All Stories

  1. Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland

    Article • mBio, February 2017, ASM Journals

    Professor Julian Parkhill

  2. Evaluation of an Optimal Epidemiological Typing Scheme for Legionella pneumophila with Whole-Genome Sequence Data Using Validation Guidelines

    Article • Journal of Clinical Microbiology, June 2016, ASM Journals

    Professor Julian Parkhill

  3. Genomic perspectives on the evolution and spread of bacterial pathogens

    Article • Proceedings of the Royal Society B Biological Sciences, December 2015, Royal Society Publishing

    Professor Julian Parkhill

  4. Implications of multiple freeze-thawing on respiratory samples for culture-independent analyses

    Article • Journal of Cystic Fibrosis, July 2015, Elsevier

    Professor Julian Parkhill, Dr Lucas Hoffman

  5. Complete Genome Sequence of Bordetella pertussis D420

    Article • Genome Announcements, June 2015, ASM Journals

    Professor Julian Parkhill

  6. Emergent and evolving antimicrobial resistance cassettes in community-associated fusidic acid and meticillin-resistant Staphylococcus aureus

    Article • International Journal of Antimicrobial Agents, May 2015, Elsevier

    Professor Julian Parkhill

  7. Large-scale whole genome sequencing ofM. tuberculosisprovides insights into transmission in a high prevalence area

    Article • eLife, March 2015, eLife

    Professor Julian Parkhill

  8. Staphylococcus aureus Adapts to Oxidative Stress by Producing H2O2-Resistant Small-Colony Variants via the SOS Response

    Article • Infection and Immunity, February 2015, ASM Journals

    Professor Julian Parkhill

  9. Microbiota That Affect Risk for Shigellosis in Children in Low-Income Countries

    Article • Emerging Infectious Diseases, February 2015, Centers for Disease Control and Prevention (CDC)

    Professor Julian Parkhill

  10. Erratum: Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline

    Article • Nature Communications, January 2015, Springer Science + Business Media

    Professor Julian Parkhill

  11. Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection

    Article • January 2015, Cold Spring Harbor Laboratory Press

    Professor Julian Parkhill

  12. Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting

    Article • Genome Research, December 2014, Cold Spring Harbor Laboratory Press

    Professor Julian Parkhill

  13. Whole-Genome Sequencing Confirms that Burkholderia pseudomallei Multilocus Sequence Types Common to Both Cambodia and Australia Are Due to Homoplasy

    Article • Journal of Clinical Microbiology, November 2014, ASM Journals

    Professor Julian Parkhill, Dr Derek S Sarovich, Professor Peter A Vandamme

  14. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

    Article • BMC Biology, November 2014, Springer Science + Business Media

    Professor Julian Parkhill

  15. The extant World War 1 dysentery bacillus NCTC1: a genomic analysis

    Article • The Lancet, November 2014, Elsevier

    Professor Julian Parkhill

  16. Bacillary dysentery from World War 1 and NCTC1, the first bacterial isolate in the National Collection

    Article • The Lancet, November 2014, Elsevier

    Professor Julian Parkhill

  17. Recurrence due to Relapse or Reinfection WithMycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalence and Active Follow-up

    Article • The Journal of Infectious Diseases, October 2014, Oxford University Press (OUP)

    Professor Julian Parkhill

  18. Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

    Article • Genome Research, September 2014, Cold Spring Harbor Laboratory Press

    Professor Julian Parkhill, Dr David J Studholme

  19. Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model

    Article • PLoS Computational Biology, August 2014, PLOS

    Professor Julian Parkhill

  20. Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

    Article • Nature, August 2014, Springer Science + Business Media

    Professor Julian Parkhill

  21. Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

    Article • PLoS Genetics, August 2014, PLOS

    Professor Julian Parkhill

  22. Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

    Article • PLoS Biology, August 2014, PLOS

    Professor Julian Parkhill, Dr Timothy J Donohue, Prof. Jonathan A. Eisen, Prof George M Garrity, Prof. Dr. Dr. h.c. Michael Wagner, PhD, Microbiology Edward R.B. Moore, Antoine Danchin, Dr Nikos C Kyrpides

  23. Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline

    Article • Nature Communications, August 2014, Springer Science + Business Media

    Professor Julian Parkhill, Professor ANDROULLA EFSTRATIOU, Professor ALBERTO BERARDI

  24. Reagent contamination can critically impact sequence-based microbiome analyses

    Article • July 2014, Cold Spring Harbor Laboratory Press

    Professor Julian Parkhill

  25. An integrated catalog of reference genes in the human gut microbiome

    Article • Nature Biotechnology, July 2014, Springer Science + Business Media

    Professor Julian Parkhill, Jan Knol

  26. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

    Article • Nature Biotechnology, July 2014, Springer Science + Business Media

    Professor Julian Parkhill, Jan Knol

  27. PolyTB: A genomic variation map for Mycobacterium tuberculosis

    Article • Tuberculosis, May 2014, Elsevier

    Professor Julian Parkhill, Professor Miguel Viveiros

  28. Cryptic ecology among host generalistCampylobacter jejuniin domestic animals

    Article • Molecular Ecology, April 2014, Wiley

    Professor Julian Parkhill

  29. Global Population Structure and Evolution of Bordetella pertussis and Their Relationship with Vaccination

    Article • mBio, April 2014, ASM Journals

    Professor Julian Parkhill

  30. Comment on: Characterization of the embB gene in Mycobacterium tuberculosis isolates from Barcelona and rapid detection of main mutations related to ethambutol resistance using a low-density DNA array

    Article • Journal of Antimicrobial Chemotherapy, April 2014, Oxford University Press (OUP)

    Professor Julian Parkhill

  31. Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

    Article • The Lancet Infectious Diseases, March 2014, Elsevier

    Professor Julian Parkhill

  32. The Impact of Different DNA Extraction Kits and Laboratories upon the Assessment of Human Gut Microbiota Composition by 16S rRNA Gene Sequencing

    Article • PLoS ONE, February 2014, PLOS

    Professor Julian Parkhill

  33. Dense genomic sampling identifies highways of pneumococcal recombination

    Article • Nature Genetics, February 2014, Springer Science + Business Media

    Professor Julian Parkhill

  34. Evolution and transmission of drug-resistant tuberculosis in a Russian population

    Article • Nature Genetics, January 2014, Springer Science + Business Media

    Professor Julian Parkhill

  35. Comparative genome analysis of Wolbachia strain wAu

    Article • BMC Genomics, January 2014, Springer Science + Business Media

    Professor Julian Parkhill

  36. Genomic Epidemiology of Vibrio cholerae O1 Associated with Floods, Pakistan, 2010

    Article • Emerging Infectious Diseases, January 2014, Centers for Disease Control and Prevention (CDC)

    Professor Julian Parkhill

  37. Variable recombination dynamics during the emergence, transmission and ‘disarming’ of a multidrug-resistant pneumococcal clone

    Article • BMC Biology, January 2014, Springer Science + Business Media

    Professor Julian Parkhill

  38. Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition

    Article • Genome Biology, January 2014, Springer Science + Business Media

    Professor Julian Parkhill, Dr Ruhul Amin

  39. The hospital microbiome project: meeting report for the UK science and innovation network UK-USA workshop ‘beating the superbugs: hospital microbiome studies for tackling antimicrobial resistance’, October 14th 2013

    Article • Standards in Genomic Sciences, January 2014, Springer Science + Business Media

    Professor Julian Parkhill

  40. Correction: Expression of Cellulosome Components and Type IV Pili within the Extracellular Proteome of Ruminococcus flavefaciens 007

    Article • PLoS ONE, December 2013, PLOS

    Professor Julian Parkhill

  41. Elucidating Emergence and Transmission of Multidrug-Resistant Tuberculosis in Treatment Experienced Patients by Whole Genome Sequencing

    Article • PLoS ONE, December 2013, PLOS

    Professor Julian Parkhill

  42. Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study

    Article • The Lancet Respiratory Medicine, December 2013, Elsevier

    Professor Julian Parkhill

  43. Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA

    Article • Nature Protocols, November 2013, Springer Science + Business Media

    Professor Julian Parkhill

  44. Transcriptional Regulation of Culex pipiens Mosquitoes by Wolbachia Influences Cytoplasmic Incompatibility

    Article • PLoS Pathogens, October 2013, PLOS

    Professor Julian Parkhill

  45. Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection

    Article • PLoS Genetics, October 2013, PLOS

    Professor Julian Parkhill

  46. Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota

    Article • PLoS ONE, October 2013, PLOS

    Professor Julian Parkhill

  47. The Distribution and ‘In Vivo’ Phase Variation Status of Haemoglobin Receptors in Invasive Meningococcal Serogroup B Disease: Genotypic and Phenotypic Analysis

    Article • PLoS ONE, September 2013, PLOS

    Professor Julian Parkhill

  48. A Study on the Geophylogeny of Clinical and Environmental Vibrio cholerae in Kenya

    Article • PLoS ONE, September 2013, PLOS

    Professor Julian Parkhill

  49. Fighting Obesity with Bacteria

    Article • Science, September 2013, American Association for the Advancement of Science

    Professor Julian Parkhill

  50. Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

    Article • Nature Genetics, September 2013, Springer Science + Business Media

    Professor Julian Parkhill

  51. What has high-throughput sequencing ever done for us?

    Article • Nature Reviews Microbiology, August 2013, Springer Science + Business Media

    Professor Julian Parkhill

  52. Rapid Bacterial Whole-Genome Sequencing to Enhance Diagnostic and Public Health Microbiology

    Article • JAMA Internal Medicine, August 2013, American Medical Association (AMA)

    Professor Julian Parkhill

  53. Transmission of M abscessus in patients with cystic fibrosis – Authors' reply

    Article • The Lancet, August 2013, Elsevier

    Professor Julian Parkhill

  54. Richness of human gut microbiome correlates with metabolic markers

    Article • Nature, August 2013, Springer Science + Business Media

    Professor Julian Parkhill, Jan Knol

  55. Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis

    Article • The New England Journal of Medicine and Surgery and the Collateral Branches of Science, July 2013, New England Journal of Medicine (NEJM/MMS)

    Professor Julian Parkhill

  56. Incidence and Characterisation of Methicillin-Resistant Staphylococcus aureus (MRSA) from Nasal Colonisation in Participants Attending a Cattle Veterinary Conference in the UK

    Article • PLoS ONE, July 2013, PLOS

    Professor Julian Parkhill, Dr Gavin K Paterson

  57. Read and assembly metrics inconsequential for clinical utility of whole-genome sequencing in mapping outbreaks

    Article • Nature Biotechnology, July 2013, Springer Science + Business Media

    Professor Julian Parkhill

  58. Consequences ofwhiB7(Rv3197A) Mutations in Beijing Genotype Isolates of the Mycobacterium tuberculosis Complex

    Article • Antimicrobial Agents and Chemotherapy, June 2013, ASM Journals

    Professor Julian Parkhill

  59. Expression of Cellulosome Components and Type IV Pili within the Extracellular Proteome of Ruminococcus flavefaciens 007

    Article • PLoS ONE, June 2013, PLOS

    Professor Julian Parkhill

  60. Unusual features in organisation of capsular polysaccharide-related genes of C. jejuni strain X

    Article • Gene, June 2013, Elsevier

    Andrey Karlyshev, Professor Julian Parkhill

  61. Novel Mycobacterium tuberculosis Complex Isolate from a Wild Chimpanzee

    Article • Emerging Infectious Diseases, June 2013, Centers for Disease Control and Prevention (CDC)

    Professor Julian Parkhill

  62. Population genomics of post-vaccine changes in pneumococcal epidemiology

    Article • Nature Genetics, May 2013, Springer Science + Business Media

    Professor Julian Parkhill

  63. Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study

    Article • The Lancet, May 2013, Elsevier

    Professor Julian Parkhill

  64. Comprehensive Assignment of Roles for Salmonella Typhimurium Genes in Intestinal Colonization of Food-Producing Animals

    Article • PLoS Genetics, April 2013, PLOS

    Professor Julian Parkhill

  65. Description and Nomenclature of Neisseria meningitidis Capsule Locus

    Article • Emerging Infectious Diseases, April 2013, Centers for Disease Control and Prevention (CDC)

    Professor Julian Parkhill

  66. Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel mecA homologue mecC

    Article • EMBO Molecular Medicine, March 2013, EMBO

    Professor Julian Parkhill, Dr Gavin K Paterson

  67. Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data

    Article • BMC Infectious Diseases, February 2013, Springer Science + Business Media

    Professor Julian Parkhill

  68. Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions

    Article • Nature Genetics, February 2013, Springer Science + Business Media

    Professor Julian Parkhill

  69. Transcription factor T-bet regulates intestinal inflammation mediated by innate lymphoid cells with the interleukin-7 receptor

    Article • The Lancet, February 2013, Elsevier

    Professor Julian Parkhill

  70. Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study

    Article • The Lancet Infectious Diseases, February 2013, Elsevier

    Professor Julian Parkhill

  71. Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

    Article • The Lancet Infectious Diseases, February 2013, Elsevier

    Professor Julian Parkhill

  72. Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

    Article • Nature Genetics, January 2013, Springer Science + Business Media

    Dr Sylvain Brisse, Professor Julian Parkhill, Dr Fadel SAYES, Wafa FRIGUI

  73. Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    Professor Julian Parkhill

  74. Progressive genome‐wide introgression in agriculturalCampylobacter coli

    Article • Molecular Ecology, December 2012, Wiley

    Professor Julian Parkhill, Dr Ben Pascoe

  75. Emergence and global spread of epidemic healthcare-associated Clostridium difficile

    Article • Nature Genetics, December 2012, Springer Science + Business Media

    Professor Julian Parkhill, Professor MARK H WILCOX, Derek J Brown

  76. Rapid Whole-Genome Sequencing for Investigation of a Suspected Tuberculosis Outbreak

    Article • Journal of Clinical Microbiology, November 2012, ASM Journals

    Professor Julian Parkhill

  77. A whole-genome sequencing approach to targeting Mycobacterium tuberculosis outbreak management

    Article • The Lancet, November 2012, Elsevier

    Professor Julian Parkhill

  78. Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice

    Article • PLoS Pathogens, October 2012, PLOS

    Professor Julian Parkhill

  79. The Transcription Factor T-bet Regulates Intestinal Inflammation Mediated by Interleukin-7 Receptor+ Innate Lymphoid Cells

    Article • Immunity, October 2012, Elsevier

    Professor Julian Parkhill, Dr Ahmed A H Hashim

  80. Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa

    Article • Nature Genetics, September 2012, Springer Science + Business Media

    Sharon Tennant, Professor Julian Parkhill

  81. SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

    Article • Bioinformatics, September 2012, Oxford University Press (OUP)

    Professor Julian Parkhill

  82. Genetic Characterisation of Malawian Pneumococci Prior to the Roll-Out of the PCV13 Vaccine Using a High-Throughput Whole Genome Sequencing Approach

    Article • PLoS ONE, September 2012, PLOS

    Professor Julian Parkhill

  83. A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus

    Article • The ISME Journal, September 2012, Springer Science + Business Media

    Professor Julian Parkhill

  84. Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

    Article • Nature Genetics, August 2012, Springer Science + Business Media

    Professor Julian Parkhill, Derek J Brown

  85. Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology

    Article • PLoS Pathogens, August 2012, PLOS

    Professor Julian Parkhill

  86. Fibrinogen‐binding and platelet‐aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen‐binding protein

    Article • Molecular Microbiology, July 2012, Wiley

    Professor Julian Parkhill

  87. A High-Resolution View of Genome-Wide Pneumococcal Transformation

    Article • PLoS Pathogens, June 2012, PLOS

    Professor Julian Parkhill, Dr Lars E Barquist

  88. Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

    Article • The New England Journal of Medicine and Surgery and the Collateral Branches of Science, June 2012, New England Journal of Medicine (NEJM/MMS)

    Professor Julian Parkhill, Dr Li Yang Hsu

  89. Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

    Article • Nature Genetics, March 2012, Springer Science + Business Media

    Professor Julian Parkhill, Dr Martin Holland

  90. Lineage-specific Virulence Determinants of Haemophilus influenzae Biogroup aegyptius

    Article • Emerging Infectious Diseases, March 2012, Centers for Disease Control and Prevention (CDC)

    Professor Julian Parkhill

  91. The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex

    Article • PLoS Neglected Tropical Diseases, February 2012, PLOS

    Professor Julian Parkhill

  92. Microevolution of extensively drug-resistant tuberculosis in Russia

    Article • Genome Research, January 2012, Cold Spring Harbor Laboratory Press

    Professor Julian Parkhill

  93. BamView: visualizing and interpretation of next-generation sequencing read alignments

    Article • Briefings in Bioinformatics, January 2012, Oxford University Press (OUP)

    Professor Julian Parkhill

  94. Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

    Article • Genome Biology, January 2012, Springer Science + Business Media

    Professor Henrik Westh, Professor Julian Parkhill, Dr Santiago Castillo

  95. Phenotypic and Genomic Analysis of Hypervirulent Human-associated Bordetella bronchiseptica

    Article • BMC Microbiology, January 2012, Springer Science + Business Media

    Professor Julian Parkhill

  96. Investigations into genome diversity of Haemophilus influenzae using whole genome sequencing of clinical isolates and laboratory transformants

    Article • BMC Microbiology, January 2012, Springer Science + Business Media

    Professor Julian Parkhill

  97. The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success

    Article • Genome Biology, January 2012, Springer Science + Business Media

    Professor Julian Parkhill

  98. Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Professor Julian Parkhill

  99. Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Professor Julian Parkhill, Dr Alistair C Darby, Dr Alistair C Darby, Emeritus Professor David John Hampson

  100. Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

    Article • Bioinformatics, December 2011, Oxford University Press (OUP)

    Professor Julian Parkhill

  101. Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis

    Article • PLoS Pathogens, November 2011, PLOS

    Kristine Arnvig, Professor Julian Parkhill

  102. Ileal Pouch Microbial Diversity

    Article • Annals of Surgery, October 2011, Wolters Kluwer Health

    Professor Julian Parkhill

  103. Evidence for several waves of global transmission in the seventh cholera pandemic

    Article • Nature, August 2011, Springer Science + Business Media

    Professor Julian Parkhill, Professor Dong Wook Kim, Professor Cecil Czerkinsky, James Wood

  104. Salmonella bongori Provides Insights into the Evolution of the Salmonellae

    Article • PLoS Pathogens, August 2011, PLOS

    Professor Julian Parkhill, Professor Andreas J Baumler, Dr Carlos J Blondel

  105. Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study

    Article • The Lancet Infectious Diseases, August 2011, Elsevier

    Professor Julian Parkhill

  106. Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid

    Article • PLoS Neglected Tropical Diseases, July 2011, PLOS

    Professor Julian Parkhill, Professor Séamus Fanning

  107. The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones

    Article • PLoS Pathogens, July 2011, PLOS

    Professor Julian Parkhill, Dr Santiago Castillo

  108. Genome sequence of Staphylococcus lugdunensis N920143 allows identification of putative colonization and virulence factors

    Article • FEMS Microbiology Letters, July 2011, Oxford University Press (OUP)

    Joan A Geoghegan, Professor Julian Parkhill

  109. Enterotypes of the human gut microbiome

    Article • Nature, April 2011, Springer Science + Business Media

    Professor Julian Parkhill, Jan Knol

  110. GSC 11: Julian Parkhill

    Article • April 2011, SciVee, Inc

    Professor Julian Parkhill

  111. Citrobacter rodentium is an Unstable Pathogen Showing Evidence of Significant Genomic Flux

    Article • PLoS Pathogens, April 2011, PLOS

    Professor Julian Parkhill

  112. Identification, variation and transcription of pneumococcal repeat sequences

    Article • BMC Genomics, February 2011, Springer Science + Business Media

    Professor Julian Parkhill

  113. Bacterial epidemiology and biology - lessons from genome sequencing

    Article • Genome Biology, January 2011, Springer Science + Business Media

    Professor Julian Parkhill

  114. High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

    Article • BMC Microbiology, January 2011, Springer Science + Business Media

    Professor Julian Parkhill

  115. Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

    Article • The ISME Journal, December 2010, Oxford University Press (OUP)

    Professor Julian Parkhill

  116. Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

    Article • BMC Genomics, November 2010, Springer Science + Business Media

    Professor Julian Parkhill

  117. Comparative genomics of prevaccination and modern Bordetella pertussis strains

    Article • BMC Genomics, November 2010, Springer Science + Business Media

    Professor Frits R Mooi, Professor Julian Parkhill

  118. The Genome of a Pathogenic Rhodococcus: Cooptive Virulence Underpinned by Key Gene Acquisitions

    Article • PLoS Genetics, September 2010, PLOS

    Professor Julian Parkhill

  119. Dominant and diet-responsive groups of bacteria within the human colonic microbiota

    Article • The ISME Journal, August 2010, Springer Science + Business Media

    Professor Julian Parkhill

  120. Emergence of the Asian 1 Genotype of Dengue Virus Serotype 2 in Viet Nam: In Vivo Fitness Advantage and Lineage Replacement in South-East Asia

    Article • PLoS Neglected Tropical Diseases, July 2010, PLOS

    Dr Philippe BUCHY, Professor Julian Parkhill

  121. In-depth genetic analysis ofClostridiumdifficilePCR-ribotype 027 strains reveals high genome fluidity including point mutations and inversions

    Article • Gut Microbes, July 2010, Taylor & Francis

    Professor Julian Parkhill

  122. The Bacteriology of Pouchitis

    Article • Annals of Surgery, July 2010, Wolters Kluwer Health

    Professor Julian Parkhill

  123. High-throughput bacterial SNP typing identifies distinct clusters of SalmonellaTyphi causing typhoid in Nepalese children

    Article • BMC Infectious Diseases, May 2010, Springer Science + Business Media

    Professor Julian Parkhill

  124. A human gut microbial gene catalogue established by metagenomic sequencing

    Article • Nature, March 2010, Springer Science + Business Media

    Professor Julian Parkhill, Jan Knol

  125. Complete Genome Sequence and Comparative Metabolic Profiling of the Prototypical Enteroaggregative Escherichia coli Strain 042

    Article • PLoS ONE, January 2010, PLOS

    Dr David A Rasko, Professor Julian Parkhill

  126. BamView: viewing mapped read alignment data in the context of the reference sequence

    Article • Bioinformatics, January 2010, Oxford University Press (OUP)

    Professor Julian Parkhill

  127. Genomic information infrastructure after the deluge

    Article • Genome Biology, January 2010, Springer Science + Business Media

    Professor Julian Parkhill

  128. Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen

    Article • BMC Genomics, January 2010, Springer Science + Business Media

    Professor Julian Parkhill

  129. Distribution of Tetracycline and Erythromycin Resistance Genes Among Human Oral and Fecal Metagenomic DNA

    Article • Microbial Drug Resistance, September 2009, Mary Ann Liebert Inc

    Professor Julian Parkhill

  130. A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

    Article • PLoS Genetics, July 2009, PLOS

    Professor Julian Parkhill

  131. Rapid Evolution of Virulence and Drug Resistance in the Emerging Zoonotic Pathogen Streptococcus suis

    Article • PLoS ONE, July 2009, PLOS

    Professor Julian Parkhill

  132. The genome of the blood fluke Schistosoma mansoni

    Article • Nature, July 2009, Springer Science + Business Media

    Professor Julian Parkhill, Professor Elodie Ghedin

  133. Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA

    Article • Bioinformatics, June 2009, Oxford University Press (OUP)

    Professor Julian Parkhill

  134. Genome flexibility in Neisseria meningitidis

    Article • Vaccine, June 2009, Elsevier

    Professor Julian Parkhill

  135. Genomic Evidence for the Evolution of Streptococcus equi: Host Restriction, Increased Virulence, and Genetic Exchange with Human Pathogens

    Article • PLoS Pathogens, March 2009, PLOS

    Professor Julian Parkhill

  136. Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Professor Julian Parkhill

  137. Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Professor Julian Parkhill

  138. Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium

    Article • Genome Biology, January 2009, Springer Science + Business Media

    Professor Julian Parkhill

  139. Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Professor Julian Parkhill

  140. Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Professor Julian Parkhill

  141. Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Professor Julian Parkhill, Dr Martin Holland

  142. Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

    Article • Genome Biology, January 2009, Springer Science + Business Media

    Professor Julian Parkhill, Dr Andrew J Spiers, Dr Xue-Xian Zhang

  143. A novel streptococcal integrative conjugative element involved in iron acquisition

    Article • Molecular Microbiology, December 2008, Wiley

    Professor Julian Parkhill

  144. DNAPlotter: circular and linear interactive genome visualization

    Article • Bioinformatics, November 2008, Oxford University Press (OUP)

    Professor Julian Parkhill

  145. Time to remove the model organism blinkers

    Article • Trends in Microbiology, November 2008, Elsevier

    Professor Julian Parkhill

  146. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

    Article • Bioinformatics, October 2008, Oxford University Press (OUP)

    Professor Julian Parkhill

  147. Population genomics: modeling the new and a renaissance of the old

    Article • Current Opinion in Microbiology, October 2008, Elsevier

    Professor Julian Parkhill

  148. Correction: A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria

    Article • PLoS ONE, August 2008, PLOS

    Professor Julian Parkhill

  149. Correction: A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria

    Article • PLoS ONE, August 2008, PLOS

    Professor Julian Parkhill

  150. High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

    Article • Nature Genetics, July 2008, Springer Science + Business Media

    Professor Julian Parkhill

  151. A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria

    Article • PLoS ONE, July 2008, PLOS

    Professor Julian Parkhill, Dr Santiago Castillo

  152. Replacement of Adenylate Cyclase Toxin in a Lineage of Bordetella bronchiseptica

    Article • Journal of Bacteriology, June 2008, ASM Journals

    Professor Julian Parkhill

  153. Microbiology in the post-genomic era

    Article • Nature Reviews Microbiology, May 2008, Springer Science + Business Media

    Professor Julian Parkhill

  154. Pathogenomics: An updated European Research Agenda

    Article • Infection Genetics and Evolution, May 2008, Elsevier

    Professor Julian Parkhill, Professor Seyed Ehtesham Hasnain, Professor Ulrich Dobrindt

  155. The minimum information about a genome sequence (MIGS) specification

    Article • Nature Biotechnology, May 2008, Springer Science + Business Media

    Professor Julian Parkhill, Dr Andrew J Spiers, Prof George M Garrity, Dr Robert A Edwards, Dr Nikos C Kyrpides

  156. Single-cell genomics

    Article • Nature Reviews Microbiology, March 2008, Springer Science + Business Media

    Professor Julian Parkhill

  157. Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis

    Article • Genome Research, February 2008, Cold Spring Harbor Laboratory Press

    Professor Julian Parkhill

  158. Resolving the structural features of genomic islands: A machine learning approach

    Article • Genome Research, February 2008, Cold Spring Harbor Laboratory Press

    Professor Julian Parkhill

  159. Faculty Opinions recommendation of Genome-wide experimental determination of barriers to horizontal gene transfer.

    Article • January 2008, F1000Research

    Professor Julian Parkhill

  160. The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay

    Article • BMC Genomics, January 2008, Springer Science + Business Media

    Professor Julian Parkhill

  161. The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

    Article • Genome Biology, January 2008, Springer Science + Business Media

    Professor Julian Parkhill

  162. Whole-genome analysis of pathogen evolution

    Article • November 2007, Oxford University Press (OUP)

    Professor Julian Parkhill

  163. Faculty Opinions recommendation of Temporal fragmentation of speciation in bacteria.

    Article • August 2007, F1000Research

    Professor Julian Parkhill

  164. Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota

    Article • PLoS Biology, August 2007, PLOS

    Professor Julian Parkhill

  165. Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet

    Article • The ISME Journal, July 2007, Springer Science + Business Media

    Professor Julian Parkhill, Dr Andrew J Spiers, Lori Snyder, Dr Xue-Xian Zhang

  166. Faculty Opinions recommendation of CRISPR provides acquired resistance against viruses in prokaryotes.

    Article • March 2007, F1000Research

    Professor Julian Parkhill

  167. Faculty Opinions recommendation of Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing.

    Article • February 2007, F1000Research

    Professor Julian Parkhill

  168. Genetic flux over time in the Salmonella lineage

    Article • Genome Biology, January 2007, Springer Science + Business Media

    Professor Julian Parkhill

  169. A Novel Linear Plasmid Mediates Flagellar Variation in Salmonella Typhi

    Article • PLoS Pathogens, January 2007, PLOS

    Professor Julian Parkhill

  170. Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence

    Article • BMC Genomics, January 2007, Springer Science + Business Media

    Professor Julian Parkhill

  171. Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group

    Article • BMC Biology, January 2007, Springer Science + Business Media

    Professor Julian Parkhill

  172. Meningococcal Genetic Variation Mechanisms Viewed through Comparative Analysis of Serogroup C Strain FAM18

    Article • PLoS Genetics, January 2007, PLOS

    Professor Julian Parkhill, Lori Snyder

  173. A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?

    Article • Genome Research, December 2006, Cold Spring Harbor Laboratory Press

    Professor Julian Parkhill

  174. Proteomic and microarray characterization of the AggR regulon identifies a pheU pathogenicity island in enteroaggregative Escherichia coli

    Article • Molecular Microbiology, September 2006, Wiley

    Professor Julian Parkhill

  175. Faculty Opinions recommendation of A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action.

    Article • July 2006, F1000Research

    Professor Julian Parkhill

  176. Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands

    Article • Bioinformatics, July 2006, Oxford University Press (OUP)

    Professor Julian Parkhill

  177. The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

    Article • Nature Genetics, June 2006, Springer Science + Business Media

    Professor Julian Parkhill

  178. Phylogenetic Relationships of the Wolbachia of Nematodes and Arthropods

    Article • PLoS Pathogens, January 2006, PLOS

    Professor Julian Parkhill

  179. Genetic Analysis of the Capsular Biosynthetic Locus from All 90 Pneumococcal Serotypes

    Article • PLoS Genetics, January 2006, PLOS

    Professor Julian Parkhill, Professor Peter Richard Reeves

  180. The Complete Genome Sequence and Comparative Genome Analysis of the High Pathogenicity Yersinia enterocolitica Strain 8081

    Article • PLoS Genetics, January 2006, PLOS

    Professor Julian Parkhill

  181. Faculty Opinions recommendation of Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis.

    Article • October 2005, F1000Research

    Professor Julian Parkhill

  182. The pCoo Plasmid of Enterotoxigenic Escherichia coli Is a Mosaic Cointegrate

    Article • Journal of Bacteriology, September 2005, ASM Journals

    Professor Julian Parkhill

  183. Bacterial pathogens of man

    Article • July 2005, Wiley

    Professor Julian Parkhill

  184. Wolbachia variability and host effects on crossing type in Culex mosquitoes

    Article • July 2005, Nature

    Professor Julian Parkhill

  185. Identification of DNA Markers for a TransmissiblePseudomonas aeruginosaCystic Fibrosis Strain

    Article • American Journal of Respiratory Cell and Molecular Biology, July 2005, American Thoracic Society

    Professor Julian Parkhill

  186. ACT: the Artemis comparison tool

    Article • Bioinformatics, June 2005, Oxford University Press (OUP)

    Professor Julian Parkhill

  187. Comparative Apicomplexan genomics

    Article • Nature Reviews Microbiology, May 2005, Springer Science + Business Media

    Professor Julian Parkhill

  188. Integration of tools and resources for display and analysis of genomic data for protozoan parasites

    Article • International Journal for Parasitology, April 2005, Elsevier

    Professor Julian Parkhill

  189. Faculty Opinions recommendation of Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.

    Article • March 2005, F1000Research

    Professor Julian Parkhill

  190. Livelihood hazards

    Article • Nature Reviews Microbiology, March 2005, Springer Science + Business Media

    Professor Julian Parkhill

  191. Diversity at every level

    Article • Nature Reviews Microbiology, February 2005, Springer Science + Business Media

    Professor Julian Parkhill

  192. Faculty Opinions recommendation of Psi-Phi: exploring the outer limits of bacterial pseudogenes.

    Article • January 2005, F1000Research

    Professor Julian Parkhill

  193. Brothers in arms

    Article • Nature Reviews Microbiology, January 2005, Springer Science + Business Media

    Professor Julian Parkhill

  194. Enemies within

    Article • Nature Reviews Microbiology, January 2005, Springer Science + Business Media

    Professor Julian Parkhill

  195. Comparative genomic view of mechanisms of variation in Neisseria meningitidis through sequencing and analysis of a third meningococcal genome from serogroup C strain FAM18

    Article • PLoS Genetics, January 2005, PLOS

    Professor Julian Parkhill

  196. Comparative Genomic Structure of Prokaryotes

    Article • Annual Review of Genetics, December 2004, Annual Reviews

    Professor Julian Parkhill

  197. Genomic pot pourri

    Article • Nature Reviews Microbiology, December 2004, Springer Science + Business Media

    Professor Julian Parkhill

  198. Eukaryotes: not beyond compare

    Article • Nature Reviews Microbiology, November 2004, Springer Science + Business Media

    Professor Julian Parkhill

  199. The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics

    Article • Plasmid, November 2004, Elsevier

    Professor Julian Parkhill

  200. Analysis of Campylobacter jejuni capsular loci reveals multiple mechanisms for the generation of structural diversity and the ability to form complex heptoses

    Article • Molecular Microbiology, October 2004, Wiley

    Andrey Karlyshev, Professor Warren Wakarchuk, Professor Julian Parkhill

  201. Pathogens in decay

    Article • Nature Reviews Microbiology, October 2004, Springer Science + Business Media

    Professor Julian Parkhill

  202. The use of genome annotation data and its impact on biological conclusions

    Article • Nature Genetics, October 2004, Springer Science + Business Media

    Professor Julian Parkhill

  203. Genomes beyond compare

    Article • Nature Reviews Microbiology, August 2004, Springer Science + Business Media

    Professor Julian Parkhill

  204. Tyrosine site-specific recombinases mediate DNA inversions affecting the expression of outer surface proteins of Bacteroides fragilis

    Article • Molecular Microbiology, July 2004, Wiley

    Professor Julian Parkhill

  205. New environments, versatile genomes

    Article • Nature Reviews Microbiology, June 2004, Springer Science + Business Media

    Professor Julian Parkhill

  206. The Role of Prophage-like Elements in the Diversity of Salmonella enterica Serovars

    Article • Journal of Molecular Biology, May 2004, Elsevier

    Professor Julian Parkhill

  207. The Bordetellae: lessons from genomics

    Article • Nature Reviews Microbiology, May 2004, Springer Science + Business Media

    Professor Julian Parkhill

  208. Strength in diversity

    Article • Nature Reviews Microbiology, May 2004, Springer Science + Business Media

    Professor Julian Parkhill

  209. Comparative cell wall core biosynthesis in the mycolated pathogens, Mycobacterium tuberculosis and Corynebacterium diphtheriae

    Article • FEMS Microbiology Reviews, May 2004, Oxford University Press (OUP)

    Professor Julian Parkhill

  210. Faculty Opinions recommendation of Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.

    Article • April 2004, F1000Research

    Professor Julian Parkhill

  211. Bacterial minimalism

    Article • Nature Reviews Microbiology, April 2004, Springer Science + Business Media

    Professor Julian Parkhill

  212. Faculty Opinions recommendation of Community structure and metabolism through reconstruction of microbial genomes from the environment.

    Article • March 2004, F1000Research

    Professor Julian Parkhill

  213. Sequencing the environment

    Article • Nature Reviews Microbiology, March 2004, Springer Science + Business Media

    Professor Julian Parkhill

  214. Pathogenomics of non-pathogens

    Article • Nature Reviews Microbiology, February 2004, Springer Science + Business Media

    Professor Julian Parkhill

  215. Cobalamin Synthesis in Yersinia enterocolitica 8081

    Article • January 2004, Springer Science + Business Media

    Dr Jon Cuccui, Professor Julian Parkhill

  216. Shrinking genomics

    Article • Nature Reviews Microbiology, January 2004, Springer Science + Business Media

    Professor Julian Parkhill

  217. Pathogenomics

    Article • Nature Reviews Microbiology, December 2003, Springer Science + Business Media

    Professor Julian Parkhill

  218. Fitting the niche by genomic adaptation

    Article • Nature Reviews Microbiology, November 2003, Springer Science + Business Media

    Professor Julian Parkhill

  219. The value of comparison

    Article • Nature Reviews Microbiology, October 2003, Springer Science + Business Media

    Professor Julian Parkhill

  220. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

    Article • Nature Genetics, August 2003, Springer Science + Business Media

    Professor Julian Parkhill

  221. A bad combination

    Article • Trends in Microbiology, July 2003, Elsevier

    Professor Julian Parkhill

  222. The devil is in the detail

    Article • Trends in Microbiology, June 2003, Elsevier

    Professor Julian Parkhill

  223. Relative pathogenic values

    Article • Nature, May 2003, Springer Science + Business Media

    Professor Julian Parkhill

  224. The good, the bad and the ugly?

    Article • Trends in Microbiology, May 2003, Elsevier

    Professor Julian Parkhill

  225. All walks of life

    Article • Trends in Microbiology, April 2003, Elsevier

    Professor Julian Parkhill

  226. A matter of fitness

    Article • Trends in Microbiology, March 2003, Elsevier

    Professor Julian Parkhill

  227. Faculty Opinions recommendation of Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica.

    Article • February 2003, F1000Research

    Professor Julian Parkhill

  228. The building blocks of pathogenicity

    Article • Trends in Microbiology, February 2003, Elsevier

    Professor Julian Parkhill

  229. Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei

    Article • The Lancet, February 2003, Elsevier

    Professor Julian Parkhill

  230. The magnificent seven

    Article • Trends in Microbiology, January 2003, Elsevier

    Professor Julian Parkhill

  231. Spot the difference…

    Article • Trends in Microbiology, November 2002, Elsevier

    Professor Julian Parkhill

  232. Genome Analysis of an Inducible Prophage and Prophage Remnants Integrated in the Streptococcus pyogenes Strain SF370

    Article • Virology, October 2002, Elsevier

    Professor Julian Parkhill

  233. Sibling rivalry

    Article • Trends in Microbiology, September 2002, Elsevier

    Professor Julian Parkhill

  234. Genome giants

    Article • Trends in Microbiology, July 2002, Elsevier

    Professor Julian Parkhill

  235. Tales of the unexpected

    Article • Trends in Microbiology, June 2002, Elsevier

    Professor Julian Parkhill

  236. Restricting genome data won't stop bioterrorism

    Article • Nature, May 2002, Springer Science + Business Media

    Professor Julian Parkhill

  237. The importance of complete genome sequences

    Article • Trends in Microbiology, May 2002, Elsevier

    Professor Julian Parkhill, Dr Robert A Edwards

  238. Characterisation and distribution of a cryptic Salmonella typhi plasmid pHCM2

    Article • Plasmid, May 2002, Elsevier

    Professor Julian Parkhill

  239. Armed to the teeth

    Article • Trends in Microbiology, April 2002, Elsevier

    Professor Julian Parkhill

  240. Split personalities

    Article • Trends in Microbiology, March 2002, Elsevier

    Professor Julian Parkhill

  241. Unlocking the genome of the human typhoid bacillus

    Article • The Lancet Infectious Diseases, March 2002, Elsevier

    Professor Julian Parkhill

  242. Annotation of microbial genomes

    Article • January 2002, Elsevier

    Professor Julian Parkhill

  243. Faculty Opinions recommendation of Does blood of healthy subjects contain bacterial ribosomal DNA?

    Article • December 2001, F1000Research

    Professor Julian Parkhill

  244. Dynamic duos

    Article • Trends in Microbiology, December 2001, Elsevier

    Professor Julian Parkhill

  245. Lost and found

    Article • Trends in Microbiology, November 2001, Elsevier

    Professor Julian Parkhill

  246. Faculty Opinions recommendation of A proteomic view on genome-based signal peptide predictions.

    Article • October 2001, F1000Research

    Professor Julian Parkhill

  247. Back in the limelight

    Article • Trends in Microbiology, October 2001, Elsevier

    Professor Julian Parkhill

  248. The Full Monty

    Article • Trends in Microbiology, September 2001, Elsevier

    Professor Julian Parkhill

  249. Size matters?

    Article • Trends in Microbiology, August 2001, Elsevier

    Professor Julian Parkhill

  250. Of staphs, streps and other things

    Article • Trends in Microbiology, July 2001, Elsevier

    Professor Julian Parkhill

  251. The failure of different strains of Yersinia pestis to produce lipopolysaccharide O-antigen under different growth conditions is due to mutations in the O-antigen gene cluster

    Article • FEMS Microbiology Letters, April 2001, Oxford University Press (OUP)

    Professor Julian Parkhill

  252. Genomics of Mycobacterium bovis

    Article • Tuberculosis, February 2001, Elsevier

    Professor Julian Parkhill

  253. Artemis: sequence visualization and annotation

    Article • Bioinformatics, October 2000, Oxford University Press (OUP)

    Professor Julian Parkhill

  254. 'Going wrong with confidence': misleading sequence analyses of CiaB and ClpX

    Article • Molecular Microbiology, October 1999, Wiley

    Professor Julian Parkhill

  255. New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv

    Article • Microbiology, April 1999, Society for General Microbiology

    Professor Julian Parkhill

  256. Definition of a major p53 binding site on Ad2E1B58K protein and a possible nuclear localization signal on the Ad12E1B54K protein

    Article • Oncogene, January 1999, Springer Science + Business Media

    Professor Julian Parkhill

  257. Selection and characterization of mercury- independent activation mutants of the Tn501 transcriptional regulator, MerR

    Article • Microbiology, October 1998, Society for General Microbiology

    Professor Julian Parkhill

  258. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

    Article • Nature, June 1998, Springer Science + Business Media

    Professor Julian Parkhill

  259. Homology between a human apoptosis specific protein and the product of APG5 , a gene involved in autophagy in yeast

    Article • FEBS Letters, April 1998, Wiley

    Professor Julian Parkhill

  260. Accelerated telomere shortening in ataxia telangiectasia

    Article • Nature Genetics, July 1996, Springer Science + Business Media

    Professor Julian Parkhill

  261. Induction of bacterial mercury- and copper-responsive promoters: Functional differences between inducible systems and implications for their use in gene-fusions for in vivo metal biosensors

    Article • March 1995, Springer Science + Business Media

    Professor Julian Parkhill

  262. Induction of the mer operon of Tn501 by the MerR repressor/activator.

    Article • Journal of Inorganic Biochemistry, August 1991, Elsevier

    Professor Julian Parkhill

  263. Metal homeostasis in Escherichia coli: The regulation of bacterial gene expression by cupric and mercuric ions.

    Article • Journal of Inorganic Biochemistry, August 1991, Elsevier

    Professor Julian Parkhill

  264. Bacterial resistances to mercury and copper

    Article • Journal of Cellular Biochemistry, June 1991, Wiley

    Professor Julian Parkhill

  265. Site-specific insertion and deletion mutants in the mer promoter-operator region of Tn 501 ; the nineteen base-pair spacer is essential for normal induction of the promoter by MerR

    Article • Nucleic Acids Research, January 1990, Oxford University Press (OUP)

    Professor Julian Parkhill

  266. Electronic Access to Mycobacterium tuberculosis Sequence Data

    Article • Springer Science + Business Media

    Professor Julian Parkhill

  267. 2 Bacterial Human Pathogen Genomes: an Overview

    Article • ASM Journals

    Professor Julian Parkhill

  268. The Significance of the CtBP — AdE1A Interaction during Viral Infection and Transformation

    Article • Springer Science + Business Media

    Professor Julian Parkhill