All Stories

  1. Time-dependent heterogeneity leads to transient suppression of the COVID-19 epidemic, not herd immunity

    Article • Proceedings of the National Academy of Sciences, April 2021, Proceedings of the National Academy of Sciences

    Prof Sergei Maslov

  2. Complementary resource preferences spontaneously emerge in diauxic microbial communities

    Article • March 2021, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  3. Ecology-guided prediction of cross-feeding interactions in the human gut microbiome

    Article • Nature Communications, February 2021, Springer Science + Business Media

    Prof Sergei Maslov

  4. Reduction of chaos in molecular sequences at the Origin of Life

    Article • Proceedings of the National Academy of Sciences, February 2021, Proceedings of the National Academy of Sciences

    Dieter Braun, Prof Sergei Maslov

  5. Stochastic social behavior coupled to COVID-19 dynamics leads to waves, plateaus and an endemic state

    Article • February 2021, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  6. Modeling COVID-19 Dynamics in Illinois under Nonpharmaceutical Interventions

    Article • Physical Review X, November 2020, American Physical Society (APS)

    Prof Sergei Maslov

  7. The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification

    Article • Nature Ecology & Evolution, October 2020, Springer Science + Business Media

    Prof Sergei Maslov

  8. Entry screening and multi-layer mitigation of COVID-19 cases for a safe university reopening

    Article • September 2020, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  9. Ligation of random oligomers leads to emergence of autocatalytic sequence network

    Article • August 2020, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  10. Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence

    Article • PLoS Computational Biology, August 2020, PLOS

    Prof Sergei Maslov

  11. Persistent heterogeneity not short-term overdispersion determines herd immunity to COVID-19

    Article • July 2020, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  12. Projections and early-warning signals of a second wave of the COVID-19 epidemic in Illinois

    Article • July 2020, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  13. Ecology-guided prediction of cross-feeding interactions in the human gut microbiome

    Article • July 2020, Research Square

    Prof Sergei Maslov

  14. Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  15. Ecology-guided prediction of cross-feeding interactions in the human gut microbiome

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  16. Modeling COVID-19 dynamics in Illinois under non-pharmaceutical interventions

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  17. Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations

    Article • The ISME Journal, May 2020, Springer Science + Business Media

    Prof Sergei Maslov

  18. Window of Opportunity for Mitigation to Prevent Overflow of ICU capacity in Chicago by COVID-19

    Article • March 2020, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  19. Evidence for a multi-level trophic organization of the human gut microbiome

    Article • PLoS Computational Biology, December 2019, PLOS

    Prof Sergei Maslov

  20. Multistability and regime shifts in microbial communities explained by competition for essential nutrients

    Article • eLife, November 2019, eLife

    Prof Sergei Maslov

  21. The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification

    Article • November 2019, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  22. Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

    Article • mSystems, November 2019, ASM Journals

    Prof Sergei Maslov

  23. Evidence for a multi-level trophic organization of the human gut microbiome

    Article • April 2019, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  24. Phages associated with horses provide new insights into the dominance of lateral gene transfer in virulent bacteriophages evolution in natural systems

    Article • February 2019, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  25. Predicting tumor cell line response to drug pairs with deep learning

    Article • BMC Bioinformatics, December 2018, Springer Science + Business Media

    Prof Sergei Maslov

  26. Alternative stable states in a model of microbial community limited by multiple essential nutrients

    Article • October 2018, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  27. Onset of natural selection in populations of autocatalytic heteropolymers

    Article • The Journal of Chemical Physics, October 2018, American Institute of Physics

    Prof Sergei Maslov

  28. Phase transitions in social networks inspired by the Schelling model

    Article • September 2018, American Physical Society (APS)

    Prof Sergei Maslov

  29. Hitchhiking, collapse and contingency in phage infections of migrating bacterial populations

    Article • July 2018, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  30. Multiple stable states in microbial communities explained by the stable marriage problem

    Article • The ISME Journal, July 2018, Springer Science + Business Media

    Prof Sergei Maslov

  31. KBase: The United States Department of Energy Systems Biology Knowledgebase

    Article • Nature Biotechnology, July 2018, Springer Science + Business Media

    Professor Adam P Arkin, Prof Sergei Maslov

  32. Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems

    Article • Physical Review Letters, April 2018, American Physical Society (APS)

    Prof Sergei Maslov

  33. Multiple stable states in microbial communities explained by the stable marriage problem

    Article • December 2017, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  34. Diversity, stability, and reproducibility in stochastically assembled microbial ecosystems

    Article • November 2017, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  35. Onset of natural selection in auto-catalytic heteropolymers

    Article • October 2017, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  36. Severe population collapses and species extinctions in multihost epidemic dynamics

    Article • August 2017, American Physical Society (APS)

    Prof Sergei Maslov

  37. Recombination-Driven Genome Evolution and Stability of Bacterial Species

    Article • Genetics, July 2017, Oxford University Press (OUP)

    Prof Sergei Maslov

  38. Family-specific scaling laws in bacterial genomes

    Article • Nucleic Acids Research, June 2017, Oxford University Press (OUP)

    Prof Sergei Maslov

  39. Severe population collapses and species extinctions in multi-host epidemic dynamics

    Article • April 2017, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  40. Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems

    Article • Scientific Reports, January 2017, Springer Science + Business Media

    Prof Sergei Maslov

  41. Pan- and core- network analysis of co-expression genes in a model plant

    Article • Scientific Reports, December 2016, Springer Science + Business Media

    Prof Sergei Maslov

  42. DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks

    Article • PLoS Computational Biology, October 2016, PLOS

    Prof Sergei Maslov

  43. Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis

    Article • Frontiers in Plant Science, August 2016, Frontiers

    Prof Sergei Maslov

  44. Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis

    Article • The Plant Journal, June 2016, Wiley

    Prof Sergei Maslov

  45. Pan- and core- network analysis of co-expression genes in a model plant

    Article • May 2016, Cold Spring Harbor Laboratory Press

    Prof Sergei Maslov

  46. Diversity Waves in Collapse-Driven Population Dynamics

    Article • PLoS Computational Biology, September 2015, PLOS

    Prof Sergei Maslov

  47. Spontaneous emergence of autocatalytic information-coding polymers

    Article • The Journal of Chemical Physics, July 2015, American Institute of Physics

    Prof Sergei Maslov

  48. Recombinant transfer in the basic genome of Escherichia coli

    Article • Proceedings of the National Academy of Sciences, July 2015, Proceedings of the National Academy of Sciences

    Prof Sergei Maslov

  49. Well-temperate phage: optimal bet-hedging against local environmental collapses

    Article • Scientific Reports, June 2015, Springer Science + Business Media

    Prof Sergei Maslov

  50. Transcriptional Responses to Sucrose Mimic the Plant-Associated Life Style of the Plant Growth Promoting Endophyte Enterobacter sp. 638

    Article • PLoS ONE, January 2015, PLOS

    Prof Sergei Maslov

  51. Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between Arabidopsis and Poplar

    Article • September 2013, ACM (Association for Computing Machinery)

    Prof Sergei Maslov

  52. Evolutionary Capacitance and Control of Protein Stability in Protein-Protein Interaction Networks

    Article • PLoS Computational Biology, April 2013, PLOS

    Prof Sergei Maslov

  53. Universal distribution of component frequencies in biological and technological systems

    Article • Proceedings of the National Academy of Sciences, March 2013, Proceedings of the National Academy of Sciences

    Prof Sergei Maslov

  54. Joint scaling laws in functional and evolutionary categories in prokaryotic genomes

    Article • Nucleic Acids Research, September 2011, Oxford University Press (OUP)

    Prof Sergei Maslov

  55. A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology

    Article • PLoS Computational Biology, May 2011, PLOS

    Prof Sergei Maslov

  56. Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions

    Article • Proceedings of the National Academy of Sciences, February 2011, Proceedings of the National Academy of Sciences

    Prof Sergei Maslov

  57. Understanding the Differences between Genome Sequences of Escherichia coli B Strains REL606 and BL21(DE3) and Comparison of the E. coli B and K-12 Genomes

    Article • Journal of Molecular Biology, December 2009, Elsevier

    Prof Sergei Maslov

  58. Power laws in chess

    Article • Physics, November 2009, American Physical Society (APS)

    Prof Sergei Maslov

  59. Toolbox model of evolution of prokaryotic metabolic networks and their regulation

    Article • Proceedings of the National Academy of Sciences, June 2009, Proceedings of the National Academy of Sciences

    Prof Sergei Maslov

  60. Fluctuations in Mass-Action Equilibrium of Protein Binding Networks

    Article • Physical Review Letters, December 2008, American Physical Society (APS)

    Prof Sergei Maslov

  61. Promise and Pitfalls of Extending Google's PageRank Algorithm to Citation Networks

    Article • Journal of Neuroscience, October 2008, Society for Neuroscience

    Prof Sergei Maslov

  62. Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks

    Article • BMC Bioinformatics, October 2008, Springer Science + Business Media

    Prof Sergei Maslov

  63. Constraints imposed by non-functional protein–protein interactions on gene expression and proteome size

    Article • Molecular Systems Biology, August 2008, EMBO

    Prof Sergei Maslov

  64. Algorithmic Basis for Pathway Visualization

    Article • April 2008, Wiley

    Mr Sergey S Simakov, Prof Sergei Maslov

  65. Propagation of Concentration Perturbations in Equilibrium Protein Binding Networks

    Article • April 2008, Wiley

    Prof Sergei Maslov

  66. Topological and Dynamical Properties of Protein Interaction Networks

    Article • January 2008, Springer Science + Business Media

    Prof Sergei Maslov

  67. Propagation of large concentration changes in reversible protein-binding networks

    Article • Proceedings of the National Academy of Sciences, August 2007, Proceedings of the National Academy of Sciences

    Prof Sergei Maslov

  68. Spreading out of perturbations in reversible reaction networks

    Article • New Journal of Physics, August 2007, Institute of Physics Publishing

    Prof Sergei Maslov

  69. Ranking scientific publications using a model of network traffic

    Article • Journal of Statistical Mechanics Theory and Experiment, June 2007, Institute of Physics Publishing

    Prof Sergei Maslov

  70. UV-Induced Mutagenesis in Escherichia coli SOS Response: A Quantitative Model

    Article • PLoS Computational Biology, March 2007, PLOS

    Prof Sergei Maslov

  71. Better by half

    Article • Nature Physics, January 2007, Springer Science + Business Media

    Prof Sergei Maslov

  72. Exploring an opinion network for taste prediction: An empirical study

    Article • Physica A Statistical Mechanics and its Applications, January 2007, Elsevier

    Prof Sergei Maslov

  73. Finding scientific gems with Google’s PageRank algorithm

    Article • Journal of Informetrics, January 2007, Elsevier

    Prof Sergei Maslov

  74. Optimal ranking in networks with community structure

    Article • Physica A Statistical Mechanics and its Applications, January 2007, Elsevier

    Prof Sergei Maslov

  75. Parameters of proteome evolution from histograms of amino-acid sequence identities of paralogous proteins

    Article • Biology Direct, January 2007, Springer Science + Business Media

    Prof Sergei Maslov

  76. Article • BMC Bioinformatics, January 2006, Springer Science + Business Media

    Prof Sergei Maslov

  77. Computational architecture of the yeast regulatory network

    Article • Physical Biology, November 2005, Institute of Physics Publishing

    Prof Sergei Maslov

  78. Binding properties and evolution of homodimers in protein-protein interaction networks

    Article • Nucleic Acids Research, June 2005, Oxford University Press (OUP)

    Prof Sergei Maslov

  79. UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model

    Article • PLoS Computational Biology, January 2005, PLOS

    Prof Sergei Maslov

  80. Diffusion on complex networks: a way to probe their large-scale topological structures

    Article • Physica A Statistical Mechanics and its Applications, May 2004, Elsevier

    Prof Sergei Maslov

  81. Hierarchy Measures in Complex Networks

    Article • Physical Review Letters, April 2004, American Physical Society (APS)

    Prof Sergei Maslov

  82. The conundrum of stock versus bond prices

    Article • Physica A Statistical Mechanics and its Applications, April 2004, Elsevier

    Prof Sergei Maslov

  83. Detection of topological patterns in complex networks: correlation profile of the internet

    Article • Physica A Statistical Mechanics and its Applications, February 2004, Elsevier

    Prof Sergei Maslov

  84. Detection of Topological Patterns in Protein Networks

    Article • January 2004, Springer Science + Business Media

    Prof Sergei Maslov

  85. Article • BMC Evolutionary Biology, January 2004, Springer Science + Business Media

    Prof Sergei Maslov

  86. DOES THE PRICE MULTIPLIER EFFECT ALSO HOLD FOR STOCKS?

    Article • International Journal of Modern Physics C, December 2003, World Scientific Pub Co Pte Lt

    Prof Sergei Maslov

  87. Modularity and Extreme Edges of the Internet

    Article • Physical Review Letters, April 2003, American Physical Society (APS)

    Prof Sergei Maslov

  88. Protein interaction networks beyond artifacts

    Article • FEBS Letters, September 2002, Wiley

    Prof Sergei Maslov

  89. Specificity and Stability in Topology of Protein Networks

    Article • Science, May 2002, American Association for the Advancement of Science

    Prof Sergei Maslov

  90. Measures of globalization based on cross-correlations of world financial indices

    Article • Physica A Statistical Mechanics and its Applications, December 2001, Elsevier

    Prof Sergei Maslov

  91. Extracting Hidden Information from Knowledge Networks

    Article • Physical Review Letters, November 2001, American Physical Society (APS)

    Prof Sergei Maslov

  92. Price fluctuations from the order book perspective—empirical facts and a simple model

    Article • Physica A Statistical Mechanics and its Applications, October 2001, Elsevier

    Prof Sergei Maslov

  93. Quantum and classical dynamics in mixed-spin one-dimensional antiferromagnets

    Article • Journal of Physics Condensed Matter, June 2001, Institute of Physics Publishing

    Prof Sergei Maslov

  94. Exact solution of a stochastic directed sandpile model

    Article • January 2001, American Physical Society (APS)

    Prof Sergei Maslov

  95. Measures of Globalization Based on Cross-Correlations of World Financial Indices

    Article • SSRN Electronic Journal, January 2001, Elsevier

    Prof Sergei Maslov

  96. Energy Separation of Single-Particle and Continuum States in anS=1/2Weakly Coupled Chains Antiferromagnet

    Article • Physical Review Letters, November 2000, American Physical Society (APS)

    Prof Sergei Maslov

  97. Role of single-ion excitations in the mixed-spin quasi-one-dimensional quantum antiferromagnetNd2BaNiO5

    Article • May 2000, American Physical Society (APS)

    Prof Sergei Maslov

  98. Simple model of a limit order-driven market

    Article • Physica A Statistical Mechanics and its Applications, April 2000, Elsevier

    Prof Sergei Maslov

  99. Simple Model of a Limit Order-Driven Market

    Article • SSRN Electronic Journal, January 2000, Elsevier

    Prof Sergei Maslov

  100. Infrared Studies of the Onset of Conductivity in Ultrathin Pb Films

    Article • Physical Review Letters, December 1999, American Physical Society (APS)

    Prof Sergei Maslov

  101. 1/fNoise in Bak-Tang-Wiesenfeld Models on Narrow Stripes

    Article • Physical Review Letters, September 1999, American Physical Society (APS)

    Prof Sergei Maslov

  102. BaCu2Si2O7: A quasi-one-dimensionalS=1/2antiferromagnetic chain system

    Article • September 1999, American Physical Society (APS)

    Prof Sergei Maslov

  103. Magnetic anisotropy and low-energy spin waves in the Dzyaloshinskii-Moriya spiral magnetBa2CuGe2O7

    Article • May 1999, American Physical Society (APS)

    Prof Sergei Maslov

  104. Probability distribution of drawdowns in risky investments

    Article • Physica A Statistical Mechanics and its Applications, January 1999, Elsevier

    Prof Sergei Maslov

  105. Experimental Evidence for Kaplan–Shekhtman–Entin-Wohlman–Aharony Interactions inBa2CuGe2O7

    Article • Physical Review Letters, December 1998, American Physical Society (APS)

    Prof Sergei Maslov

  106. Critical exponents of the anisotropic Bak-Sneppen model

    Article • December 1998, American Physical Society (APS)

    Prof Sergei Maslov

  107. Magnetic ordering, spin waves, and Haldane-gap excitations in(NdxY1−x)2BaNiO5linear-chain mixed-spin antiferromagnets

    Article • December 1998, American Physical Society (APS)

    Prof Sergei Maslov

  108. Optimal Investment Strategy for Risky Assets

    Article • International Journal of Theoretical and Applied Finance, July 1998, World Scientific Pub Co Pte Lt

    Prof Sergei Maslov

  109. Universal Behavior of One-Dimensional Gapped Antiferromagnets in a Staggered Magnetic Field

    Article • Physical Review Letters, June 1998, American Physical Society (APS)

    Prof Sergei Maslov

  110. Comment on “Role of Intermittency in Urban Development: A Model of Large-Scale City Formation”

    Article • Physical Review Letters, May 1998, American Physical Society (APS)

    Prof Sergei Maslov

  111. Dynamical optimization theory of a diversified portfolio

    Article • Physica A Statistical Mechanics and its Applications, May 1998, Elsevier

    Prof Sergei Maslov

  112. Experimental Measurement of the Staggered Magnetization Curve for a Haldane Spin Chain

    Article • Physical Review Letters, April 1998, American Physical Society (APS)

    Prof Sergei Maslov

  113. Expansion Around the Mean-Field Solution of the Bak-Sneppen Model

    Article • Physical Review Letters, February 1998, American Physical Society (APS)

    Prof Sergei Maslov

  114. Field-induced incommensurate-to-commensurate transition inBa2CuGe2O7

    Article • February 1998, American Physical Society (APS)

    Prof Sergei Maslov

  115. Coexistence of Haldane-gap excitations and long-range antiferromagnetic order in mixed-spin nickelatesR2BaNiO5

    Article • January 1998, American Physical Society (APS)

    Prof Sergei Maslov

  116. Square-lattice spiral magnetBa2CuGe2O7in an in-plane magnetic field

    Article • December 1997, American Physical Society (APS)

    Prof Sergei Maslov

  117. Field-Induced Commensurate-Incommensurate Phase Transition in a Dzyaloshinskii-Moriya Spiral Antiferromagnet

    Article • Physical Review Letters, June 1997, American Physical Society (APS)

    Prof Sergei Maslov

  118. Infinite Series of Exact Equations in the Bak-Sneppen Model of Biological Evolution

    Article • Physical Review Letters, August 1996, American Physical Society (APS)

    Prof Sergei Maslov

  119. Avalanche dynamics in evolution, growth, and depinning models

    Article • January 1996, American Physical Society (APS)

    Prof Sergei Maslov

  120. Self-organized critical directed percolation

    Article • Physica A Statistical Mechanics and its Applications, January 1996, Elsevier

    Prof Sergei Maslov

  121. Exactly Solved Model of Self-Organized Criticality

    Article • Physical Review Letters, August 1995, American Physical Society (APS)

    Prof Sergei Maslov

  122. Laws for Stationary States in Systems with Extremal Dynamics

    Article • Physical Review Letters, May 1995, American Physical Society (APS)

    Prof Sergei Maslov

  123. Time Directed Avalanches in Invasion Models

    Article • Physical Review Letters, January 1995, American Physical Society (APS)

    Prof Sergei Maslov

  124. Avalanches and1fNoise in Evolution and Growth Models

    Article • Physical Review Letters, October 1994, American Physical Society (APS)

    Prof Sergei Maslov

  125. Scaling theory of depinning in the Sneppen model

    Article • August 1994, American Physical Society (APS)

    Prof Sergei Maslov

  126. Field Theory for a Model of Self-Organized Criticality

    Article • EPL (Europhysics Letters), July 1994, Institute of Physics Publishing

    Prof Sergei Maslov

  127. Correlations, mean-field properties, and scaling of a one-dimensional sandpile model

    Article • August 1993, American Physical Society (APS)

    Prof Sergei Maslov

  128. The First Critical Field and Locking-Unlocking Phase Transition in Layered Superconductors

    Article • EPL (Europhysics Letters), March 1991, Institute of Physics Publishing

    Prof Sergei Maslov