All Stories

  1. EPIG-Seq for identifying co-expressed genes from RNA-Seq data
  2. Abstract 1972: LIN28 gene targets are key mediators of breast cancer disease processes
  3. LIN28A modulates splicing and gene expression programs in breast cancer cells
  4. Technical guide for applications of gene expression profiling in human health risk assessment of environmental chemicals
  5. Toxicogenomics profiling of bone marrow from rats treated with topotecan in combination with oxaliplatin: a mechanistic strategy to inform combination toxicity
  6. Novel Roles for Notch3 and Notch4 Receptors in Gene Expression and Susceptibility to Ozone-Induced Lung Inflammation in Mice
  7. Development of Phenotypic and Transcriptional Biomarkers to Evaluate Relative Activity of Potentially Estrogenic Chemicals in Ovariectomized Mice
  8. The rat microRNA body atlas: Towards understanding serum microRNA changes and their utilisation as biomarkers of specific organ toxicity
  9. The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
  10. Dynamic expression of 3′ UTRs revealed by Poisson hidden Markov modeling of RNA-Seq: Implications in gene expression profiling
  11. Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification
  12. Gene Expression in Uterine Leiomyoma from Tumors Likely to Be Growing (from Black Women over 35) and Tumors Likely to Be Non-Growing (from White Women over 35)
  13. p53 integrates host defense and cell fate during bacterial pneumonia
  14. p53 integrates host defense and cell fate during bacterial pneumonia
  15. Widespread Exonization of Transposable Elements in Human Coding Sequences is Associated with Epigenetic Regulation of Transcription
  16. Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes
  17. Transcriptional responses to loss of RNase H2 in Saccharomyces cerevisiae
  18. Sources of variance in baseline gene expression in the rodent liver
  19. Research Resource: Whole-Genome Estrogen Receptor α Binding in Mouse Uterine Tissue Revealed by ChIP-Seq
  20. Population Differences in Transcript-Regulator Expression Quantitative Trait Loci
  21. The Impact of Classification of Interest on Predictive Toxicogenomics
  22. Identification of Identical Transcript Changes in Liver and Whole Blood during Acetaminophen Toxicity
  23. Maximizing biomarker discovery by minimizing gene signatures
  24. The Evolution of Bioinformatics in Toxicology: Advancing Toxicogenomics
  25. Development of gut microbiota in infants not exposed to medical interventions
  26. CLUSTERING OF GENE EXPRESSION DATA AND END-POINT MEASUREMENTS BY SIMULATED ANNEALING
  27. Proceedings of the First International Conference on Toxicogenomics Integrated with Environmental Sciences (TIES-2007)
  28. Discernment of possible mechanisms of hepatotoxicity via biological processes over-represented by co-expressed genes
  29. Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
  30. Global Transcriptome and Deletome Profiles of Yeast Exposed to Transition Metals
  31. Genes related to apoptosis predict necrosis of the liver as a phenotype observed in rats exposed to a compendium of hepatotoxicants
  32. Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories
  33. Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype
  34. Identification of Primary Transcriptional Regulation of Cell Cycle-Regulated Genes upon DNA Damage
  35. Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes
  36. Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes
  37. Toxicogenomics
  38. Profiles of Global Gene Expression in Ionizing-Radiation–Damaged Human Diploid Fibroblasts Reveal Synchronization behind the G1 Checkpoint in a G0-like State of Quiescence
  39. PAGE: phase-shifted analysis of gene expression
  40. The Chemical Effects in Biological Systems (CEBS) Knowledge Base
  41. SYSTEMATIC VARIATION NORMALIZATION IN MICROARRAY DATA TO GET GENE EXPRESSION COMPARISON UNBIASED
  42. Databases for Toxicogenomics
  43. Integration of clinical and gene expression endpoints to explore furan-mediated hepatotoxicity
  44. Database Development in Toxicogenomics: Issues and Efforts
  45. DATABASE DEVELOPMENT IN TOXICOGENOMICS: ISSUES AND EFFORTS
  46. ATM-Dependent and -Independent Gene Expression Changes in Response to Oxidative Stress, Gamma Irradiation, and UV Irradiation
  47. Identification of distinct and common gene expression changes after oxidative stress and gamma and ultraviolet radiation
  48. Genomic interrogation of mechanism(s) underlying cellular responses to toxicants
  49. Systems Toxicology and the Chemical Effects in Biological Systems (CEBS) Knowledge Base
  50. Alterations in apoptotic signaling in human idiopathic cardiomyopathic hearts in failure
  51. Methapyrilene Toxicity: Anchorage of Pathologic Observations to Gene Expression Alterations
  52. Gene expression pattern recognition algorithm inferences to classify samples exposed to chemical agents
  53. Regulation of DNA Replication Fork Genes by 17β-Estradiol
  54. Computational selection of distinct class- and subclass-specific gene expression signatures
  55. Methapyrilene Toxicity: Anchorage of Pathologic Observations to Gene Expression Alterations
  56. Systems Toxicology and the Chemical Effects in Biological Systems (CEBS) Knowledge Base
  57. Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models
  58. Progress in the Application of DNA Microarrays
  59. Progress in the Application of DNA Microarrays
  60. Combination of functional genomics approaches and microarray analyses to define candidate senescence genes
  61. ATM-dependent responses to DNA-damaging agents
  62. Discovery in toxicology: Mediation by gene expression array technology
  63. Discovery in toxicology: Mediation by gene expression array technology
  64. Principal Variance Components Analysis: Estimating Batch Effects in Microarray Gene Expression Data