All Stories

  1. Correlated pseudo-marginal schemes for time-discretised stochastic kinetic models

    Article • Computational Statistics & Data Analysis, August 2019, Elsevier

    Dr Colin Gillespie

  2. Guided proposals for efficient weighted stochastic simulation

    Article • The Journal of Chemical Physics, June 2019, American Institute of Physics

    Dr Colin Gillespie

  3. Guided proposals for efficient weighted stochastic simulation

    Article • May 2019, Cold Spring Harbor Laboratory Press

    Dr Colin Gillespie

  4. Extension of the gambin model to multimodal species abundance distributions

    Article • Methods in Ecology and Evolution, December 2018, Wiley

    Dr Colin Gillespie

  5. Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences

    Article • Scientific Reports, November 2018, Springer Science + Business Media

    Dr Colin Gillespie

  6. Efficient construction of Bayes optimal designs for stochastic process models

    Article • Statistics and Computing, September 2018, Springer Science + Business Media

    Dr Colin Gillespie

  7. Bayesian inference for a partially observed birth-death process using data on proportions

    Article • Australian & New Zealand Journal of Statistics, May 2018, Wiley

    Dr Colin Gillespie

  8. Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences.

    Article • May 2018, Cold Spring Harbor Laboratory Press

    Dr Paul A Hoskisson, Dr Colin Gillespie

  9. B-cell activity markers are associated with different disease activity domains in primary Sjögren’s syndrome

    Article • Rheumatology, March 2018, Oxford University Press (OUP)

    Dr Colin Gillespie

  10. Comparison of ESSDAI and ClinESSDAI in potential optimisation of trial outcomes in primary Sjögren’s syndrome: examination of data from the UK Primary Sjögren’s Syndrome Registry

    Article • Swiss Medical Weekly, February 2018, EMH Swiss Medical Publishers, Ltd.

    Dr Colin Gillespie

  11. Estimating the number of casualties in the American Indian war: A Bayesian analysis using the power law distribution

    Article • The Annals of Applied Statistics, December 2017, Institute of Mathematical Statistics

    Dr Colin Gillespie

  12. The role of interleukin-1β as a predictive biomarker and potential therapeutic target during clinical ex vivo lung perfusion

    Article • The Journal of Heart and Lung Transplantation, September 2017, Elsevier

    Dr Colin Gillespie

  13. Growth rate control of flagellar assembly in Escherichia coli strain RP437

    Article • Scientific Reports, January 2017, Springer Science + Business Media

    Dr Colin Gillespie

  14. Profiling inflammation and tissue injury markers in perfusate and bronchoalveolar lavage fluid during humanex vivolung perfusion

    Article • European Journal of Cardio-Thoracic Surgery, January 2017, Oxford University Press (OUP)

    Dr Colin Gillespie, Stephen clark

  15. Fatigue in primary Sjögren's syndrome is associated with lower levels of proinflammatory cytokines

    Article • RMD Open, July 2016, BMJ

    Dr Colin Gillespie

  16. Treating Donor Lung Inflammation by Blocking Interleukin-1Β - An In Vitro Therapy Testing Platform for Ex Vivo Lung Perfusion

    Article • The Journal of Heart and Lung Transplantation, April 2016, Elsevier

    Dr Colin Gillespie

  17. Pseudomonas aeruginosaInduced Airway Epithelial Injury Drives Fibroblast Activation: A Mechanism in Chronic Lung Allograft Dysfunction

    Article • Arabian archaeology and epigraphy, February 2016, Wiley

    Dr Colin Gillespie

  18. Diagnostics for assessing the linear noise and moment closure approximations

    Article • Statistical Applications in Genetics and Molecular Biology, January 2016, De Gruyter

    Dr Colin Gillespie

  19. A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome

    Article • PLoS ONE, December 2015, PLOS

    Dr Colin Gillespie

  20. Eligibility for clinical trials in primary Sjögren’s syndrome: lessons from the UK Primary Sjögren’s Syndrome Registry

    Article • Rheumatology, October 2015, Oxford University Press (OUP)

    Dr Colin Gillespie

  21. Likelihood free inference for Markov processes: a comparison

    Article • Statistical Applications in Genetics and Molecular Biology, January 2015, De Gruyter

    Dr Colin Gillespie

  22. Fitting Heavy Tailed Distributions: ThepoweRlawPackage

    Article • Journal of Statistical Software, January 2015, Foundation for Open Access Statistic

    Dr Colin Gillespie

  23. Scalable inference for Markov processes with intractable likelihoods

    Article • Statistics and Computing, November 2014, Springer Science + Business Media

    Dr Colin Gillespie

  24. Simulation of Stochastic Kinetic Models

    Article • January 2013, Springer Science + Business Media

    Dr Colin Gillespie

  25. An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB

    Article • Bioinformatics, September 2012, Oxford University Press (OUP)

    Dr Colin Gillespie

  26. A Stochastic Step Model of Replicative Senescence Explains ROS Production Rate in Ageing Cell Populations

    Article • PLoS ONE, February 2012, PLOS

    Dr Colin Gillespie

  27. Moment closure based parameter inference of stochastic kinetic models

    Article • Statistics and Computing, January 2012, Springer Science + Business Media

    Dr Colin Gillespie

  28. Stochastic simulation of chemically reacting systems using multi-core processors

    Article • The Journal of Chemical Physics, January 2012, American Institute of Physics

    Dr Colin Gillespie

  29. Ocean acidification takes sperm back in time

    Article • Invertebrate Reproduction & Development, December 2011, Taylor & Francis

    Dr Colin Gillespie, Dr Susan C Fitzer

  30. Ten Simple Rules for Getting Help from Online Scientific Communities

    Article • PLoS Computational Biology, September 2011, PLOS

    Professor Jaume Bertranpetit, Dr SHAMEER KHADER, Dr Colin Gillespie

  31. Combined proteomic and transcriptomic analysis of the response of Bacillus anthracis to oxidative stress

    Article • PROTEOMICS, July 2011, Wiley

    Dr Colin Gillespie

  32. Moment closure approximations for stochastic kinetic models with rational rate laws

    Article • Mathematical Biosciences, June 2011, Elsevier

    Dr Colin Gillespie

  33. Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays

    Article • BMC Research Notes, March 2010, Springer Science + Business Media

    Dr Colin Gillespie

  34. CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models

    Article • Briefings in Bioinformatics, January 2010, Oxford University Press (OUP)

    Dr Colin Gillespie

  35. Pattern recognition receptor expression is not impaired in patients with chronic mucocutanous candidiasis with or without autoimmune polyendocrinopathy candidiasis ectodermal dystrophy

    Article • Clinical & Experimental Immunology, April 2009, Wiley

    David Young, Dr Colin Gillespie

  36. The SBML discrete stochastic models test suite

    Article • Bioinformatics, November 2007, Oxford University Press (OUP)

    Dr Colin Gillespie

  37. An improved saddlepoint approximation

    Article • Mathematical Biosciences, August 2007, Elsevier

    Dr Colin Gillespie

  38. THREE DIMENSIONAL CUSTOMISATION: EFFECT OF STATISTICAL TECHNIQUE ON HJC PREDICTION EQUATIONS IN CHILDREN

    Article • Journal of Biomechanics, January 2007, Elsevier

    Dr Colin Gillespie

  39. Modelling the checkpoint response to telomere uncapping in budding yeast

    Article • Journal of The Royal Society Interface, August 2006, Royal Society Publishing

    Dr Colin Gillespie

  40. Tools for the SBML Community

    Article • Bioinformatics, January 2006, Oxford University Press (OUP)

    Dr Colin Gillespie

  41. The evolution of a batch-immigration death process subject to counts

    Article • Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences, April 2005, Royal Society Publishing

    Dr Colin Gillespie

  42. Computer Modeling in the Study of Aging

    Article • January 2005, Elsevier

    Professor Thomas B L Kirkwood, Dr Colin Gillespie

  43. Modelling the actions of chaperones and their role in ageing

    Article • Mechanisms of Ageing and Development, January 2005, Elsevier

    Professor Thomas B L Kirkwood, Dr Colin Gillespie

  44. A mathematical model of ageing in yeast

    Article • Journal of Theoretical Biology, July 2004, Elsevier

    Professor Thomas B L Kirkwood, Dr Colin Gillespie

  45. Towards an e-biology of ageing: integrating theory and data

    Article • Nature Reviews Molecular Cell Biology, March 2003, Springer Science + Business Media

    Professor Thomas B L Kirkwood, Dr Colin Gillespie