All Stories

  1. Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

    Article • eLife, October 2014, eLife

    Dr Tommy Kaplan

  2. TAF7L modulates brown adipose tissue formation

    Article • eLife, May 2014, eLife

    Haiying Zhou, Dr Tommy Kaplan, Dr Ivan Grubisic

  3. Taf7l cooperates with Trf2 to regulate spermiogenesis

    Article • Proceedings of the National Academy of Sciences, September 2013, Proceedings of the National Academy of Sciences

    Dr Tommy Kaplan, Dr Ivan Grubisic

  4. Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression

    Article • PLoS Genetics, September 2013, PLOS

    Dr Tommy Kaplan

  5. A High-Resolution Enhancer Atlas of the Developing Telencephalon

    Article • Cell, February 2013, Elsevier

    Dr Tommy Kaplan

  6. Dual functions of TAF7L in adipocyte differentiation

    Article • eLife, January 2013, eLife

    Haiying Zhou, Dr Tommy Kaplan, Dr Zhengjian Zhang, Dr Ivan Grubisic

  7. Genome-Wide Analysis of Androgen Receptor Targets Reveals COUP-TF1 as a Novel Player in Human Prostate Cancer

    Article • PLoS ONE, October 2012, PLOS

    Dr Tommy Kaplan

  8. Running to stand still

    Article • Nature, April 2012, Springer Science + Business Media

    Dr Tommy Kaplan

  9. Quantitative Models of the Mechanisms that Control Genome-Wide Patterns of Animal Transcription Factor Binding

    Article • January 2012, Elsevier

    Dr Tommy Kaplan

  10. Large-scale discovery of enhancers from human heart tissue

    Article • Nature Genetics, December 2011, Springer Science + Business Media

    Dr Tommy Kaplan

  11. Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition

    Article • PLoS Genetics, October 2011, PLOS

    Dr Tommy Kaplan

  12. High Throughput Determination of TGFβ1/SMAD3 Targets in A549 Lung Epithelial Cells

    Article • PLoS ONE, May 2011, PLOS

    Dr Tommy Kaplan

  13. Correction: A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval

    Article • PLoS Computational Biology, May 2011, PLOS

    Dr Tommy Kaplan

  14. Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development

    Article • PLoS Genetics, February 2011, PLOS

    Dr Tommy Kaplan

  15. Roles for H2A.Z and Its Acetylation in GAL1 Transcription and Gene Induction, but Not GAL1-Transcriptional Memory

    Article • PLoS Biology, June 2010, PLOS

    Dr Tommy Kaplan

  16. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

    Article • Proceedings of the National Academy of Sciences, March 2009, Proceedings of the National Academy of Sciences

    Dr Tommy Kaplan

  17. Cell Cycle– and Chaperone-Mediated Regulation of H3K56ac Incorporation in Yeast

    Article • PLoS Genetics, November 2008, PLOS

    Dr Tommy Kaplan, Paul D. Kaufman

  18. Structure and function of a transcriptional network activated by the MAPK Hog1

    Article • Nature Genetics, October 2008, Springer Science + Business Media

    Dr Tommy Kaplan

  19. A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval

    Article • PLoS Computational Biology, February 2008, PLOS

    Dr Tommy Kaplan

  20. Dynamics of Replication-Independent Histone Turnover in Budding Yeast

    Article • Science, March 2007, American Association for the Advancement of Science

    Dr Tommy Kaplan

  21. Single-Nucleosome Mapping of Histone Modifications in S. cerevisiae

    Article • PLoS Biology, August 2005, PLOS

    Dr Tommy Kaplan

  22. Ab Initio Prediction of Transcription Factor Targets Using Structural Knowledge

    Article • PLoS Computational Biology, June 2005, PLOS

    Dr Tommy Kaplan

  23. Predicting Transcription Factor Binding Sites Using Structural Knowledge

    Article • January 2005, Springer Science + Business Media

    Dr Tommy Kaplan

  24. Modeling dependencies in protein-DNA binding sites

    Article • January 2003, ACM (Association for Computing Machinery)

    Dr Tommy Kaplan

  25. Evaluation of PSI‐BLAST alignment accuracy in comparison to structural alignments

    Article • Protein Science, January 2000, Wiley

    Dr Tommy Kaplan