All Stories

  1. Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species

    Article • BMC Biology, July 2017, Springer Science + Business Media

    Dr Alexie Papanicolaou, Philip Batterham, Yidong Wu

  2. Complex modular architecture around a simple toolkit of wing pattern genes

    Article • Nature Ecology & Evolution, January 2017, Nature

    Dr Alexie Papanicolaou

  3. Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

    Article • January 2017, Springer Science + Business Media

    Dr Alexie Papanicolaou, Ph.D. Marco Salvemini

  4. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

    Article • September 2016, Springer Science + Business Media

    Dr Alexie Papanicolaou, Ph.D. Marco Salvemini

  5. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta

    Article • Insect Biochemistry and Molecular Biology, August 2016, Elsevier

    Dr Alexie Papanicolaou, Ewald Grosse-Wilde

  6. Transcriptome Analysis of the Sydney Rock Oyster, Saccostrea glomerata: Insights into Molluscan Immunity

    Article • PLoS ONE, June 2016, PLOS

    Dr Alexie Papanicolaou

  7. Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data

    Article • Immunogenetics, June 2016, Springer Science + Business Media

    Dr Alexie Papanicolaou

  8. Expansion of a bitter taste receptor family in a polyphagous insect herbivore

    Article • Scientific Reports, April 2016, Nature

    Dr Alexie Papanicolaou

  9. The second era of genome projects

    Article • F1000Research, January 2016, Faculty of 1000, Ltd.

    Dr Alexie Papanicolaou

  10. OfftargetFinder: a web tool for species-specific RNAi design

    Article • Bioinformatics, December 2015, Oxford University Press (OUP)

    Dr Alexie Papanicolaou

  11. Identification of Putative Nuclear Receptors and Steroidogenic Enzymes in Murray-Darling Rainbowfish (Melanotaenia fluviatilis) Using RNA-Seq and De Novo Transcriptome Assembly

    Article • PLoS ONE, November 2015, PLOS

    Dr Alexie Papanicolaou

  12. Genomewide transcriptional signatures of migratory flight activity in a globally invasive insect pest

    Article • Molecular Ecology, September 2015, Wiley

    Dr Alexie Papanicolaou

  13. Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia

    Article • BMC Genomics, March 2015, Springer Science + Business Media

    Dr Alexie Papanicolaou

  14. Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen Scedosporium aurantiacum

    Article • Genome Announcements, February 2015, ASM Journals

    Dr Alexie Papanicolaou

  15. Chemosensory receptor genes in the Oriental tobacco budwormHelicoverpa assulta

    Article • Insect Molecular Biology, November 2014, Wiley

    Dr Alexie Papanicolaou

  16. Comparative genomics of the mimicry switch in Papilio dardanus

    Article • Proceedings of the Royal Society B Biological Sciences, June 2014, Royal Society Publishing

    Dr Alexie Papanicolaou

  17. Blue: correcting sequencing errors using consensus and context

    Article • Bioinformatics, June 2014, Oxford University Press (OUP)

    Dr Alexie Papanicolaou

  18. Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera

    Article • BMC Genomics, January 2014, Springer Science + Business Media

    Dr Alexie Papanicolaou

  19. Novel aquatic silk genes from Simulium (Psilozia) vittatum (Zett) Diptera: Simuliidae

    Article • Insect Biochemistry and Molecular Biology, December 2013, Elsevier

    Dr Alexie Papanicolaou

  20. The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

    Article • Journal of Heredity, August 2013, Oxford University Press (OUP)

    Dr Alexie Papanicolaou

  21. Trinity: the de-novo transcriptome assembly and analysis platform

    Article • Nature Protocols, July 2013, Nature

    Dr Alexie Papanicolaou, Dr David A Eccles

  22. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

    Article • Nature, May 2012, Springer Science + Business Media

    Dr Alexie Papanicolaou

  23. A Roadmap for Whitefly Genomics Research: Lessons from Previous Insect Genome Projects

    Article • Journal of Integrative Agriculture, February 2012, Elsevier

    Dr Alexie Papanicolaou

  24. Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Dr Alexie Papanicolaou

  25. RNA interference in Lepidoptera: An overview of successful and unsuccessful studies and implications for experimental design

    Article • Journal of Insect Physiology, February 2011, Elsevier

    Dr Ioannis Eleftherianos, Professor Kostas Iatrou, Dr Alexie Papanicolaou

  26. The GMOD Drupal Bioinformatic Server Framework

    Article • Bioinformatics, October 2010, Oxford University Press (OUP)

    Dr Alexie Papanicolaou

  27. Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at theHmYb/Sblocus

    Article • Molecular Ecology, March 2010, Wiley

    Dr Sujai Kumar, Dr Alexie Papanicolaou

  28. Next generation transcriptomes for next generation genomes using est2assembly

    Article • BMC Bioinformatics, January 2009, Springer Science + Business Media

    Dr Alexie Papanicolaou

  29. ButterflyBase: a platform for lepidopteran genomics

    Article • Nucleic Acids Research, December 2007, Oxford University Press (OUP)

    Dr Alexie Papanicolaou

  30. Synteny and Chromosome Evolution in the Lepidoptera: Evidence From Mapping in Heliconius melpomene

    Article • Genetics, July 2007, Genetics Society of America

    Dr Alexie Papanicolaou

  31. Butterfly genomics eclosing

    Article • Heredity, February 2007, Nature

    Dr Alexie Papanicolaou

  32. Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity

    Article • Heredity, July 2006, Nature

    Dr Alexie Papanicolaou

  33. Genomic tools and cDNA derived markers for butterflies

    Article • Molecular Ecology, August 2005, Wiley

    Dr Alexie Papanicolaou

  34. Installing the GMOD Drupal Bioinformatic Server Framework

    Article • SciVee, Inc

    Dr Alexie Papanicolaou

  35. Feature curation - version beta

    Article • SciVee, Inc

    Dr Alexie Papanicolaou

  36. Installing the GMOD Drupal Bioinformatics Server Framework

    Article • SciVee, Inc

    Dr Alexie Papanicolaou

  37. Installing and using the Drupal Bioinformatics Software Bench

    Article • SciVee, Inc

    Dr Alexie Papanicolaou

  38. How to use the genes4all RNAi experiment module

    Article • SciVee, Inc

    Dr Alexie Papanicolaou