Publication
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
David Swarbreck, Taane G. Clark, Nicholas Matthews, Gregory M. Cooper, Mark C. Dickson, Paul I. W. de Bakker, Daryl J. Thomas, Andrew D. Kern, Matthew T. Weirauch, Nuria Lopez-Bigas, James Gilbert, Joel D. Martin, Jorg Drenkow, Barbara E. Stranger, Ian Bell, Daryl J. Thomas, XiaoDong Zhao, Abigail Woodroffe, K.G. Srinivasan, Serafim Batzoglou, Wing-Kin Sung, Eugene Davydov, Hong Sain Ooi, Antigone Dimas, Kuo Ping Chiu, Eduardo Eyras, Sylvain Foissac, Ingileif B. Hallgrímsdóttir, Tyler Alioto, Ross C. Hardison, Michael Brent, Julian Huppert, Lior Pachter, Arend Sidow, Michael L. Tress, James Taylor, Alfonso Valencia, Heather Trumbower, Siew Woh Choo, Michael C. Zody, Chiou Yu Choo, Roderic Guigó, Catherine Ucla, James C. Mullikin, Caroline Manzano, Gonçalo R. Abecasis, Carine Wyss, Xavier Estivill, Evelyn Cheung, Ewan Birney, Taane G. Clark, Gerard G. Bouffard, James B. Brown, Xiaobin Guan, Madhavan Ganesh, Nancy F. Hansen, Sandeep Patel, Jacquelyn R. Idol, Hari Tammana, Valerie V.B. Maduro, Jacqueline Chrast, Baishali Maskeri, Charlotte N. Henrichsen, Jennifer C. McDowell, Chikatoshi Kai, Morgan Park, Jun Kawai, Pamela J. Thomas, Ugrappa Nagalakshmi, Alice C. Young, Jiaqian Wu, Robert W. Blakesley, Zheng Lian, Donna M. Muzny, Jin Lian, Erica Sodergren, Peter Newburger, David A. Wheeler, Xueqing Zhang, Kim C. Worley, Peter Bickel, Huaiyang Jiang, John S. Mattick, George M. Weinstock, Piero Carninci, Richard A. Gibbs, Yoshihide Hayashizaki, Tina Graves, Sherman Weissman, Robert Fulton, Emmanouil T. Dermitzakis, Elaine R. Mardis, Elliott H. Margulies, Richard K. Wilson, Tim Hubbard, Michele Clamp, Richard M. Myers, James Cuff, Jane Rogers, Sante Gnerre, Peter F. Stadler, David B. Jaffe, Todd M. Lowe, Jean L. Chang, Chia-Lin Wei, Kerstin Lindblad-Toh, Yijun Ruan, Eric S. Lander, Michael Snyder, Maxim Koriabine, Ewan Birney, Mikhail Nefedov, Kevin Struhl, Kazutoyo Osoegawa, Mark Gerstein, Yuko Yoshinaga, Stylianos E. Antonarakis, Baoli Zhu, Thomas R. Gingeras, Pieter J. de Jong, James B. Brown, Paul Flicek, Yutao Fu, Damian Keefe, Ewan Birney, France Denoeud, Mark Gerstein, Eric D. Green, Philipp Kapranov, Ulaş Karaöz, Richard M. Myers, William S. Noble, Alexandre Reymond, Joel Rozowsky, Kevin Struhl, Adam Siepel, John A. Stamatoyannopoulos, Christopher M. Taylor, James Taylor, Robert E. Thurman, Thomas D. Tullius, Stefan Washietl, Deyou Zheng, Laura A. Liefer, Kris A. Wetterstrand, Peter J. Good, Elise A. Feingold, Mark S. Guyer, Francis S. Collins, Elliott H. Margulies, Gregory M. Cooper, George Asimenos, Daryl J. Thomas, Colin N. Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B. Brown, Haiyan Huang, Nancy R. Zhang, Peter Bickel, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Michael Seringhaus, Deanna Church, Kate Rosenbloom, W. James Kent, Eric A. Stone, NISC Comparative Sequencing Program*, Baylor College of Medicine Human Genome Sequencing Center*, Washington University Genome Sequencing Center*, Broad Institute*, Children’s Hospital Oakland Research Institute*, Mark Gerstein, Stylianos E. Antonarakis, Serafim Batzoglou, Nick Goldman, Ross C. Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D. Green, Arend Sidow, Zhiping Weng, Nathan D. Trinklein, Yutao Fu, Zhengdong D. Zhang, Ulaş Karaöz, Leah Barrera, Rhona Stuart, Deyou Zheng, Srinka Ghosh, Paul Flicek, David C. King, James Taylor, Adam Ameur, Stefan Enroth, Mark C. Bieda, Christoph M. Koch, Heather A. Hirsch, Chia-Lin Wei, Jill Cheng, Jonghwan Kim, Akshay A. Bhinge, Paul G. Giresi, Nan Jiang, Jun Liu, Fei Yao, Ewan Birney, Wing-Kin Sung, John A. Stamatoyannopoulos, Kuo Ping Chiu, Anindya Dutta, Vinsensius B. Vega, Roderic Guigó, Charlie W.H. Lee, Thomas R. Gingeras, Patrick Ng, Elliott H. Margulies, Atif Shahab, Zhiping Weng, Edward A. Sekinger, Michael Snyder, Annie Yang, Emmanouil T. Dermitzakis, Zarmik Moqtaderi, John A. Stamatoyannopoulos, Zhou Zhu, Robert E. Thurman, Xiaoqin Xu, Michael S. Kuehn, Sharon Squazzo, Christopher M. Taylor, Matthew J. Oberley, Shane Neph, David Inman, Christoph M. Koch, Michael A. Singer, Saurabh Asthana, Todd A. Richmond, Ankit Malhotra, Kyle J. Munn, Ivan Adzhubei, Alvaro Rada-Iglesias, Jason A. Greenbaum, Ola Wallerman, Robert M. Andrews, Jan Komorowski, Paul Flicek, Gayle K. Clelland, Patrick J. Boyle, Sarah Wilcox, Hua Cao, Shane C. Dillon, Nigel P. Carter, Robert M. Andrews, Gayle K. Clelland, Joanna C. Fowler, Sean Davis, Phillippe Couttet, Nathan Day, Keith D. James, Pawandeep Dhami, Gregory C. Lefebvre, Shane C. Dillon, Alexander W. Bruce, Michael O. Dorschner, Oliver M. Dovey, Heike Fiegler, Peter D. Ellis, Paul G. Giresi, Pawandeep Dhami, Jeff Goldy, Cordelia F. Langford, Michael Hawrylycz, Nigel P. Carter, Andrew Haydock, David Vetrie, Richard Humbert, Philipp Kapranov, Keith D. James, David A. Nix, Brett E. Johnson, Ian Bell, Ericka M. Johnson, Sandeep Patel, Tristan T. Frum, Joel Rozowsky, Elizabeth R. Rosenzweig, Ghia Euskirchen, Neerja Karnani, Stephen Hartman, Kirsten Lee, Jin Lian, Gregory C. Lefebvre, Jiaqian Wu, Patrick A. Navas, Alexander E. Urban, Fidencio Neri, Peter Kraus, Stephen C. J. Parker, Sara Van Calcar, Peter J. Sabo, Nate Heintzman, Richard Sandstrom, Tae Hoon Kim, Anthony Shafer, Kun Wang, David Vetrie, Chunxu Qu, Molly Weaver, Gary Hon, Sarah Wilcox, Rosa Luna, Man Yu1, Christopher K. Glass, Francis S. Collins, M. Geoff Rosenfeld, Job Dekker, Shelley Force Aldred, Jason D. Lieb, Sara J. Cooper, Thomas D. Tullius, Anason Halees, Gregory E. Crawford, Jane M. Lin, Shamil Sunyaev, Hennady P. Shulha, William S. Noble, Xiaoling Zhang, Ian Dunham, Mousheng Xu, Anindya Dutta, Jaafar N. S. Haidar, Roderic Guigó, Yong Yu, France Denoeud, Ewan Birney*, Alexandre Reymond, Sherman Weissman, Philipp Kapranov, Yijun Ruan, Joel Rozowsky, Jason D. Lieb, Deyou Zheng, Vishwanath R. Iyer, Robert Castelo, Roland D. Green, Adam Frankish, Thomas R. Gingeras, Jennifer Harrow, Claes Wadelius, Srinka Ghosh, Ian Dunham, Albin Sandelin, Kevin Struhl, Ivo L. Hofacker, Ross C. Hardison, Robert Baertsch, Mark Gerstein, Damian Keefe, Peggy J. Farnham, Paul Flicek, Richard M. Myers, Sujit Dike, Bing Ren, Jill Cheng, Michael Snyder, Heather A. Hirsch, Daryl J. Thomas, Edward A. Sekinger, Kate Rosenbloom, Julien Lagarde, Rachel A. Harte, Josep F. Abril, Angie S. Hinrichs, Atif Shahab, Heather Trumbower, Christoph Flamm, Hiram Clawson, Claudia Fried, Jennifer Hillman-Jackson, Jörg Hackermüller, Ann S. Zweig, Jana Hertel, Kayla Smith, Manja Lindemeyer, Archana Thakkapallayil, Kristin Missal, Galt Barber, Andrea Tanzer, Robert M. Kuhn, Stefan Washietl, Donna Karolchik, Jan Korbel, David Haussler, Olof Emanuelsson, W. James Kent, Jakob S. Pedersen, Emmanouil T. Dermitzakis, Nancy Holroyd, Lluis Armengol, Ruth Taylor, Christine P. Bird
Nature, June 2007, Nature
DOI: 10.1038/nature05874