All Stories

  1. Toward an integrative framework for monitoring biodegradation of environmental contaminants across scales

    Article • Current Opinion in Biotechnology, June 2026, Elsevier

    Dr Susannah Green Tringe

  2. Unraveling the ecological success of Iodidimonas in a bioreactor treating oil and gas produced water

    Article • Microbiology Spectrum, August 2025, ASM Journals

    Dr Susannah Green Tringe

  3. A call to preserve wild relatives of crop plants and their associated microbes

    Article • Nature Communications, July 2025, Springer Science + Business Media

    Dr Susannah Green Tringe, Senior Director, Science and Conservation, San Diego Botanic Garden Colin K. Khoury

  4. Legacy Effects of Cropping System and Precipitation Influence the Core Camelina sativa Microbiome

    Article • Phytobiomes Journal, May 2025, Scientific Societies

    Dr Susannah Green Tringe

  5. The gut microbiome of the Passalid beetle has high cellulolytic potential and constitutes an unrecognized system for production of greenhouse gasses in neotropical forests

    Article • May 2025, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  6. Breeding of microbiomes conferring salt tolerance to plants

    Article • January 2025, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  7. Tighter-knit microbial communities associated with stressed plants

    Article • Phytobiomes Journal, September 2024, Scientific Societies

    Dr Susannah Green Tringe

  8. Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost

    Article • mSphere, June 2024, ASM Journals

    Dr Susannah Green Tringe

  9. Microbial Ecology and Site Characteristics Underlie Differences in Salinity‐Methane Relationships in Coastal Wetlands

    Article • Journal of Geophysical Research Biogeosciences, June 2024, American Geophysical Union (AGU)

    Dr Susannah Green Tringe

  10. Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland

    Article • ISME Communications, March 2024, Oxford University Press (OUP)

    Dr Susannah Green Tringe

  11. One Health, climate change, and infectious microbes: a joint effort between AGU and ASM to understand impacts of changing climate and microbes on human well-being across scales

    Article • mSphere, January 2024, ASM Journals

    Dr Susannah Green Tringe

  12. Elevated methane emissions in low-salinity wetlands linked to microbial communities

    Article • mSystems, January 2024, ASM Journals

    Dr Susannah Green Tringe

  13. Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum

    Article • mSystems, December 2023, ASM Journals

    Dr Susannah Green Tringe

  14. Unraveling the functional dark matter through global metagenomics

    Article • Nature, October 2023, Springer Science + Business Media

    Dr Susannah Green Tringe

  15. Conservation of beneficial microbes between the rhizosphere and the cyanosphere

    Article • New Phytologist, September 2023, Wiley

    Dr Susannah Green Tringe

  16. Metagenomics untangles metabolic adaptations of Antarctic endolithic bacteria at the fringe of habitability

    Article • July 2023, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  17. Long-Term Persistence of Three Microbial Wildfire Biomarkers in Forest Soils

    Article • Forests, July 2023, MDPI AG

    Dr Susannah Green Tringe, Dr. Manuel Fernandez-Lopez

  18. Correction: Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons

    Article • The ISME Journal, June 2023, Springer Science + Business Media

    Dr Susannah Green Tringe

  19. Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability

    Article • Microbiome, May 2023, Springer Science + Business Media

    Dr Susannah Green Tringe

  20. Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms

    Article • Data in Brief, April 2023, Elsevier

    Dr Susannah Green Tringe

  21. Iodidimonas, a bacterium unable to degrade hydrocarbons, thrives in a bioreactor treating oil and gas produced water

    Article • March 2023, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  22. Root associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum

    Article • February 2023, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  23. Methyl-Based Methanogenesis: an Ecological and Genomic Review

    Article • Microbiology and Molecular Biology Reviews, January 2023, ASM Journals

    Dr Susannah Green Tringe

  24. Poisson hurdle model-based method for clustering microbiome features

    Article • Bioinformatics, December 2022, Oxford University Press (OUP)

    Dr Susannah Green Tringe

  25. Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability

    Article • December 2022, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  26. High-Quality Draft Genome Sequence of Fischerella thermalis JSC-11, a Siderophilic Cyanobacterium with Bioremediation Potential

    Article • Microbiology Resource Announcements, October 2022, ASM Journals

    Dr Susannah Green Tringe

  27. Expansion of the global RNA virome reveals diverse clades of bacteriophages

    Article • Cell, October 2022, Elsevier

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  28. Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA

    Article • Microbiology Resource Announcements, August 2022, ASM Journals

    Dr Susannah Green Tringe

  29. The role of zinc in the adaptive evolution of polar phytoplankton

    Article • Nature Ecology & Evolution, June 2022, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  30. Thousands of small, novel genes predicted in global phage genomes

    Article • Cell Reports, June 2022, Elsevier

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  31. A toolkit for microbial community editing

    Article • Nature Reviews Microbiology, May 2022, Springer Science + Business Media

    Dr Susannah Green Tringe

  32. Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons

    Article • The ISME Journal, May 2022, Springer Science + Business Media

    Dr Susannah Green Tringe

  33. Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans

    Article • Microbiome, April 2022, Springer Science + Business Media

    Dr Susannah Green Tringe

  34. Correction: Bueno de Mesquita et al. Methylphosphonate Degradation and Salt-Tolerance Genes of Two Novel Halophilic Marivita Metagenome-Assembled Genomes from Unrestored Solar Salterns. Genes 2022, 13, 148

    Article • Genes, March 2022, MDPI AG

    Dr Susannah Green Tringe

  35. Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems

    Article • mBio, February 2022, ASM Journals

    Max Kolton, Dr Susannah Green Tringe

  36. Membrane Bioreactor Pretreatment of High-Salinity O&G Produced Water

    Article • ACS ES&T Water, February 2022, American Chemical Society (ACS)

    Dr Susannah Green Tringe

  37. Exploring the roles of microbes in facilitating plant adaptation to climate change

    Article • Biochemical Journal, February 2022, Portland Press Ltd.

    Dr Susannah Green Tringe

  38. Methylphosphonate Degradation and Salt-Tolerance Genes of Two Novel Halophilic Marivita Metagenome-Assembled Genomes from Unrestored Solar Salterns

    Article • Genes, January 2022, MDPI AG

    Dr Susannah Green Tringe

  39. Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential

    Article • Journal of Environmental Management, December 2021, Elsevier

    Dr Susannah Green Tringe

  40. Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern

    Article • Genes, October 2021, MDPI AG

    Dr Susannah Green Tringe

  41. The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

    Article • Nature Communications, September 2021, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  42. Peatland microbial community responses to plant functional group and drought are depth‐dependent

    Article • Molecular Ecology, September 2021, Wiley

    Dr Susannah Green Tringe

  43. Microbial drivers of methane emissions from unrestored industrial salt ponds

    Article • The ISME Journal, July 2021, Springer Science + Business Media

    Dr Susannah Green Tringe

  44. Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization

    Article • BMC Bioinformatics, July 2021, Springer Science + Business Media

    Dr Susannah Green Tringe

  45. High-Quality Draft Genome Sequence of the Siderophilic and Thermophilic Leptolyngbyaceae Cyanobacterium JSC-12

    Article • Microbiology Resource Announcements, June 2021, ASM Journals

    Dr Susannah Green Tringe

  46. Different threats, same response

    Article • Nature Plants, May 2021, Springer Science + Business Media

    Dr Susannah Green Tringe

  47. Identification of beneficial and detrimental bacteria that impact sorghum responses to drought using multi-scale and multi-system microbiome comparisons

    Article • April 2021, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  48. Author Correction: A genomic catalog of Earth’s microbiomes

    Article • Nature Biotechnology, April 2021, Springer Science + Business Media

    Dr Susannah Green Tringe, Gerard Muyzer, PhD David Paez-Espino, Professor Adam P Arkin, Dr Nikos C Kyrpides

  49. Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages

    Article • Microbiome, March 2021, Springer Science + Business Media

    Dr Susannah Green Tringe

  50. Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes

    Article • Frontiers in Microbiology, March 2021, Frontiers

    Dr Susannah Green Tringe

  51. Author Correction: Plant–microbiome interactions: from community assembly to plant health

    Article • Nature Reviews Microbiology, November 2020, Springer Science + Business Media

    Dr Susannah Green Tringe, Professor Brajesh K Singh

  52. Publisher Correction: A genomic catalog of Earth’s microbiomes

    Article • Nature Biotechnology, November 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides, Dr Susannah Green Tringe, PhD David Paez-Espino, Professor Adam P Arkin

  53. A genomic catalog of Earth’s microbiomes

    Article • Nature Biotechnology, November 2020, Springer Science + Business Media

    Dr Nikos C Kyrpides, Dr Susannah Green Tringe, Gerard Muyzer, PhD David Paez-Espino, Professor Adam P Arkin

  54. Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research

    Article • Frontiers in Microbiology, November 2020, Frontiers

    Dr Susannah Green Tringe

  55. Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

    Article • The ISME Journal, September 2020, Springer Science + Business Media

    Dr Susannah Green Tringe

  56. Emerging Trends in Biological Treatment of Wastewater From Unconventional Oil and Gas Extraction

    Article • Frontiers in Microbiology, September 2020, Frontiers

    Dr Susannah Green Tringe

  57. Plant–microbiome interactions: from community assembly to plant health

    Article • Nature Reviews Microbiology, August 2020, Springer Science + Business Media

    Dr Susannah Green Tringe, Professor Brajesh K Singh

  58. Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization

    Article • August 2020, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  59. Metagenome-assembled genomes of phytoplankton communities across the Arctic Circle

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  60. Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla

    Article • PLOS One, April 2020, PLOS

    Dr Susannah Green Tringe

  61. Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities

    Article • Microbiology Resource Announcements, March 2020, ASM Journals

    Dr Susannah Green Tringe

  62. Antarctic cryptoendolithic bacterial lineages of pre-Cambrian origin as proxy for Mars colonization

    Article • February 2020, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  63. Clades of huge phages from across Earth’s ecosystems

    Article • Nature, February 2020, Springer Science + Business Media

    Dr Susannah Green Tringe

  64. Niche differentiation is spatially and temporally regulated in the rhizosphere

    Article • The ISME Journal, January 2020, Springer Science + Business Media

    Dr Susannah Green Tringe

  65. Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

    Article • January 2020, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  66. Microbial Community Dynamics of a Membrane Bioreactor Treating Hydraulic Fracturing Wastewater

    Article • January 2020, Geochemical Society

    Dr Susannah Green Tringe

  67. Community-Driven Metadata Standards for Agricultural Microbiome Research

    Article • Phytobiomes Journal, January 2020, Scientific Societies

    Dr Susannah Green Tringe

  68. Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community

    Article • mBio, December 2019, ASM Journals

    Dr Susannah Green Tringe

  69. Diversity, evolution, and classification of virophages uncovered through global metagenomics

    Article • Microbiome, December 2019, Springer Science + Business Media

    PhD David Paez-Espino, Dr Nikos C Kyrpides, Dr Susannah Green Tringe

  70. Division of labor in honey bee gut microbiota for plant polysaccharide digestion

    Article • Proceedings of the National Academy of Sciences, November 2019, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe, Prof. Hao Zheng

  71. Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide

    Article • European Journal of Phycology, November 2019, Taylor & Francis

    Dr Susannah Green Tringe

  72. A layered defense against plant pathogens

    Article • Science, November 2019, American Association for the Advancement of Science

    Dr Susannah Green Tringe

  73. Interactions between plants and soil shaping the root microbiome under abiotic stress

    Article • Biochemical Journal, October 2019, Portland Press Ltd.

    Dr Susannah Green Tringe

  74. Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots

    Article • Microbiology Resource Announcements, September 2019, ASM Journals

    Dr Susannah Green Tringe

  75. Metatranscriptomic Analyses of Diel Metabolic Functions During a Microcystis Bloom in Western Lake Erie (United States)

    Article • Frontiers in Microbiology, September 2019, Frontiers

    Dr Susannah Green Tringe

  76. Metagenomes in the borderline ecosystems of the Antarctic cryptoendolithic communities

    Article • August 2019, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  77. Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor

    Article • Water Research, July 2019, Elsevier

    Dr Susannah Green Tringe

  78. mSphere of Influence: the View from the Microbiologists of the Future

    Article • mSphere, June 2019, ASM Journals

    Dr Susannah Green Tringe

  79. Niche differentiation is spatially and temporally regulated in the rhizosphere

    Article • April 2019, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  80. Unusual metabolism and hypervariation in the genome of a Gracilibacteria (BD1-5) from an oil degrading community

    Article • April 2019, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  81. Clades of huge phage from across Earth’s ecosystems

    Article • March 2019, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  82. Insight into the Bacterial Endophytic Communities of Peach Cultivars Related to Crown Gall Disease Resistance

    Article • Applied and Environmental Microbiology, March 2019, ASM Journals

    Dr Susannah Green Tringe

  83. Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis

    Article • Plant Direct, March 2019, Wiley

    Dr Susannah Green Tringe

  84. Completion of an Experiment

    Article • mSphere, December 2018, ASM Journals

    Dr Susannah Green Tringe

  85. Minimum Information about an Uncultivated Virus Genome (MIUViG)

    Article • Nature Biotechnology, December 2018, Springer Science + Business Media

    Dr Nikos C Kyrpides, Dr Jens H. Kuhn, Dr Susannah Green Tringe

  86. Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils

    Article • FEMS Microbiology Ecology, November 2018, Oxford University Press (OUP)

    Dr Susannah Green Tringe

  87. Phototrophic co-cultures from extreme environments: community structure and potential value for fundamental and applied research

    Article • October 2018, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  88. Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2

    Article • Soil Biology and Biochemistry, October 2018, Elsevier

    Dr Susannah Green Tringe

  89. Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States

    Article • Frontiers in Microbiology, August 2018, Frontiers

    Dr Susannah Green Tringe

  90. New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes

    Article • Frontiers in Microbiology, July 2018, Frontiers

    Dr Susannah Green Tringe

  91. Erratum: California voters and CIRM—will lightning strike twice?

    Article • Nature Biotechnology, July 2018, Springer Science + Business Media

    Dr Nikos C Kyrpides, Dr Susannah Green Tringe

  92. Large-scale replicated field study of maize rhizosphere identifies heritable microbes

    Article • Proceedings of the National Academy of Sciences, June 2018, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe

  93. Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy

    Article • Nature Microbiology, May 2018, Springer Science + Business Media

    Dr Susannah Green Tringe

  94. Discovery of enzymes for toluene synthesis from anoxic microbial communities

    Article • Nature Chemical Biology, March 2018, Springer Science + Business Media

    Dr Harry Beller, Dr Susannah Green Tringe

  95. Peatland Acidobacteria with a dissimilatory sulfur metabolism

    Article • The ISME Journal, February 2018, Springer Science + Business Media

    Dr Susannah Green Tringe

  96. Landscape topography structures the soil microbiome in arctic polygonal tundra

    Article • Nature Communications, February 2018, Springer Science + Business Media

    Dr Susannah Green Tringe

  97. Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil

    Article • Nature Ecology & Evolution, January 2018, Springer Science + Business Media

    Dr Susannah Green Tringe

  98. An overview of a book devoted to metagenomics methods and applications

    Article • January 2018, Elsevier

    Dr Susannah Green Tringe

  99. Genomic features of bacterial adaptation to plants

    Article • Nature Genetics, December 2017, Springer Science + Business Media

    Dr Susannah Green Tringe

  100. Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

    Article • The ISME Journal, December 2017, Springer Science + Business Media

    Sarahi L. Garcia, Dr Susannah Green Tringe

  101. Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

    Article • Standards in Genomic Sciences, November 2017, Springer Science + Business Media

    Dr Susannah Green Tringe

  102. A compendium of multi-omic sequence information from the Saanich Inlet water column

    Article • Scientific Data, October 2017, Springer Science + Business Media

    Dr Susannah Green Tringe

  103. Taxonomic and Functional Diversity of a Quercus pyrenaica Willd. Rhizospheric Microbiome in the Mediterranean Mountains

    Article • Forests, October 2017, MDPI AG

    Dr Susannah Green Tringe, Dr. Manuel Fernandez-Lopez

  104. PeatlandAcidobacteriawith a dissimilatory sulfur metabolism

    Article • October 2017, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  105. Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes

    Article • mSphere, September 2017, ASM Journals

    Dr Susannah Green Tringe

  106. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Article • Nature Biotechnology, August 2017, Springer Science + Business Media

    Prof. Jonathan A. Eisen, Dr Susannah Green Tringe, Dr Nikos C Kyrpides, William Nelson

  107. A genomic perspective on stoichiometric regulation of soil carbon cycling

    Article • The ISME Journal, July 2017, Nature

    Dr Susannah Green Tringe

  108. Microbiome of burned holm-oak: Arthrobacter's role

    Article • Scientific Reports, July 2017, Nature

    Dr Susannah Green Tringe, Dr. Manuel Fernandez-Lopez

  109. Single-cell genomics for the masses

    Article • Nature Biotechnology, July 2017, Nature

    Dr Susannah Green Tringe

  110. Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

    Article • Microbiome, June 2017, Springer Science + Business Media

    Dr Susannah Green Tringe

  111. Patterns and drivers of fungal community depth stratification in Sphagnum peat

    Article • FEMS Microbiology Ecology, June 2017, Oxford University Press (OUP)

    Dr Susannah Green Tringe

  112. Ecophysiology of freshwater Verrucomicrobia inferred from metagenome-assembled genomes

    Article • June 2017, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  113. Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach

    Article • PLOS One, May 2017, PLOS

    Dr Susannah Green Tringe

  114. Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

    Article • PeerJ, April 2017, PeerJ

    Dr Susannah Green Tringe

  115. The Tale of a Neglected Energy Source: Elevated Hydrogen Exposure Affects both Microbial Diversity and Function in Soil

    Article • Applied and Environmental Microbiology, March 2017, ASM Journals

    Dr Susannah Green Tringe

  116. Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation

    Article • Environmental Science & Technology, February 2017, American Chemical Society (ACS)

    Dr Susannah Green Tringe

  117. Optimizing genome bins with DAS Tool

    Article • February 2017, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  118. Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions

    Article • Applied and Environmental Microbiology, February 2017, ASM Journals

    Dr Susannah Green Tringe

  119. Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms

    Article • Molecular Ecology, February 2017, Wiley

    Dr Babur S Mirza, Dr Susannah Green Tringe

  120. Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

    Article • November 2016, PeerJ

    Dr Susannah Green Tringe

  121. Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

    Article • November 2016, PeerJ

    Dr Susannah Green Tringe

  122. Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

    Article • PeerJ, November 2016, PeerJ

    Dr Susannah Green Tringe

  123. Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

    Article • October 2016, Cold Spring Harbor Laboratory Press

    Sarahi L. Garcia, Dr Susannah Green Tringe

  124. Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

    Article • September 2016, PeerJ

    Dr Susannah Green Tringe

  125. In vitro Characterization of Phenylacetate Decarboxylase, a Novel Enzyme Catalyzing Toluene Biosynthesis in an Anaerobic Microbial Community

    Article • Scientific Reports, August 2016, Nature

    Dr Harry Beller, Dr Susannah Green Tringe

  126. Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

    Article • Nature Communications, July 2016, Nature

    Dr Susannah Green Tringe

  127. ‘Candidatus Adiutrix intracellularis’, an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen

    Article • Environmental Microbiology, April 2016, Wiley

    Aram Mikaelyan, Dr Susannah Green Tringe, Andreas Brune

  128. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

    Article • The ISME Journal, March 2016, Nature

    Dr Susannah Green Tringe

  129. H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups

    Article • PeerJ, March 2016, PeerJ

    Dr Susannah Green Tringe

  130. Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

    Article • Frontiers in Microbiology, February 2016, Frontiers

    Dr Susannah Green Tringe, Gerard Muyzer

  131. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

    Article • Frontiers in Microbiology, February 2016, Frontiers

    Dr Susannah Green Tringe

  132. The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

    Article • Frontiers in Microbiology, February 2016, Frontiers

    Dr Susannah Green Tringe

  133. High-resolution phylogenetic microbial community profiling

    Article • The ISME Journal, February 2016, Nature

    Dr Susannah Green Tringe

  134. Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

    Article • The ISME Journal, January 2016, Nature

    Dr Susannah Green Tringe

  135. Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis

    Article • The ISME Journal, November 2015, Nature

    Dr Susannah Green Tringe

  136. Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

    Article • Frontiers in Microbiology, October 2015, Frontiers

    Professor Adam P Arkin, Dr Susannah Green Tringe

  137. Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community

    Article • BMC Genomics, October 2015, Springer Science + Business Media

    Dr Susannah Green Tringe

  138. Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

    Article • New Phytologist, October 2015, Wiley

    Dr Susannah Green Tringe

  139. Primer and platform effects on 16S rRNA tag sequencing

    Article • Frontiers in Microbiology, August 2015, Frontiers

    Dr Susannah Green Tringe

  140. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

    Article • Science, July 2015, American Association for the Advancement of Science

    Dr Susannah Green Tringe

  141. Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous ‘streamer’ community

    Article • The ISME Journal, July 2015, Nature

    Dr Susannah Green Tringe, Prof. Dr. Dr. h.c. Michael Wagner

  142. The Joint Genome Institute Offers Resources Beyond a Core Facility

    Article • Microbe Magazine, July 2015, ASM Journals

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  143. Patterns in Wetland Microbial Community Composition and Functional Gene Repertoire Associated with Methane Emissions

    Article • mBio, May 2015, ASM Journals

    Dr Susannah Green Tringe

  144. Elviz – exploration of metagenome assemblies with an interactive visualization tool

    Article • BMC Bioinformatics, April 2015, Springer Science + Business Media

    Dr Susannah Green Tringe

  145. Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

    Article • Current Biology, March 2015, Elsevier

    Dr Susannah Green Tringe

  146. Diverse uncultivated ultra-small bacterial cells in groundwater

    Article • Nature Communications, February 2015, Springer Science + Business Media

    Dr Susannah Green Tringe

  147. Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

    Article • Genome Research, February 2015, Cold Spring Harbor Laboratory Press

    Dr Susannah Green Tringe

  148. Aquifer environment selects for microbial species cohorts in sediment and groundwater

    Article • The ISME Journal, February 2015, Springer Science + Business Media

    Dr Susannah Green Tringe

  149. High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

    Article • mBio, January 2015, ASM Journals

    Dr Susannah Green Tringe

  150. Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

    Article • The ISME Journal, January 2015, Springer Science + Business Media

    Dr Susannah Green Tringe

  151. Genome Portal, Joint Genome Institute

    Article • January 2015, Springer Science + Business Media

    Dr Susannah Green Tringe

  152. Corrigendum to Wagneret al.: Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative

    Article • Ecology Letters, December 2014, Wiley

    Dr Susannah Green Tringe

  153. Metagenomes from two microbial consortia associated with Santa Barbara seep oil

    Article • Marine Genomics, December 2014, Elsevier

    Dr Susannah Green Tringe

  154. Convergent Bacterial Microbiotas in the Fungal Agricultural Systems of Insects

    Article • mBio, November 2014, ASM Journals

    Dr Susannah Green Tringe, Cameron R Currie

  155. Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk

    Article • Proceedings of the National Academy of Sciences, November 2014, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe

  156. FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

    Article • Nucleic Acids Research, September 2014, Oxford University Press (OUP)

    Dr Susannah Green Tringe

  157. Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling

    Article • Frontiers in Microbiology, July 2014, Frontiers

    Dr Susannah Green Tringe

  158. Erratum: Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

    Article • The ISME Journal, July 2014, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  159. Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance

    Article • Frontiers in Microbiology, June 2014, Frontiers

    Dr Susannah Green Tringe

  160. Rearrangement of a Large Novel Pseudomonas aeruginosa Gene Island in Strains Isolated from a Patient Developing Ventilator-Associated Pneumonia

    Article • Journal of Clinical Microbiology, April 2014, ASM Journals

    Dr Susannah Green Tringe

  161. Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative

    Article • Ecology Letters, April 2014, Wiley

    Dr Susannah Green Tringe

  162. Correction for Howe et al., Tackling soil diversity with the assembly of large, complex metagenomes

    Article • Proceedings of the National Academy of Sciences, April 2014, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe

  163. Tackling soil diversity with the assembly of large, complex metagenomes

    Article • Proceedings of the National Academy of Sciences, March 2014, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe

  164. Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

    Article • The ISME Journal, February 2014, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  165. Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Dr Susannah Green Tringe

  166. MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

    Article • Microbiome, January 2014, Springer Science + Business Media

    Dr Susannah Green Tringe

  167. Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities

    Article • Applied and Environmental Microbiology, October 2013, ASM Journals

    Dr Susannah Green Tringe

  168. IMG/M 4 version of the integrated metagenome comparative analysis system

    Article • Nucleic Acids Research, October 2013, Oxford University Press (OUP)

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  169. High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

    Article • Proceedings of the National Academy of Sciences, September 2013, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  170. Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle

    Article • PLOS One, September 2013, PLOS

    Dr Susannah Green Tringe

  171. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

    Article • Nature Communications, August 2013, Springer Science + Business Media

    Jonathan Eisen, Dr Susannah Green Tringe, Prof. Jonathan A. Eisen

  172. Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill

    Article • The ISME Journal, August 2013, Springer Science + Business Media

    Dr Susannah Green Tringe

  173. Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal

    Article • The ISME Journal, July 2013, Springer Science + Business Media

    Dr Susannah Green Tringe

  174. Proteogenomic Analysis of a Thermophilic Bacterial Consortium Adapted to Deconstruct Switchgrass

    Article • PLOS One, July 2013, PLOS

    Dr Susannah Green Tringe

  175. Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

    Article • Nature Communications, May 2013, Springer Science + Business Media

    Dr Susannah Green Tringe

  176. Leucoagaricus gongylophorus Produces Diverse Enzymes for the Degradation of Recalcitrant Plant Polymers in Leaf-Cutter Ant Fungus Gardens

    Article • Applied and Environmental Microbiology, April 2013, ASM Journals

    Cameron R Currie, Dr Susannah Green Tringe

  177. Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites

    Article • PLOS One, April 2013, PLOS

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  178. Diversity and heritability of the maize rhizosphere microbiome under field conditions

    Article • Proceedings of the National Academy of Sciences, April 2013, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe

  179. Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron

    Article • Standards in Genomic Sciences, February 2013, Springer Science + Business Media

    Dr Susannah Green Tringe, Professor Adam P Arkin

  180. A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between theMethylococcaceaeand theMethylophilaceae

    Article • PeerJ, February 2013, PeerJ

    Dr Susannah Green Tringe

  181. Community-wide plasmid gene mobilization and selection

    Article • The ISME Journal, February 2013, Springer Science + Business Media

    Dr Susannah Green Tringe

  182. Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    Dr. Huub JM Op den Camp, Professor Mike Jetten, Dr Susannah Green Tringe

  183. Genome Portal, Joint Genome Institute

    Article • January 2013, Springer Science + Business Media

    Dr Susannah Green Tringe

  184. Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry

    Article • Frontiers in Microbiology, January 2013, Frontiers

    Dr Susannah Green Tringe

  185. Community Structure and Function of High-Temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments

    Article • Frontiers in Microbiology, January 2013, Frontiers

    Dr Susannah Green Tringe

  186. The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling

    Article • Frontiers in Microbiology, January 2013, Frontiers

    Dr Susannah Green Tringe

  187. Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

    Article • Microbiome, January 2013, Springer Science + Business Media

    Dr Susannah Green Tringe

  188. Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages

    Article • Frontiers in Microbiology, January 2013, Frontiers

    Dr Susannah Green Tringe

  189. The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem

    Article • Frontiers in Microbiology, January 2013, Frontiers

    Dr Susannah Green Tringe

  190. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics

    Article • The ISME Journal, November 2012, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Ian P.G. Marshall

  191. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

    Article • The ISME Journal, November 2012, Springer Science + Business Media

    Dr Susannah Green Tringe

  192. Relationship between Abundance and Specific Activity of Bacterioplankton in Open Ocean Surface Waters

    Article • Applied and Environmental Microbiology, October 2012, ASM Journals

    Dr Susannah Green Tringe

  193. Global distribution of a wild alga revealed by targeted metagenomics

    Article • Current Biology, September 2012, Elsevier

    Dr Susannah Green Tringe

  194. Defining the core Arabidopsis thaliana root microbiome

    Article • Nature, August 2012, Springer Science + Business Media

    Ruth Ley, Dr Susannah Green Tringe

  195. Mesophilic and Thermophilic Conditions Select for Unique but Highly Parallel Microbial Communities to Perform Carboxylate Platform Biomass Conversion

    Article • PLOS One, June 2012, PLOS

    Dr Susannah Green Tringe

  196. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

    Article • The ISME Journal, June 2012, Oxford University Press (OUP)

    Professor Terry C Hazen, Dr Susannah Green Tringe

  197. Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

    Article • Environmental Microbiology, May 2012, Wiley

    Professor Terry C Hazen, Dr Susannah Green Tringe

  198. The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

    Article • PLOS One, May 2012, PLOS

    Dr Susannah Green Tringe

  199. The metagenome of the marine anammox bacterium ‘CandidatusScalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium

    Article • Environmental Microbiology, May 2012, Wiley

    Prof. Dr. Bas E. Dutilh, Dr. Huub JM Op den Camp, Professor Mike Jetten, Dr Susannah Green Tringe

  200. Metagenomic analysis of a stable trichloroethene-degrading microbial community

    Article • The ISME Journal, March 2012, Springer Science + Business Media

    Dr Susannah Green Tringe

  201. Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

    Article • The ISME Journal, March 2012, Springer Science + Business Media

    Dr Susannah Green Tringe, Cameron R Currie

  202. The metagenomic basis of anammox metabolism inCandidatus‘Brocadia fulgida’

    Article • Biochemical Society Transactions, February 2012, Portland Press Ltd.

    Dr Susannah Green Tringe

  203. Microbial Iron Cycling in Acidic Geothermal Springs of Yellowstone National Park: Integrating Molecular Surveys, Geochemical Processes, and Isolation of Novel Fe-Active Microorganisms

    Article • Frontiers in Microbiology, January 2012, Frontiers

    Professor Thomas Borch, Dr Susannah Green Tringe

  204. Bioprospecting Metagenomics for New Glycoside Hydrolases

    Article • January 2012, Springer Science + Business Media

    Dr Susannah Green Tringe

  205. Hydrazine Synthase, a Unique Phylomarker with Which To Study the Presence and Biodiversity of Anammox Bacteria

    Article • Applied and Environmental Microbiology, December 2011, ASM Journals

    Dr. Huub JM Op den Camp, Professor Mike Jetten, Dr Susannah Green Tringe

  206. The metagenomic basis of anammox metabolism inCandidatus‘Brocadia fulgida’

    Article • Biochemical Society Transactions, December 2011, Portland Press Ltd.

    Professor Mike Jetten, Dr Susannah Green Tringe

  207. Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome

    Article • Environmental Microbiology, October 2011, Wiley

    Dr Susannah Green Tringe, Dr Robert A Edwards

  208. Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

    Article • The ISME Journal, September 2011, Springer Science + Business Media

    Dr Susannah Green Tringe

  209. Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies

    Article • Science, July 2011, American Association for the Advancement of Science

    Dr Susannah Green Tringe

  210. The Enduring Legacy of Small Subunit rRNA in Microbiology

    Article • May 2011, Wiley

    Dr Susannah Green Tringe

  211. Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

    Article • Science, January 2011, American Association for the Advancement of Science

    Dr Susannah Green Tringe

  212. Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases

    Article • Biotechnology for Biofuels, January 2011, Springer Science + Business Media

    Dr Susannah Green Tringe

  213. An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity

    Article • PLoS Genetics, September 2010, PLOS

    Dr Timothy J Donohue, Dr Susannah Green Tringe, Cameron R Currie

  214. Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

    Article • Nature Chemical Biology, September 2010, Springer Science + Business Media

    Dr Susannah Green Tringe

  215. Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

    Article • The ISME Journal, August 2010, Springer Science + Business Media

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  216. Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production

    Article • Applied Microbiology and Biotechnology, July 2010, Springer Science + Business Media

    Dr Susannah Green Tringe

  217. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

    Article • Proceedings of the National Academy of Sciences, July 2010, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe

  218. Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

    Article • Proceedings of the National Academy of Sciences, July 2010, Proceedings of the National Academy of Sciences

    Dr Susannah Green Tringe

  219. Comparative Metagenomics of Freshwater Microbial Communities

    Article • May 2010, Office of Scientific and Technical Information (OSTI)

    Professor Terry C Hazen, Dr Susannah Green Tringe

  220. A call for standardized classification of metagenome projects

    Article • Environmental Microbiology, March 2010, Wiley

    Dr Susannah Green Tringe, Dr Nikos C Kyrpides

  221. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

    Article • The ISME Journal, February 2010, Oxford University Press (OUP)

    Professor Terry C Hazen, Dr Susannah Green Tringe

  222. Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

    Article • Science, October 2009, American Association for the Advancement of Science

    Dr Susannah Green Tringe

  223. Biocorrosive Thermophilic Microbial Communities in Alaskan North Slope Oil Facilities

    Article • Environmental Science & Technology, October 2009, American Chemical Society (ACS)

    Dr Susannah Green Tringe

  224. Susannah Tringe at the DOE JGI 2009 User Meeting

    Article • May 2009, SciVee, Inc

    Dr Susannah Green Tringe

  225. A renaissance for the pioneering 16S rRNA gene

    Article • Current Opinion in Microbiology, October 2008, Elsevier

    Dr Susannah Green Tringe

  226. High-resolution metagenomics targets specific functional types in complex microbial communities

    Article • Nature Biotechnology, August 2008, Springer Science + Business Media

    Dr Susannah Green Tringe

  227. The Airborne Metagenome in an Indoor Urban Environment

    Article • PLOS One, April 2008, PLOS

    Dr Susannah Green Tringe

  228. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

    Article • Nature, November 2007, Springer Science + Business Media

    Dr Susannah Green Tringe, Professor Giselle Tamayo-Castillo, Dr Nikos C Kyrpides

  229. Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

    Article • Science, February 2007, American Association for the Advancement of Science

    Dr Susannah Green Tringe

  230. The WTM Genes in Budding Yeast Amplify Expression of the Stress-Inducible Gene RNR3

    Article • Genetics, September 2006, Genetics Society of America

    Dr Susannah Green Tringe

  231. Metagenomics: DNA sequencing of environmental samples

    Article • Nature Reviews Genetics, October 2005, Springer Science + Business Media

    Dr Susannah Green Tringe

  232. Comparative Metagenomics of Microbial Communities

    Article • Science, April 2005, American Association for the Advancement of Science

    Dr Susannah Green Tringe

  233. Article • Genome Biology, January 2004, Springer Science + Business Media

    Dr Susannah Green Tringe

  234. p53 Checkpoint-Defective Cells Are Sensitive to X Rays, but Not Hypoxia

    Article • Experimental Cell Research, July 2000, Elsevier

    Dr Susannah Green Tringe

  235. PlanarXY-model dynamics in a nematic liquid crystal system

    Article • May 1994, American Physical Society (APS)

    Dr Susannah Green Tringe

  236. Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic

    Article • Research Square

    Dr Susannah Green Tringe