What is it about?
We developed a toolkit that allows analysis of clonal populations.
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Why is it important?
Traditional genetic analysis of populations assumes that populations are sexual. Clonal populations violate many of the assumptions of these analyses techniques. The poppr toolbox allows analysis without violating assumptions.
Read the Original
This page is a summary of: Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction, PeerJ, March 2014, PeerJ,
DOI: 10.7717/peerj.281.
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Resources
Poppr resources and tutorials
Poppr is an R package useful in analysis of population genetic data. Poppr introduces core functions for analysis of populations with mixed modes of reproduction typically observed for microbial populations including a blend of asexual and sexual reproduction.
CRAN download
Poppr is open source and major releases are available on CRAN
Development versions are available on GitHub
The development version is available on github.
Population Genetics in R
This primer provides a concise introduction to conducting applied analyses of population genetic data in R, with a special emphasis on non-model populations including clonal or partially clonal organisms.
Contributors
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