All Stories

  1. A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project

    Article • Wellcome Open Research, June 2024, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  2. The genome sequence of the nematode Caenorhabditis drosophilae (Rhabditida, Rhabditidae) (Kiontke, 1997)

    Article • Wellcome Open Research, May 2024, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  3. MarkerScan: Separation and assembly of cobionts sequenced alongside target species in biodiversity genomics projects

    Article • Wellcome Open Research, February 2024, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  4. The genome sequence of the Tipped Oak Case-bearer, Coleophora flavipennella (Duponchel 1843)

    Article • Wellcome Open Research, January 2024, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  5. The genome sequence of the brown sea anemone, Metridium senile (Linnaeus, 1761)

    Article • Wellcome Open Research, November 2023, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  6. The genome sequence of the Beautiful Hook-tip, Laspeyria flexula (Denis & Schiffermüller, 1775)

    Article • Wellcome Open Research, November 2023, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  7. The genome sequence of the common earthworm, Lumbricus terrestris (Linnaeus, 1758)

    Article • Wellcome Open Research, October 2023, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  8. plastiC: A pipeline for recovery and characterization of plastid genomes from metagenomic datasets

    Article • Wellcome Open Research, October 2023, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  9. Respiratory syncytial virus directly binds miR-26, miR-27, and let-7 to de-repress gene targets through canonical and non-canonical mechanisms

    Article • June 2023, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  10. The genome sequence of the crab hacker barnacle, Sacculina carcini (Thompson, 1836)

    Article • Wellcome Open Research, February 2023, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  11. Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life

    Article • Wellcome Open Research, January 2023, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  12. The genome sequence of the bootlace worm, Lineus longissimus (Gunnerus, 1770)

    Article • Wellcome Open Research, October 2021, Faculty of 1000, Ltd.

    Dr Sujai Kumar

  13. Extracellular RNA moves from the glomerulus to the renal tubule

    Article • June 2021, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  14. MolluscDB: a genome and transcriptome database for molluscs

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, April 2021, Royal Society Publishing

    Dr Sujai Kumar

  15. Analysis of High Molecular Weight RNA-induced silencing complex (HMW-RISC) in CD8+ T cells identifies miR-7 as a modulator of T cell activation

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  16. Comparative analysis of small RNAs released by the filarial nematode Litomosoides sigmodontis in vitro and in vivo

    Article • PLoS Neglected Tropical Diseases, November 2019, PLOS

    Dr Sujai Kumar

  17. Genomic architecture and introgression shape a butterfly radiation

    Article • Science, October 2019, American Association for the Advancement of Science

    Dr Sujai Kumar

  18. Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides

    Article • Nucleic Acids Research, March 2019, Oxford University Press (OUP)

    Dr Sujai Kumar

  19. Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast-Z effect in Heliconius

    Article • Journal of Evolutionary Biology, January 2019, Wiley

    Dr Sujai Kumar

  20. Silent crickets reveal the genomic footprint of recent adaptive trait loss

    Article • December 2018, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  21. Genomic architecture and introgression shape a butterfly radiation

    Article • November 2018, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  22. Comparative genomics of the major parasitic worms

    Article • Nature Genetics, November 2018, Springer Science + Business Media

    Professor Petr Horák, Dr Sujai Kumar

  23. Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus

    Article • PLoS Biology, July 2017, PLOS

    Dr Sujai Kumar

  24. A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana

    Article • GigaScience, May 2017, Oxford University Press (OUP)

    Ben Elsworth, Dr Sujai Kumar

  25. GenomeHubs: Simple containerised setup of a custom Ensembl database and web server for any species

    Article • March 2017, PeerJ

    Dr Sujai Kumar

  26. GenomeHubs: Simple containerised setup of a custom Ensembl database and web server for any species

    Article • March 2017, PeerJ

    Dr Sujai Kumar

  27. Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus

    Article • March 2017, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  28. GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species

    Article • Database, January 2017, Oxford University Press (OUP)

    Dr Sujai Kumar

  29. EasyMirror and EasyImport: Simplifying the setup of a custom Ensembl database and webserver for any species

    Article • August 2016, PeerJ

    Dr Sujai Kumar

  30. Lepbase: the Lepidopteran genome database

    Article • June 2016, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  31. No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini

    Article • Proceedings of the National Academy of Sciences, March 2016, Proceedings of the National Academy of Sciences

    Dr Sujai Kumar

  32. No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini

    Article • December 2015, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  33. Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity

    Article • Nature Communications, October 2015, Springer Science + Business Media

    Dr Sujai Kumar

  34. Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity

    Article • Nature Communications, November 2014, Nature

    Dr Sujai Kumar

  35. Comparative Analysis of the Secretome from a Model Filarial Nematode (Litomosoides sigmodontis) Reveals Maximal Diversity in Gravid Female Parasites

    Article • Molecular & Cellular Proteomics, June 2014, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Sujai Kumar

  36. The complex hybrid origins of the root knot nematodes revealed through comparative genomics

    Article • PeerJ, May 2014, PeerJ

    Dr Sujai Kumar

  37. Phylogenomics and Analysis of Shared Genes Suggest a Single Transition to Mutualism in Wolbachia of Nematodes

    Article • Genome Biology and Evolution, August 2013, Oxford University Press (OUP)

    Dr Sujai Kumar, Dr Alistair C Darby

  38. Sulfur Amino Acids Regulate Translational Capacity and Metabolic Homeostasis through Modulation of tRNA Thiolation

    Article • Cell, July 2013, Elsevier

    Dr Sujai Kumar

  39. The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    Dr Sujai Kumar

  40. Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

    Article • Frontiers in Genetics, January 2013, Frontiers

    Dr Sujai Kumar

  41. Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells

    Article • Developmental Cell, November 2012, Elsevier

    Dr Sujai Kumar

  42. The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets

    Article • The FASEB Journal, August 2012, Federation of American Societies For Experimental Biology (FASEB)

    Dr Sujai Kumar, Daniel Nilsson

  43. Genomics and transcriptomics across the diversity of the Nematoda

    Article • Parasite Immunology, February 2012, Wiley

    Dr Sujai Kumar, Ben Elsworth

  44. Toward 959 nematode genomes

    Article • Worm, January 2012, Taylor & Francis

    Dr Sujai Kumar

  45. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects

    Article • Nucleic Acids Research, November 2011, Oxford University Press (OUP)

    Dr Sujai Kumar

  46. Simultaneous genome sequencing of symbionts and their hosts

    Article • Symbiosis, November 2011, Springer Science + Business Media

    Dr Sujai Kumar

  47. Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at theHmYb/Sblocus

    Article • Molecular Ecology, March 2010, Wiley

    Dr Sujai Kumar, Dr Alexie Papanicolaou

  48. Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites

    Article • BMC Genomics, January 2010, Springer Science + Business Media

    Dr Sujai Kumar

  49. Comparing de novo assemblers for 454 transcriptome data

    Article • BMC Genomics, January 2010, Springer Science + Business Media

    Dr Sujai Kumar

  50. Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

    Article • Genome Research, May 2009, Cold Spring Harbor Laboratory Press

    Dr Sujai Kumar

  51. Let SMIL be your umbrella: Software tools for transcribing, coding, and presenting digital video in behavioral research

    Article • Behavior Research Methods, May 2005, Springer Science + Business Media

    Dr Sujai Kumar