All Stories

  1. Accelerators: Sparking Innovation and Transdisciplinary Team Science in Disparities Research

    Article • International Journal of Environmental Research and Public Health, February 2017, MDPI AG

    Dr SHAMEER KHADER

  2. Intracoronary Imaging, Cholesterol Efflux, and Transcriptomes After Intensive Statin Treatment

    Article • Journal of the American College of Cardiology, February 2017, Elsevier

    Dr SHAMEER KHADER

  3. Shared decision-making following disclosure of coronary heart disease genetic risk: results from a randomized clinical trial

    Article • Journal of Investigative Medicine, December 2016, BMJ

    Dr SHAMEER KHADER

  4. Systems Medicine Approaches to Improving Understanding, Treatment, and Clinical Management of Neuroendocrine Prostate Cancer

    Article • Current Pharmaceutical Design, November 2016, Bentham Science Publishers

    Dr SHAMEER KHADER

  5. Machine-Learning Algorithms to Automate Morphological and Functional Assessments in 2D Echocardiography

    Article • Journal of the American College of Cardiology, November 2016, Elsevier

    Dr SHAMEER KHADER

  6. Network Modules Driving Plant Stress Response, Tolerance and Adaptation: A case study using Abscisic acid Induced Protein-protein Interactome of Arabidopsis thaliana

    Article • September 2016, Cold Spring Harbor Laboratory Press

    Dr SHAMEER KHADER

  7. Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks

    Article • Bioinformatics, June 2016, Oxford University Press (OUP)

    Dr SHAMEER KHADER

  8. Cognitive Machine-Learning Algorithm for Cardiac ImagingCLINICAL PERSPECTIVE

    Article • Circulation Cardiovascular Imaging, June 2016, Wolters Kluwer Health

    Dr SHAMEER KHADER

  9. Su1858 Integrative Networks Identify Novel Regulators of Susceptibility and Pathogenesis of Inflammatory Bowel Disease

    Article • Gastroenterology, April 2016, Elsevier

    Dr SHAMEER KHADER

  10. EHDViz: clinical dashboard development using open-source technologies

    Article • BMJ Open, March 2016, BMJ

    Dr SHAMEER KHADER

  11. Incorporating a Genetic Risk Score Into Coronary Heart Disease Risk EstimatesCLINICAL PERSPECTIVE

    Article • Circulation, February 2016, Wolters Kluwer Health

    Dr SHAMEER KHADER

  12. Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams

    Article • Briefings in Bioinformatics, February 2016, Oxford University Press (OUP)

    Dr SHAMEER KHADER

  13. Transcriptional regulatory networks inArabidopsis thalianaduring single and combined stresses

    Article • Nucleic Acids Research, December 2015, Oxford University Press (OUP)

    Dr SHAMEER KHADER, Mahantesha BN Naika

  14. Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment

    Article • Briefings in Bioinformatics, October 2015, Oxford University Press (OUP)

    Dr SHAMEER KHADER

  15. Cardiomyopathy and Worsened Ischemic Heart Failure in SM22-  Cre-Mediated Neuropilin-1 Null Mice: Dysregulation of PGC1  and Mitochondrial Homeostasis

    Article • Arteriosclerosis Thrombosis and Vascular Biology, April 2015, Wolters Kluwer Health

    Dr SHAMEER KHADER

  16. Computational and Experimental Advances in Drug Repositioning for Accelerated Therapeutic Stratification

    Article • Current Topics in Medicinal Chemistry, January 2015, Bentham Science Publishers

    Dr SHAMEER KHADER

  17. The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data

    Article • Nucleic Acids Research, October 2014, Oxford University Press (OUP)

    Dr SHAMEER KHADER

  18. Whole Exome Sequencing Implicates an INO80D Mutation in a Syndrome of Aortic Hypoplasia, Premature Atherosclerosis, and Arterial Stiffness

    Article • Circulation Cardiovascular Genetics, August 2014, Wolters Kluwer Health

    Dr SHAMEER KHADER

  19. Population Distribution Analyses Reveal a Hierarchy of Molecular Players Underlying Parallel Endocytic Pathways

    Article • PLoS ONE, June 2014, PLOS

    Dr SHAMEER KHADER

  20. The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study

    Article • Frontiers in Genetics, June 2014, Frontiers

    Dr SHAMEER KHADER

  21. Understanding Protein–Nanoparticle Interaction: A New Gateway to Disease Therapeutics

    Article • Bioconjugate Chemistry, June 2014, American Chemical Society (ACS)

    Dr SHAMEER KHADER

  22. A NOVEL GENOMIC SUSCEPTIBILITY LOCUS FOR PERIPHERAL ARTERIAL DISEASE ON CHROMOSOME 12

    Article • Journal of the American College of Cardiology, April 2014, Elsevier

    Dr SHAMEER KHADER

  23. Clinical Correlates of Autosomal Chromosomal Abnormalities in an Electronic Medical Record–Linked Genome-Wide Association Study

    Article • Journal of Investigative Medicine High Impact Case Reports, November 2013, SAGE Publications

    Dr SHAMEER KHADER

  24. A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects

    Article • Human Genetics, September 2013, Springer Science + Business Media

    Dr SHAMEER KHADER

  25. Abstract 3185: The eSNV-Detect: a computational system to identify expressed single nucleotide variants from tumor transcriptomes.

    Article • Cancer Research, April 2013, American Association for Cancer Research (AACR)

    Dr SHAMEER KHADER

  26. STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

    Article • Plant and Cell Physiology, January 2013, Oxford University Press (OUP)

    Dr SHAMEER KHADER, Mahantesha BN Naika

  27. Comparative analyses of stress-responsive genes in Arabidopsis thaliana: insight from genomic data mining, functional enrichment, pathway analysis and phenomics

    Article • Molecular BioSystems, January 2013, Royal Society of Chemistry

    Dr SHAMEER KHADER, Mahantesha BN Naika

  28. Genetic Loci Implicated in Erythroid Differentiation and Cell Cycle Regulation Are Associated With Red Blood Cell Traits

    Article • Mayo Clinic Proceedings, May 2012, Elsevier

    Dr SHAMEER KHADER

  29. BioStar: An Online Question & Answer Resource for the Bioinformatics Community

    Article • PLoS Computational Biology, October 2011, PLOS

    Dr SHAMEER KHADER

  30. 3dswap-pred: Prediction of 3D Domain Swapping from Protein Sequence Using Random Forest Approach

    Article • Protein and Peptide Letters, October 2011, Bentham Science Publishers

    Dr SHAMEER KHADER

  31. Ten Simple Rules for Getting Help from Online Scientific Communities

    Article • PLoS Computational Biology, September 2011, PLOS

    Professor Jaume Bertranpetit, Dr SHAMEER KHADER, Dr Colin Gillespie

  32. 3DSwap: curated knowledgebase of proteins involved in 3D domain swapping

    Article • Database, September 2011, Oxford University Press (OUP)

    Dr SHAMEER KHADER

  33. Modulation of Catalytic Activity in Multi-Domain Protein Tyrosine Phosphatases

    Article • PLoS ONE, September 2011, PLOS

    Dr SHAMEER KHADER

  34. Complement Receptor 1 Gene Variants Are Associated with Erythrocyte Sedimentation Rate

    Article • The American Journal of Human Genetics, July 2011, Elsevier

    Dr SHAMEER KHADER

  35. ASSOCIATION OF A POLYMORPHISM IN SLCO1B1 WITH STATIN-INDUCED MYALGIAS, MYOSITIS AND MYOPATHY: AN ELECTRONIC MEDICAL RECORD BASED PHARMACOGENETIC STUDY

    Article • Journal of the American College of Cardiology, April 2011, Elsevier

    Dr SHAMEER KHADER

  36. Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition

    Article • February 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Dr SHAMEER KHADER

  37. A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families

    Article • December 2010, Institute of Electrical & Electronics Engineers (IEEE)

    Dr SHAMEER KHADER

  38. PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes

    Article • BMC Bioinformatics, September 2010, Springer Science + Business Media

    B Gopal, Dr SHAMEER KHADER

  39. A bioinformatics protocol for the identification of spatial clusters and the calculation of higher order residue interactions in protein structures

    Article • Protocol Exchange, April 2010, Nature

    Dr SHAMEER KHADER

  40. HORI: a web server to compute Higher Order Residue Interactions in protein structures

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Dr SHAMEER KHADER

  41. 3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach

    Article • BioData Mining, December 2009, Springer Science + Business Media

    Dr SHAMEER KHADER

  42. STIF: Identification of stress-upregulated transcription factor binding sites in Arabidopsis thaliana

    Article • Bioinformation, July 2008, Biomedical Informatics

    Dr SHAMEER KHADER

  43. PURE: A webserver for the prediction of domains in unassigned regions in proteins

    Article • BMC Bioinformatics, January 2008, Springer Science + Business Media

    Dr SHAMEER KHADER

  44. PURE: a web server for querying the relationship between pre-existing domains and unassigned regions in proteins

    Article • Protocol Exchange, November 2007, Nature

    Dr SHAMEER KHADER

  45. HARMONY: a server for the assessment of protein structures

    Article • Nucleic Acids Research, July 2006, Oxford University Press (OUP)

    Dr SHAMEER KHADER