361. Improving Microbial Genome Annotations in an Integrated Database Context

    Article • PLoS ONE, February 2013, PLOS

    Dr Nikos C Kyrpides

  362. Correction: Comparative Genomic Analysis of the Endosymbionts of Herbivorous Insects Reveals Eco-Environmental Adaptations: Biotechnology Applications

    Article • PLoS Genetics, February 2013, PLOS

    Dr Nikos C Kyrpides

  363. Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin

    Article • Genome Announcements, January 2013, ASM Journals

    Dr Nikos C Kyrpides

  364. Comparative Genomic Analysis of the Endosymbionts of Herbivorous Insects Reveals Eco-Environmental Adaptations: Biotechnology Applications

    Article • PLoS Genetics, January 2013, PLOS

    Dr Nikos C Kyrpides

  365. The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

    Article • PLoS ONE, December 2012, PLOS

    Dr Nikos C Kyrpides

  366. Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)

    Article • Standards in Genomic Sciences, December 2012, Springer Science + Business Media

    Dr Inês A. C. Pereira, Gerard Muyzer, Dr Nikos C Kyrpides

  367. Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T)

    Article • Standards in Genomic Sciences, December 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  368. Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

    Article • Journal of Bacteriology, October 2012, ASM Journals

    Prof. Dr. Dr. h.c. Michael Wagner, Dr Nikos C Kyrpides

  369. Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801T)

    Article • Standards in Genomic Sciences, October 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  370. Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T)

    Article • Standards in Genomic Sciences, October 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  371. Complete Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp. mobilis Centrotype ATCC 29191

    Article • Journal of Bacteriology, October 2012, ASM Journals

    Dr Nikos C Kyrpides

  372. Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3

    Article • Journal of Bacteriology, October 2012, ASM Journals

    Professor Mohamed Jebbar, Dr Nikos C Kyrpides

  373. Complete genome sequence of Marinomonas posidonica type strain (IVIA-Po-181T)

    Article • Standards in Genomic Sciences, September 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  374. Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)

    Article • Standards in Genomic Sciences, September 2012, Springer Science + Business Media

    A/Prof Scott A Beatson, Ulrike Kappler, Dr Nikos C Kyrpides

  375. Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)

    Article • Standards in Genomic Sciences, September 2012, Springer Science + Business Media

    A/Prof Scott A Beatson, Dr Nikos C Kyrpides

  376. Complete genome sequence of the plant-associated Serratia plymuthica strain AS13

    Article • Standards in Genomic Sciences, September 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  377. Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia

    Article • Journal of Bacteriology, September 2012, ASM Journals

    Dr Nikos C Kyrpides

  378. Complete Genome Sequences of Six Strains of the Genus Methylobacterium

    Article • Journal of Bacteriology, August 2012, ASM Journals

    Dr Nikos C Kyrpides

  379. Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park

    Article • Standards in Genomic Sciences, July 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  380. Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT)

    Article • Standards in Genomic Sciences, July 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  381. Complete genome sequence of Thauera aminoaromatica strain MZ1T

    Article • Standards in Genomic Sciences, July 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  382. The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness

    Article • Standards in Genomic Sciences, July 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  383. IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

    Article • PLoS ONE, July 2012, PLOS

    Dr Nikos C Kyrpides

  384. Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria

    Article • PLoS ONE, June 2012, PLOS

    Dr Nikos C Kyrpides

  385. Structure, function and diversity of the healthy human microbiome

    Article • Nature, June 2012, Springer Science + Business Media

    Professor Patrick D Schloss, Dr Tatiana A Vishnivetskaya, Dr. Jacques Izard, Dr Nikos C Kyrpides, Professor Thomas M Schmidt

  386. A framework for human microbiome research

    Article • Nature, June 2012, Springer Science + Business Media

    Professor Patrick D Schloss, Dr Tatiana A Vishnivetskaya, Dr. Jacques Izard, Dr Nikos C Kyrpides, Professor Thomas M Schmidt

  387. Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9T) and comparison to “Dehalococcoides” strains

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  388. Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  389. Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  390. Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  391. Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  392. Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T)

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  393. Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  394. Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaeroch...

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  395. Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1T)

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  396. Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  397. Complete genome sequence of Serratia plymuthica strain AS12

    Article • Standards in Genomic Sciences, May 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  398. Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRPT)

    Article • Standards in Genomic Sciences, April 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  399. Correction: Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

    Article • PLoS ONE, March 2012, PLOS

    Dr Nikos C Kyrpides

  400. Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T)

    Article • Standards in Genomic Sciences, March 2012, Springer Science + Business Media

    Dr Qinglong L Wu, Dr Nikos C Kyrpides

  401. Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T)

    Article • Standards in Genomic Sciences, March 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  402. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1T) from a deep-sea hydrothermal vent chimney

    Article • Standards in Genomic Sciences, March 2012, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  403. Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T)

    Article • Standards in Genomic Sciences, March 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  404. Complete genome sequence of Halopiger xanaduensis type strain (SH-6T)

    Article • Standards in Genomic Sciences, March 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  405. Conceptualizing a Genomics Software Institute (GSI)

    Article • Standards in Genomic Sciences, March 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  406. Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1T).

    Article • Standards in Genomic Sciences, March 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  407. Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9

    Article • Standards in Genomic Sciences, March 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  408. Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

    Article • PLoS ONE, February 2012, PLOS

    Dr Nikos C Kyrpides

  409. A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  410. The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

    Article • BMC Bioinformatics, January 2012, Springer Science + Business Media

    Dr Nikos C Kyrpides

  411. Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)

    Article • Standards in Genomic Sciences, December 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  412. Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSAT) from a deep-sea hydrothermal vent

    Article • Standards in Genomic Sciences, December 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  413. Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)

    Article • Standards in Genomic Sciences, December 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  414. Complete genome sequence of Thioalkalivibrio sp. K90mix

    Article • Standards in Genomic Sciences, December 2011, Springer Science + Business Media

    Gerard Muyzer, Dr Nikos C Kyrpides

  415. Complete genome sequence of Hirschia baltica type strain (IFAM 1418T)

    Article • Standards in Genomic Sciences, December 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  416. Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)

    Article • Standards in Genomic Sciences, December 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  417. Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

    Article • Standards in Genomic Sciences, December 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  418. IMG: the integrated microbial genomes database and comparative analysis system

    Article • Nucleic Acids Research, December 2011, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  419. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

    Article • Nucleic Acids Research, December 2011, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  420. Complete Genome Sequence of the Aerobic Marine Methanotroph Methylomonas methanica MC09

    Article • Journal of Bacteriology, November 2011, ASM Journals

    Dr Nikos C Kyrpides

  421. ClaMS: A Classifier for Metagenomic Sequences

    Article • Standards in Genomic Sciences, November 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  422. The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011

    Article • Standards in Genomic Sciences, November 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  423. Heterologous Expression and Characterization of Two 1-Hydroxy-2-Naphthoic Acid Dioxygenases from Arthrobacter phenanthrenivorans

    Article • Applied and Environmental Microbiology, November 2011, ASM Journals

    Dr Nikos C Kyrpides

  424. IMG/M: the integrated metagenome data management and comparative analysis system

    Article • Nucleic Acids Research, November 2011, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  425. Individual genome assembly from complex community short-read metagenomic datasets

    Article • The ISME Journal, October 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  426. The Complete Genome Sequence of Thermoproteus tenax: A Physiologically Versatile Member of the Crenarchaeota

    Article • PLoS ONE, October 2011, PLOS

    Professor Sonja-Verena Albers, Dr Nikos C Kyrpides

  427. Complete genome sequence of Ferroglobus placidus AEDII12DO

    Article • Standards in Genomic Sciences, October 2011, Springer Science + Business Media

    Dr Derek R. Lovley, Dr Nikos C Kyrpides

  428. Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)

    Article • Standards in Genomic Sciences, October 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  429. Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1

    Article • Standards in Genomic Sciences, October 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  430. Complete genome sequence of “Enterobacter lignolyticus” SCF1

    Article • Standards in Genomic Sciences, September 2011, Springer Science + Business Media

    Professor Terry C Hazen, Professor Adam P Arkin, Dr Nikos C Kyrpides

  431. Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20T)

    Article • Standards in Genomic Sciences, September 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  432. Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10T)

    Article • Standards in Genomic Sciences, September 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  433. Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T)

    Article • Standards in Genomic Sciences, September 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  434. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262T)

    Article • Standards in Genomic Sciences, September 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  435. Complete genome sequence of Staphylothermus hellenicus P8T

    Article • Standards in Genomic Sciences, September 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  436. Complete genome sequence of Tolumonas auensis type strain (TA 4T)

    Article • Standards in Genomic Sciences, September 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  437. Engineering Escherichia coli for Biodiesel Production Utilizing a Bacterial Fatty Acid Methyltransferase

    Article • Applied and Environmental Microbiology, September 2011, ASM Journals

    Dr Nikos C Kyrpides

  438. Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7

    Article • Journal of Bacteriology, September 2011, ASM Journals

    Dr Nikos C Kyrpides

  439. Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp. pomaceae Lectotype Strain ATCC 29192

    Article • Journal of Bacteriology, July 2011, ASM Journals

    Dr Nikos C Kyrpides

  440. Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp. mobilis Lectotype Strain ATCC 10988

    Article • Journal of Bacteriology, July 2011, ASM Journals

    Dr Nikos C Kyrpides

  441. Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1AT)

    Article • Standards in Genomic Sciences, July 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  442. Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1T)

    Article • Standards in Genomic Sciences, July 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  443. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)

    Article • Standards in Genomic Sciences, July 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  444. Complete genome sequence of Tsukamurella paurometabola type strain (no. 33T)

    Article • Standards in Genomic Sciences, June 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  445. Complete genome sequence of Treponema succinifaciens type strain (6091T)

    Article • Standards in Genomic Sciences, June 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  446. Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH2T)

    Article • Standards in Genomic Sciences, June 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  447. Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSLT)

    Article • Standards in Genomic Sciences, June 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  448. Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2T)

    Article • Standards in Genomic Sciences, June 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  449. Complete genome sequence of Mahella australiensis type strain (50-1 BONT)

    Article • Standards in Genomic Sciences, June 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  450. Complete genome sequence of Haliscomenobacter hydrossis type strain (OT)

    Article • Standards in Genomic Sciences, June 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  451. Complete genome sequence of Rhodospirillum rubrum type strain (S1T)

    Article • Standards in Genomic Sciences, June 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  452. The Genomic Standards Consortium

    Article • PLoS Biology, June 2011, PLOS

    Prof George M Garrity, Dr Nikos C Kyrpides

  453. Complete Genome Sequence of the Anaerobic, Halophilic Alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF

    Article • Journal of Bacteriology, June 2011, ASM Journals

    Dr Nikos C Kyrpides

  454. Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes

    Article • PLoS ONE, May 2011, PLOS

    Dr Nikos C Kyrpides

  455. Genome Sequence of the Ethene- and Vinyl Chloride-Oxidizing Actinomycete Nocardioides sp. Strain JS614

    Article • Journal of Bacteriology, May 2011, ASM Journals

    Dr Nikos C Kyrpides

  456. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

    Article • Nature Biotechnology, May 2011, Springer Science + Business Media

    Professor Patrick D Schloss, Dr Nikos C Kyrpides

  457. Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  458. Complete genome sequence of Odoribacter splanchnicus type strain (1651/6T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  459. Complete genome sequence of Oceanithermus profundus type strain (506T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  460. Complete genome sequence of Marivirga tractuosa type strain (H-43T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  461. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  462. Complete genome sequence of Desulfurococcus mucosus type strain (O7/1T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  463. Complete genome sequence of Cellulophaga lytica type strain (LIM-21T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  464. Complete genome sequence of Bacteroides salanitronis type strain (BL78T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  465. Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  466. Meeting report of the RNA Ontology Consortium January 8-9, 2011

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  467. Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  468. Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Dr Nikos C Kyrpides

  469. Complete genome sequence of Leadbetterella byssophila type strain (4M15T)

    Article • Standards in Genomic Sciences, April 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  470. Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b

    Article • Journal of Bacteriology, April 2011, ASM Journals

    Dr Tatiana A Vishnivetskaya, Dr Nikos C Kyrpides

  471. Genome Sequence of the Verrucomicrobium Opitutus terrae PB90-1, an Abundant Inhabitant of Rice Paddy Soil Ecosystems

    Article • Journal of Bacteriology, March 2011, ASM Journals

    Dr Nikos C Kyrpides

  472. Genome Sequence of Victivallis vadensis ATCC BAA-548, an Anaerobic Bacterium from the Phylum Lentisphaerae, Isolated from the Human Gastrointestinal Tract

    Article • Journal of Bacteriology, March 2011, ASM Journals

    Dr Nikos C Kyrpides

  473. Alive and well at 100

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof George M Garrity, Dr Nikos C Kyrpides

  474. Complete genome sequence of Weeksella virosa type strain (9751T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  475. Complete genome sequence of Truepera radiovictrix type strain (RQ-24T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  476. Complete genome sequence of Cellulophaga algicola type strain (IC166T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  477. Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  478. Complete genome sequence of Deinococcus maricopensis type strain (LB-34T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  479. Complete genome sequence of Thermomonospora curvata type strain (B9T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  480. Complete genome sequence of Paludibacter propionicigenes type strain (WB4T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  481. Complete genome sequence of Isosphaera pallida type strain (IS1BT)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  482. Complete genome sequence of Desulfobulbus propionicus type strain (1pr3T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  483. Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1T)

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  484. The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri

    Article • PLoS Genetics, February 2011, PLOS

    Dr Nikos C Kyrpides

  485. Complete genome sequence of Thioalkalivibrio “sulfidophilus” HL-EbGr7

    Article • Standards in Genomic Sciences, February 2011, Springer Science + Business Media

    Gerard Muyzer, Dr Nikos C Kyrpides

  486. Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Cal...

    Article • Journal of Bacteriology, January 2011, ASM Journals

    Dr Nikos C Kyrpides

  487. Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid tolerance

    Article • Green Chemistry, January 2011, Royal Society of Chemistry

    Dr Nikos C Kyrpides

  488. SOP for pathway inference in Integrated Microbial Genomes (IMG)

    Article • Standards in Genomic Sciences, December 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  489. Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T)

    Article • Standards in Genomic Sciences, December 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  490. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

    Article • Nature Precedings, November 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  491. Complete genome sequence of Ferrimonas balearica type strain (PATT)

    Article • Standards in Genomic Sciences, October 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  492. Complete genome sequence of ‘Thermobaculum terrenum’ type strain (YNP1T)

    Article • Standards in Genomic Sciences, October 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  493. Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228T)

    Article • Standards in Genomic Sciences, October 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  494. Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production

    Article • Journal of Bacteriology, October 2010, ASM Journals

    Dr Nikos C Kyrpides

  495. Complete genome sequence of Vulcanisaeta distributa type strain (IC-017T)

    Article • Standards in Genomic Sciences, September 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  496. Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)

    Article • Standards in Genomic Sciences, September 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  497. Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T)

    Article • Standards in Genomic Sciences, September 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  498. Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207T)

    Article • Standards in Genomic Sciences, August 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  499. Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)

    Article • Standards in Genomic Sciences, August 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  500. Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1T)

    Article • Standards in Genomic Sciences, August 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  501. Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288T)

    Article • Standards in Genomic Sciences, August 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  502. Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8

    Article • Standards in Genomic Sciences, August 2010, Springer Science + Business Media

    Prof George M Garrity, Dr Nikos C Kyrpides

  503. Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

    Article • The ISME Journal, August 2010, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  504. Complete genome sequence of Planctomyces limnophilus type strain (Mü 290T)

    Article • Standards in Genomic Sciences, July 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  505. Complete genome sequence of Meiothermus silvanus type strain (VI-R2T)

    Article • Standards in Genomic Sciences, July 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  506. Complete genome sequence of Meiothermus ruber type strain (21T)

    Article • Standards in Genomic Sciences, July 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  507. Complete genome sequence of Cellulomonas flavigena type strain (134T)

    Article • Standards in Genomic Sciences, July 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  508. Complete genome sequence of Acidaminococcus fermentans type strain (VR4T)

    Article • Standards in Genomic Sciences, July 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  509. Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)

    Article • Standards in Genomic Sciences, July 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  510. Nikos Kyrpides on “The Future of Microbial Genomics”

    Article • July 2010, SciVee, Inc

    Dr Nikos C Kyrpides

  511. GSC 9: Open discussion of session: Unifying concepts in genomic annotation standards

    Article • July 2010, SciVee, Inc

    Dr Nikos C Kyrpides

  512. Gene Calling Standards

    Article • July 2010, SciVee, Inc

    Dr Nikos C Kyrpides

  513. The Microbial Earth Project

    Article • July 2010, SciVee, Inc

    Dr Nikos C Kyrpides

  514. Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  515. Complete genome sequence of Thermosphaera aggregans type strain (M11TLT)

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  516. Complete genome sequence of Thermobispora bispora type strain (R51T)

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  517. Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460T)

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  518. Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24T)

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  519. Complete genome sequence of Brachyspira murdochii type strain (56-150T)

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  520. Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  521. Complete genome sequence of Archaeoglobus profundus type strain (AV18T)

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  522. Complete genome sequence of Aminobacterium colombiense type strain (ALA-1T)

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  523. Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers.

    Article • Standards in Genomic Sciences, June 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  524. A Catalog of Reference Genomes from the Human Microbiome

    Article • Science, May 2010, American Association for the Advancement of Science

    Dr Nikos C Kyrpides

  525. GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

    Article • Nature Methods, May 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  526. Complete genome sequence of Thermocrinis albus type strain (HI 11/12T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  527. Complete genome sequence of Spirosoma linguale type strain (1T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  528. Complete genome sequence of Segniliparus rotundus type strain (CDC 1076T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  529. Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  530. Complete genome sequence of Nakamurella multipartita type strain (Y-104T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  531. Complete genome sequence of Kribbella flavida type strain (IFO 14399T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  532. Complete genome sequence of Geodermatophilus obscurus type strain (G-20T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  533. Complete genome sequence of Conexibacter woesei type strain (ID131577T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  534. Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  535. Complete genome sequence of Sulfurospirillum deleyianum type strain (5175T)

    Article • Standards in Genomic Sciences, March 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  536. The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader

    Article • PLoS ONE, March 2010, PLOS

    Dr Nikos C Kyrpides

  537. A call for standardized classification of metagenome projects

    Article • Environmental Microbiology, March 2010, Wiley

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  538. Complete genome sequence of Haloterrigena turkmenica type strain (4kT)

    Article • Standards in Genomic Sciences, February 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  539. Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034T)

    Article • Standards in Genomic Sciences, February 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  540. Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum.

    Article • Standards in Genomic Sciences, February 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  541. Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  542. Complete genome sequence of Veillonella parvula type strain (Te3T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  543. Complete genome sequence of Streptosporangium roseum type strain (NI 9100T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  544. Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  545. Complete genome sequence of Haliangium ochraceum type strain (SMP-2T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  546. Complete genome sequence of Gordonia bronchialis type strain (3410T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  547. Complete genome sequence of Desulfohalobium retbaense type strain (HR100T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  548. Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IAT)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  549. Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  550. The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010.

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Ruth Ley, Dr Nikos C Kyrpides

  551. Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  552. The Genome Sequence ofMethanohalophilus mahiiSLPTReveals Differences in the Energy Metabolism among Members of theMethanosarcinaceaeInhabiting Freshwater and Saline Environments

    Article • Archaea, January 2010, Hindawi Publishing Corporation

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  553. Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  554. Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  555. Complete genome sequence of Thermaerobacter marianensis type strain (7p75aT)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  556. Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  557. Complete genome sequence of Methanothermus fervidus type strain (V24ST)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  558. Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  559. Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  560. Complete genome sequence of Desulfarculus baarsii type strain (2st14T)

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  561. Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Prof George M Garrity, Dr Nikos C Kyrpides

  562. A data analysis and coordination center for the human microbiome project

    Article • Genome Biology, January 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  563. Meeting Report: Towards a Critical Assessment of Functional Annotation Experiment (CAFAE) for bacterial genome annotation

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  564. Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010

    Article • Standards in Genomic Sciences, January 2010, Springer Science + Business Media

    Dr Nikos C Kyrpides

  565. Complete genome sequence of Streptobacillus moniliformis type strain (9901T)

    Article • Standards in Genomic Sciences, December 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  566. Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T)

    Article • Standards in Genomic Sciences, December 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  567. Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)

    Article • Standards in Genomic Sciences, December 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  568. Complete genome sequence of Rhodothermus marinus type strain (R-10T)

    Article • Standards in Genomic Sciences, December 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  569. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

    Article • Nature, December 2009, Nature

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  570. Estimating DNA coverage and abundance in metagenomes using a gamma approximation

    Article • Bioinformatics, December 2009, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  571. Genome Sequence of the Fleming Strain of Micrococcus luteus, a Simple Free-Living Actinobacterium

    Article • Journal of Bacteriology, November 2009, ASM Journals

    Dr Nikos C Kyrpides, Charles Greenblatt

  572. Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

    Article • PLoS ONE, November 2009, PLOS

    Dr Nikos C Kyrpides

  573. Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883T)

    Article • Standards in Genomic Sciences, November 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  574. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T)

    Article • Standards in Genomic Sciences, November 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  575. Complete genome sequence of Kangiella koreensis type strain (SW-125T)

    Article • Standards in Genomic Sciences, November 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  576. Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134T)

    Article • Standards in Genomic Sciences, November 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  577. Complete genome sequence of Halorhabdus utahensis type strain (AX-2T)

    Article • Standards in Genomic Sciences, November 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  578. Complete genome sequence of Halomicrobium mukohataei type strain (arg-2T)

    Article • Standards in Genomic Sciences, November 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  579. Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575T)

    Article • Standards in Genomic Sciences, November 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  580. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

    Article • Nucleic Acids Research, November 2009, Oxford University Press (OUP)

    Professor Nektarios Tavernarakis, Dr Nikos C Kyrpides

  581. The integrated microbial genomes system: an expanding comparative analysis resource

    Article • Nucleic Acids Research, October 2009, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  582. Genome Project Standards in a New Era of Sequencing

    Article • Science, October 2009, American Association for the Advancement of Science

    Prof George M Garrity, Dr Nikos C Kyrpides

  583. Nikos Kyrpides on Gene Calling Standards at GSC8

    Article • October 2009, SciVee, Inc

    Dr Nikos C Kyrpides

  584. Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  585. Nikos Kyrpides on a GSC Global Genome Census at GSC8

    Article • September 2009, SciVee, Inc

    Dr Nikos C Kyrpides

  586. Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Dr Nikos C Kyrpides

  587. Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Dr Nikos C Kyrpides

  588. Complete genome sequence of Sanguibacter keddieii type strain (ST-74T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  589. Complete genome sequence of Saccharomonospora viridis type strain (P101T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  590. Complete genome sequence of Leptotrichia buccalis type strain (C-1013-bT)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  591. Complete genome sequence of Halogeometricum borinquense type strain (PR3T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  592. Complete genome sequence of Dyadobacter fermentans type strain (NS114T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  593. Complete genome sequence of Cryptobacterium curtum type strain (12-3T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  594. Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  595. Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  596. Complete genome sequence of Anaerococcus prevotii type strain (PC1T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  597. Complete genome sequence of Methanocorpusculum labreanum type strain Z

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Dr Nikos C Kyrpides

  598. Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)

    Article • Standards in Genomic Sciences, September 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  599. The genomic basis of trophic strategy in marine bacteria

    Article • Proceedings of the National Academy of Sciences, September 2009, Proceedings of the National Academy of Sciences

    Professor Diane McDougald, A/Prof Diane McDougald, Dr Nikos C Kyrpides

  600. The Integrated Microbial Genomes (IMG) System: An Expanding Comparative Analysis Resource

    Article • September 2009, Office of Scientific and Technical Information (OSTI)

    Dr Nikos C Kyrpides

  601. The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea

    Article • The ISME Journal, September 2009, Nature

    Professor Rolf Daniel, Dr Nikos C Kyrpides

  602. Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  603. Complete genome sequence of Kytococcus sedentarius type strain (541T)

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  604. Complete genome sequence of Desulfomicrobium baculatum type strain (XT)

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  605. Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10T)

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  606. Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T)

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  607. Complete genome sequence of Actinosynnema mirum type strain (101T)

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  608. Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  609. Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof George M Garrity, Dr Nikos C Kyrpides

  610. Standards in Genomic Sciences

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Prof George M Garrity, Dr Nikos C Kyrpides

  611. The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

    Article • Standards in Genomic Sciences, July 2009, Springer Science + Business Media

    Dr Nikos C Kyrpides

  612. Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream

    Article • Nature Biotechnology, July 2009, Springer Science + Business Media

    Dr Nikos C Kyrpides

  613. IMG ER: a system for microbial genome annotation expert review and curation

    Article • Bioinformatics, June 2009, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  614. Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens

    Article • PLoS ONE, June 2009, PLOS

    Dr Nikos C Kyrpides

  615. Focus:Synergistetes

    Article • Environmental Microbiology, June 2009, Wiley

    Dr Nikos C Kyrpides

  616. IMG ER: A System for Microbial Genome Annotation Expert Review and Curation

    Article • May 2009, Office of Scientific and Technical Information (OSTI)

    Dr Nikos C Kyrpides

  617. A changing of the guard

    Article • Environmental Microbiology, March 2009, Wiley

    Dr Nikos C Kyrpides

  618. Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach

    Article • Nucleic Acids Research, February 2009, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  619. Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii

    Article • PLoS ONE, January 2009, PLOS

    Professor Bharat Patel, Dr Nikos C Kyrpides

  620. Microbial co-habitation and lateral gene transfer: what transposases can tell us

    Article • Genome Biology, January 2009, Springer Science + Business Media

    Dr Nikos C Kyrpides

  621. The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Dr Nikos C Kyrpides

  622. Prokaryotic community profiles at different operational stages of a Greek solar saltern

    Article • Research in Microbiology, November 2008, Elsevier

    Dr Nikos C Kyrpides

  623. Annotation of metagenome short reads using proxygenes

    Article • Bioinformatics, August 2008, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  624. A korarchaeal genome reveals insights into the evolution of the Archaea

    Article • Proceedings of the National Academy of Sciences, June 2008, Proceedings of the National Academy of Sciences

    Dr Nikos C Kyrpides

  625. Toward a Standards-Compliant Genomic and Metagenomic Publication Record

    Article • OMICS A Journal of Integrative Biology, June 2008, Mary Ann Liebert Inc

    Prof George M Garrity, Dr Nikos C Kyrpides

  626. Meeting Report: The Fifth Genomic Standards Consortium (GSC) Workshop

    Article • OMICS A Journal of Integrative Biology, June 2008, Mary Ann Liebert Inc

    Prof George M Garrity, Dr Nikos C Kyrpides

  627. Meeting Report: The Fourth Genomic Standards Consortium (GSC) Workshop

    Article • OMICS A Journal of Integrative Biology, June 2008, Mary Ann Liebert Inc

    Prof George M Garrity, Dr Nikos C Kyrpides

  628. Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation

    Article • OMICS A Journal of Integrative Biology, June 2008, Mary Ann Liebert Inc

    Prof George M Garrity, Dr Nikos C Kyrpides

  629. Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata

    Article • OMICS A Journal of Integrative Biology, June 2008, Mary Ann Liebert Inc

    Dr Nikos C Kyrpides

  630. Laying the Foundation for a Genomic Rosetta Stone: Creating Information Hubs through the Use of Consensus Identifiers

    Article • OMICS A Journal of Integrative Biology, June 2008, Mary Ann Liebert Inc

    Dr Nikos C Kyrpides

  631. The minimum information about a genome sequence (MIGS) specification

    Article • Nature Biotechnology, May 2008, Springer Science + Business Media

    Professor Julian Parkhill, Dr Andrew J Spiers, Prof George M Garrity, Dr Robert A Edwards, Dr Nikos C Kyrpides

  632. Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction

    Article • Journal of Bacteriology, February 2008, ASM Journals

    Dr Nikos C Kyrpides

  633. A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

    Article • Genome Biology, January 2008, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Nikos C Kyrpides

  634. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

    Article • Nucleic Acids Research, December 2007, Oxford University Press (OUP)

    Professor Nektarios Tavernarakis, Dr Nikos C Kyrpides

  635. IMG/M: a data management and analysis system for metagenomes

    Article • Nucleic Acids Research, December 2007, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  636. The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

    Article • Nucleic Acids Research, December 2007, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  637. Using IMG: Comparative Analysis with the Integrated MicrobialGenomes System

    Article • December 2007, Office of Scientific and Technical Information (OSTI)

    Dr Nikos C Kyrpides

  638. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

    Article • Nature, November 2007, Springer Science + Business Media

    Dr Susannah Green Tringe, Professor Giselle Tamayo-Castillo, Dr Nikos C Kyrpides

  639. CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

    Article • BMC Bioinformatics, June 2007, Springer Science + Business Media

    Dr Nikos C Kyrpides

  640. Bringing large-scale multiple genome analysis one step closer: ScalaBLAST and beyond

    Article • June 2007, Office of Scientific and Technical Information (OSTI)

    Dr Nikos C Kyrpides

  641. The Korarchaeota: Archaeal orphans representing an ancestral lineage of life

    Article • May 2007, Office of Scientific and Technical Information (OSTI)

    Dr Nikos C Kyrpides

  642. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

    Article • Nature Methods, April 2007, Springer Science + Business Media

    Dr Nikos C Kyrpides

  643. The Positive Role of the Ecological Community in the Genomic Revolution

    Article • Microbial Ecology, April 2007, Springer Science + Business Media

    Dr Nikos C Kyrpides

  644. Genome Sequence and Analysis of the Soil Cellulolytic Actinomycete Thermobifida fusca YX

    Article • Journal of Bacteriology, January 2007, ASM Journals

    Dr Nikos C Kyrpides

  645. Comparative Genome Analysis in the Integrated Microbial Genomes (IMG) System

    Article • January 2007, Springer Science + Business Media

    Dr Nikos C Kyrpides

  646. Corrigendum

    Article • Bioinformatics, October 2006, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  647. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

    Article • Nature Biotechnology, September 2006, Springer Science + Business Media

    Dr Nikos C Kyrpides

  648. Symbiosis insights through metagenomic analysis of a microbial consortium

    Article • Nature, September 2006, Nature

    Dr Nikos C Kyrpides

  649. An experimental metagenome data management and analysis system

    Article • Bioinformatics, July 2006, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  650. The Genome of the Obligately Intracellular Bacterium Ehrlichia canis Reveals Themes of Complex Membrane Structure and Immune Evasion Strategies

    Article • Journal of Bacteriology, June 2006, ASM Journals

    Dr Nikos C Kyrpides

  651. The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide

    Article • Nucleic Acids Research, January 2006, Oxford University Press (OUP)

    Professor Nektarios Tavernarakis, Dr Nikos C Kyrpides

  652. The integrated microbial genomes (IMG) system

    Article • Nucleic Acids Research, January 2006, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  653. Comparative genome analysis ofBacillus cereusgroup genomes withBacillus subtilis

    Article • FEMS Microbiology Letters, September 2005, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  654. Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000

    Article • Proceedings of the National Academy of Sciences, July 2005, Proceedings of the National Academy of Sciences

    Dr Nikos C Kyrpides

  655. The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode

    Article • PLoS Biology, March 2005, PLOS

    Professor Elodie Ghedin, Dr Nikos C Kyrpides

  656. Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus

    Article • Nature Biotechnology, November 2004, Springer Science + Business Media

    Dr Nikos C Kyrpides

  657. Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

    Article • Journal of Bacteriology, October 2003, ASM Journals

    Dr Nikos C Kyrpides, Withmore Williams Associate Professor Erzsébet Regan, Gabor Balazsi

  658. Genome Analysis of F. nucleatum sub spp vincentii and Its Comparison With the Genome of F. nucleatum ATCC 25586

    Article • Genome Research, May 2003, Cold Spring Harbor Laboratory Press

    Dr Nikos C Kyrpides

  659. Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis

    Article • Nature, May 2003, Springer Science + Business Media

    Dr Nikos C Kyrpides

  660. The ERGOTM genome analysis and discovery system

    Article • Nucleic Acids Research, January 2003, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  661. Draft Sequencing and Comparative Genomics of Xylella fastidiosa Strains Reveal Novel Biological Insights

    Article • Genome Research, September 2002, Cold Spring Harbor Laboratory Press

    Dr Robert A Edwards, Dr Nikos C Kyrpides

  662. Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains

    Article • Proceedings of the National Academy of Sciences, August 2002, Proceedings of the National Academy of Sciences

    Dr Nikos C Kyrpides

  663. Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586

    Article • Journal of Bacteriology, April 2002, ASM Journals

    Dr Nikos C Kyrpides

  664. The genome sequence of the facultative intracellular pathogen Brucella melitensis

    Article • Proceedings of the National Academy of Sciences, December 2001, Proceedings of the National Academy of Sciences

    Dr Nikos C Kyrpides

  665. Structural and functional features of the intracellular amino terminus of DEG/ENaC ion channels

    Article • Current Biology, March 2001, Elsevier

    Professor Nektarios Tavernarakis, Dr Nikos C Kyrpides

  666. Cross-talk between catalytic and regulatory elements in a DEAD motor domain is essential for SecA function

    Article • The EMBO Journal, March 2001, Wiley

    Dr Nikos C Kyrpides

  667. Genome of Methanocaldococcus (methanococcus) jannaschii

    Article • January 2001, Elsevier

    William Whitman, Dr Nikos C Kyrpides

  668. Genomes OnLine Database (GOLD): a monitor of genome projects world-wide

    Article • Nucleic Acids Research, January 2001, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  669. Article • Photosynthesis Research, January 2001, Springer Science + Business Media

    Dr Nikos C Kyrpides

  670. Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools

    Article • Nucleic Acids Research, November 2000, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  671. WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

    Article • Nucleic Acids Research, January 2000, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  672. The SPFH domain: implicated in regulating targeted protein turnover in stomatins and other membrane-associated proteins

    Article • Trends in Biochemical Sciences, November 1999, Elsevier

    Professor Nektarios Tavernarakis, Dr Nikos C Kyrpides

  673. Universal Protein Families and the Functional Content of the Last Universal Common Ancestor

    Article • Journal of Molecular Evolution, October 1999, Springer Science + Business Media

    Dr Nikos C Kyrpides

  674. Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide

    Article • Bioinformatics, September 1999, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  675. Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry?

    Article • Trends in Genetics, August 1999, Elsevier

    Dr Nikos C Kyrpides

  676. Transcription in Archaea

    Article • Proceedings of the National Academy of Sciences, July 1999, Proceedings of the National Academy of Sciences

    Dr Nikos C Kyrpides

  677. Identification of Protein-Tyrosine Phosphatases in Archaea

    Article • Journal of Molecular Evolution, May 1999, Springer Science + Business Media

    Dr Nikos C Kyrpides

  678. Whole-genome sequence annotation: 'Going wrong with confidence'

    Article • Molecular Microbiology, May 1999, Wiley

    Dr Nikos C Kyrpides

  679. Errors in Genome Reviews

    Article • September 1998, American Association for the Advancement of Science

    Dr Nikos C Kyrpides

  680. Tetratrico-peptide-repeat proteins in the archaeon Methanococcus jannaschii

    Article • Trends in Biochemical Sciences, July 1998, Elsevier

    Dr Nikos C Kyrpides

  681. Erratum: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

    Article • Nature, July 1998, Springer Science + Business Media

    Dr Nikos C Kyrpides

  682. A ferredoxin-like domain in RNA polymerase 30/40-kDa subunits

    Article • Trends in Biochemical Sciences, May 1998, Elsevier

    Dr Nikos C Kyrpides

  683. Archaeal translation initiation revisited: The initiation factor 2 and eukaryotic initiation factor 2B α-β-δ subunit families

    Article • Proceedings of the National Academy of Sciences, March 1998, Proceedings of the National Academy of Sciences

    Dr Nikos C Kyrpides

  684. Universally conserved translation initiation factors

    Article • Proceedings of the National Academy of Sciences, January 1998, Proceedings of the National Academy of Sciences

    Dr Nikos C Kyrpides

  685. ThiD-TenA: A Gene Pair Fusion in Eukaryotes

    Article • Journal of Molecular Evolution, December 1997, Springer Science + Business Media

    Dr Nikos C Kyrpides

  686. The core histone fold: Limits to functional versatility

    Article • Journal of Molecular Evolution, December 1996, Springer Science + Business Media

    Dr Nikos C Kyrpides

  687. KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins

    Article • Trends in Biochemical Sciences, November 1996, Elsevier

    Dr Nikos C Kyrpides

  688. The emergence of major cellular processes in evolution

    Article • FEBS Letters, July 1996, Wiley

    Dr Nikos C Kyrpides

  689. Parallel origins of the nucleosome core and eukaryotic transcription from Archaea

    Article • Journal of Molecular Evolution, February 1996, Springer Science + Business Media

    Dr Nikos C Kyrpides

  690. Methanococcus jannaschiiGenome: Revisited

    Article • Genome Science and Technology, January 1996, Mary Ann Liebert Inc

    Dr Nikos C Kyrpides

  691. A Transient GCN4 mRNA Destabilization Follows GCN4 Translational Derepression

    Article • Journal of Biological Chemistry, July 1995, American Society for Biochemistry & Molecular Biology (ASBMB)

    Professor Nektarios Tavernarakis, Dr Nikos C Kyrpides

  692. Nucleic acid-binding metabolic enzymes: Living fossils of stereochemical interactions?

    Article • Journal of Molecular Evolution, June 1995, Springer Science + Business Media

    Dr Nikos C Kyrpides

  693. The eubacterial transcriptional activator Lrp is present in the Archaeon Pyrococcus furiosus

    Article • Trends in Biochemical Sciences, April 1995, Elsevier

    Dr Nikos C Kyrpides

  694. Novel protein families in archaean genomes

    Article • Nucleic Acids Research, January 1995, Oxford University Press (OUP)

    Dr Nikos C Kyrpides

  695. On the evolution of arginases and related enzymes

    Article • Journal of Molecular Evolution, July 1994, Springer Science + Business Media

    Dr Nikos C Kyrpides

  696. Reverse Interpretation: A Hypothetical Selection Mechanism for Adaptive Mutagenesis Based on Autoregulated mRNA Stability

    Article • Journal of Theoretical Biology, April 1994, Elsevier

    Dr Nikos C Kyrpides

  697. Mechanisms of Specificity in mRNA Degradation: Autoregulation and Cognate Interactions

    Article • Journal of Theoretical Biology, August 1993, Elsevier

    Dr Nikos C Kyrpides

  698. Investigation of intracellular signals generated by γ-interferon and IL-4 leading to the induction of class II antigen expression

    Article • Mediators of Inflammation, January 1993, Hindawi Publishing Corporation

    Dr Nikos C Kyrpides

  699. Different Molecular Mechanisms Lead to Same Endpoints with Different Function: TNF-α Induces Non Functional CSF-1 Receptors on HL-60 Cells in Contrast to Interfer on-γ

    Article • Journal of Receptor Research, January 1992, Taylor & Francis

    Dr Nikos C Kyrpides

  700. The Role of IL-4 in Human Myeloid Leukemia: Stimulation of RNA Synthesis and Transduction of Differentiation Signals through an IL-4 Receptor Leads to Functional and HLA Positive HL-60 Cells

    Article • Leukemia & Lymphoma, January 1992, Taylor & Francis

    Dr Nikos C Kyrpides

  701. Evolutionary implications of duplications and Balbiani rings in Drosophila. A study of Drosophila serrata

    Article • Genome, August 1990, Canadian Science Publishing

    Dr Nikos C Kyrpides

  702. Comparative Genome Analysis in the Integrated Microbial Genomes (IMG) System

    Article • Springer Science + Business Media

    Dr Nikos C Kyrpides