All Stories

  1. Parallel Analyses by Mass Spectrometry (MS) and Reverse Phase Protein Array (RPPA) Reveal Complementary Proteomic Profiles in Triple‐Negative Breast Cancer (TNBC) Patient Tissues and Cell Cultures

    Article • PROTEOMICS, November 2024, Wiley

    Taobo Hu

  2. Proteomics Landscape of Triple-Negative Apocrine Breast Carcinoma Reveals Molecular Mechanisms of Tumorigenesis and Characteristics of Chemo-insensitivity

    Article • July 2024, Cold Spring Harbor Laboratory Press

    Taobo Hu

  3. Bridging Discoveries and Treatments: The New Landscape of Breast Cancer Research

    Article • Life, June 2024, MDPI AG

    Taobo Hu

  4. Parallel Analyses by Mass Spectrometry (MS) and Reverse Phase Protein Array (RPPA) Reveal Complementary Proteomic Profiles in Triple-Negative Breast Cancer (TNBC) Patient Tissues and Cell Cultures

    Article • June 2024, Cold Spring Harbor Laboratory Press

    Taobo Hu

  5. MSGM: An Advanced Deep Multi-Size Guiding Matching Network for Whole Slide Histopathology Images Addressing Staining Variation and Low Visibility Challenges

    Article • IEEE Journal of Biomedical and Health Informatics, January 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Taobo Hu

  6. Loss of Human Epidermal Receptor 2 Expression in Formalin-Fixed Paraffin-Embedded Breast Cancer Samples and the Rescuing Effect of Enhanced Antigen Retrieval and Signal Amplification

    Article • Life, December 2023, MDPI AG

    Taobo Hu

  7. An orientation-free ring feature descriptor with stain-variability normalization for pathology image matching

    Article • Computers in Biology and Medicine, December 2023, Elsevier

    Taobo Hu

  8. Author Correction: The landscape of viral associations in human cancers

    Article • Nature Genetics, March 2023, Springer Science + Business Media

    Professor Daniel S. Brewer, Taobo Hu, Dr Elizabeth L Christie

  9. Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes

    Article • Nature Biotechnology, March 2023, Springer Science + Business Media

    Taobo Hu

  10. Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

    Article • Nature Genetics, March 2023, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  11. Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers

    Article • Nature Genetics, March 2023, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  12. Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer

    Article • Nature Genetics, March 2023, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  13. Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

    Article • Nature Genetics, March 2023, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  14. Author Correction: Pan-cancer analysis of whole genomes

    Article • Nature, January 2023, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  15. Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

    Article • Nature, January 2023, Springer Science + Business Media

    Taobo Hu

  16. Author Correction: Genomic basis for RNA alterations in cancer

    Article • Nature, January 2023, Springer Science + Business Media

    Taobo Hu

  17. Author Correction: Patterns of somatic structural variation in human cancer genomes

    Article • Nature, January 2023, Springer Science + Business Media

    Taobo Hu

  18. Author Correction: The evolutionary history of 2,658 cancers

    Article • Nature, January 2023, Springer Science + Business Media

    Taobo Hu

  19. Author Correction: The repertoire of mutational signatures in human cancer

    Article • Nature, January 2023, Springer Science + Business Media

    Taobo Hu

  20. Biomarker Alteration after Neoadjuvant Endocrine Therapy or Chemotherapy in Estrogen Receptor-Positive Breast Cancer

    Article • Life, December 2022, MDPI AG

    Taobo Hu

  21. Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  22. Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  23. Author Correction: Divergent mutational processes distinguish hypoxic and normoxic tumours

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  24. Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  25. Author Correction: Inferring structural variant cancer cell fraction

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  26. Author Correction: Integrative pathway enrichment analysis of multivariate omics data

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  27. Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  28. Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  29. Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

    Article • Nature Communications, December 2022, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  30. Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

    Article • Communications Biology, December 2022, Springer Science + Business Media

    Taobo Hu

  31. Adverse Events of PD-1 or PD-L1 Inhibitors in Triple-Negative Breast Cancer: A Systematic Review and Meta-Analysis

    Article • Life, November 2022, MDPI AG

    Taobo Hu

  32. Survival in Breast Cancer Patients with Bone Metastasis: A Multicenter Real-World Study on the Prognostic Impact of Intensive Postoperative Bone Scan after Initial Diagnosis of Breast Cancer (CSBrS-023)

    Article • Cancers, November 2022, MDPI AG

    Taobo Hu

  33. Assessment of accuracy in identifying structural variants using third-generation sequencing for breast cancer in the absence of gold standard

    Article • October 2022, Research Square

    Taobo Hu

  34. AR Expression Correlates with Distinctive Clinicopathological and Genomic Features in Breast Cancer Regardless of ESR1 Expression Status

    Article • International Journal of Molecular Sciences, September 2022, MDPI AG

    Taobo Hu

  35. Germline Variants in 32 Cancer-Related Genes among 700 Chinese Breast Cancer Patients by Next-Generation Sequencing: A Clinic-Based, Observational Study

    Article • International Journal of Molecular Sciences, September 2022, MDPI AG

    Taobo Hu

  36. Two-Dose Vaccination Significantly Prolongs the Duration from Symptom Onset to Death: A Retrospective Study Based on 173,894 SARS-CoV-2 Cases in Khyber Pakhtunkhwa, Pakistan

    Article • International Journal of Environmental Research and Public Health, September 2022, MDPI AG

    Taobo Hu

  37. Tunable mechanical and degradation properties of biodegradable Mg-Y-Zn alloys via Zn content regulation

    Article • Journal of Materials Research and Technology, August 2022, Elsevier

    Taobo Hu

  38. HER2-low-positive features a distinct subtype in estrogen receptor-positive breast cancer associated with endocrine therapy resistance

    Article • July 2022, Research Square

    Taobo Hu

  39. Expression of DNA Helicase Genes Was Correlated with Homologous Recombination Deficiency in Breast Cancer

    Article • Computational and Mathematical Methods in Medicine, July 2022, Hindawi Publishing Corporation

    Taobo Hu

  40. BM-Net: CNN-Based MobileNet-V3 and Bilinear Structure for Breast Cancer Detection in Whole Slide Images

    Article • Bioengineering, June 2022, MDPI AG

    Taobo Hu

  41. Androgen receptor expression associates with distinctive clinicopathological and molecular features in ER-positive and ER-negative breast cancer

    Article • June 2022, Research Square

    Taobo Hu

  42. Intraparenchymal breast leiomyoma and atypical leiomyoma

    Article • BMC Women s Health, April 2022, Springer Science + Business Media

    Taobo Hu

  43. Detection of Structural Variations and Fusion Genes in Breast Cancer Samples Using Third-Generation Sequencing

    Article • Frontiers in Cell and Developmental Biology, April 2022, Frontiers

    Taobo Hu

  44. Gene expression trend changes in breast cancer populations over two decades: insights from The Cancer Genome Atlas database

    Article • Hereditas, March 2022, Springer Science + Business Media

    Taobo Hu

  45. Triple-Negative Apocrine Breast Carcinoma Has Better Prognosis despite Poor Response to Neoadjuvant Chemotherapy

    Article • Journal of Clinical Medicine, March 2022, MDPI AG

    Taobo Hu

  46. The natural history of breast cancer: a chronological analysis of breast cancer progression using data from the SEER database

    Article • Annals of Translational Medicine, March 2022, AME Publishing Company

    Taobo Hu

  47. Triple negative apocrine breast carcinoma has better prognosis despite poor response to neoadjuvant chemotherapy

    Article • January 2022, Research Square

    Taobo Hu

  48. Modeling effective tumor burden of primary lesion and metastatic lymph node in breast cancer patients from the SEER database

    Article • Gland Surgery, January 2022, AME Publishing Company

    Taobo Hu

  49. Gene expression trend changes in breast cancer populations over two decades: insights from The Cancer Genome Atlas database

    Article • December 2021, Research Square

    Taobo Hu

  50. Detection of structural variations and fusion genes in breast cancer samples using third-generation sequencing

    Article • December 2021, Research Square

    Taobo Hu

  51. Identification and Functional Characterization of a Novel Nonsense Variant in ARR3 in a Southern Chinese Family With High Myopia

    Article • Frontiers in Genetics, December 2021, Frontiers

    Taobo Hu

  52. Androgen Receptor Expression Associates With Distinctive Clinicopathological and Molecular Features in ER-Positive and ER-Negative Breast Cancer

    Article • November 2021, Research Square

    Taobo Hu

  53. Gene expression trend changes in breast cancer populations over two decades: insights from The Cancer Genome Atlas database

    Article • October 2021, Research Square

    Taobo Hu

  54. Androgen Receptor Expression Associates With Distinctive Clinicopathological and Molecular Features in ER-Positive and ER-Negative Breast Cancer

    Article • October 2021, Research Square

    Taobo Hu

  55. Detection of structural variations and fusion genes in breast cancer samples using third-generation sequencing

    Article • October 2021, Research Square

    Taobo Hu

  56. Intraparenchymal Breast Leiomyoma and Atypical Leiomyoma

    Article • September 2021, Research Square

    Taobo Hu

  57. Classification of PR-positive and PR-negative subtypes in ER-positive and HER2-negative breast cancers based on pathway scores

    Article • BMC Medical Research Methodology, May 2021, Springer Science + Business Media

    Taobo Hu

  58. Prognosis classification of breast cancer with distant lymph node metastasis IIIc or M1 category

    Article • March 2021, Research Square

    Taobo Hu

  59. Evaluating and Balancing the Risk of Breast Cancer-Specific Death and Other Cause-Specific Death in Elderly Breast Cancer Patients

    Article • Frontiers in Oncology, March 2021, Frontiers

    Taobo Hu

  60. A Histone Acetylation Modulator Gene Signature for Classification and Prognosis of Breast Cancer

    Article • February 2021, MDPI AG

    Taobo Hu

  61. Mechanism and effect of stress granule formation in cancer and its potential roles in breast cancer therapy

    Article • Genes & Diseases, February 2021, Elsevier

    Taobo Hu

  62. Protective effect of goserelin on ovarian reserve during (neo)adjuvant chemotherapy in young breast cancer patients: a prospective cohort study in China

    Article • Human Reproduction, January 2021, Oxford University Press (OUP)

    Taobo Hu

  63. RECQL5 KIX domain splicing isoforms have distinct functions in transcription repression and DNA damage response

    Article • DNA Repair, January 2021, Elsevier

    Taobo Hu

  64. A Machine Learning Approach to Differentiate Two Specific Breast Cancer Subtypes Using Androgen Receptor Pathway Genes

    Article • Technology in Cancer Research & Treatment, January 2021, SAGE Publications

    Taobo Hu

  65. Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

    Article • Nature Communications, November 2020, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  66. Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

    Article • Nature Communications, September 2020, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  67. Sex differences in oncogenic mutational processes

    Article • Nature Communications, August 2020, Springer Science + Business Media

    Taobo Hu, Dr Elizabeth L Christie

  68. Highly Recurrent Copy Number Variations in GABRB2 Associated With Schizophrenia and Premenstrual Dysphoric Disorder

    Article • Frontiers in Psychiatry, June 2020, Frontiers

    Taobo Hu

  69. Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers

    Article • Nature Genetics, April 2020, Springer Science + Business Media

    Taobo Hu

  70. Publisher Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers

    Article • Nature Genetics, February 2020, Springer Science + Business Media

    Taobo Hu

  71. Detecting viruses in tumour tissue to discover links between cancer and infection

    Article • Nature Genetics, February 2020, Springer Science + Business Media

    Professor Daniel S. Brewer, Taobo Hu

  72. Inferring structural variant cancer cell fraction

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  73. Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  74. Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

    Article • Nature, February 2020, Springer Science + Business Media

    Andrés Lanzós, Taobo Hu

  75. Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

    Article • Communications Biology, February 2020, Springer Science + Business Media

    Andrés Lanzós, Dr Elizabeth L Christie, Taobo Hu

  76. A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  77. Combined burden and functional impact tests for cancer driver discovery using DriverPower

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  78. Divergent mutational processes distinguish hypoxic and normoxic tumours

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  79. Genomic footprints of activated telomere maintenance mechanisms in cancer

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  80. High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  81. Integrative pathway enrichment analysis of multivariate omics data

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  82. Pathway and network analysis of more than 2500 whole cancer genomes

    Article • Nature Communications, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  83. Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

    Article • Nature Genetics, February 2020, Springer Science + Business Media

    Taobo Hu

  84. Comprehensive molecular characterization of mitochondrial genomes in human cancers

    Article • Nature Genetics, February 2020, Springer Science + Business Media

    Taobo Hu

  85. Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer

    Article • Nature Genetics, February 2020, Springer Science + Business Media

    Taobo Hu

  86. Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

    Article • Nature Genetics, February 2020, Springer Science + Business Media

    Taobo Hu

  87. Butler enables rapid cloud-based analysis of thousands of human genomes

    Article • Nature Biotechnology, February 2020, Springer Science + Business Media

    Taobo Hu

  88. Genomic basis for RNA alterations in cancer

    Article • Nature, February 2020, Springer Science + Business Media

    Taobo Hu

  89. Patterns of somatic structural variation in human cancer genomes

    Article • Nature, February 2020, Springer Science + Business Media

    Taobo Hu

  90. The repertoire of mutational signatures in human cancer

    Article • Nature, February 2020, Springer Science + Business Media

    Taobo Hu

  91. Pan-cancer analysis of whole genomes

    Article • Nature, February 2020, Springer Science + Business Media

    Taobo Hu, Anna Ehinger, Professor Daniel S. Brewer, Dr Elizabeth L Christie

  92. The evolutionary history of 2,658 cancers

    Article • Nature, February 2020, Springer Science + Business Media

    Dr Elizabeth L Christie, Taobo Hu

  93. Genomic subtyping of liver cancers with prognostic application

    Article • BMC Cancer, January 2020, Springer Science + Business Media

    Taobo Hu

  94. Natural History of Breast Cancer: Reanalyze Nodal Stage and Oestrogen Receptor Status Affecting the Progression of Breast Cancer from SEER Database

    Article • SSRN Electronic Journal, January 2020, Elsevier

    Taobo Hu

  95. Transcriptional regulation of Bcl-2 gene by the PR/SET domain family member PRDM10

    Article • PeerJ, May 2019, PeerJ

    Taobo Hu

  96. Characteristics and Prognostic Factors of Patients With Osteosarcoma Older Than 60 Years From the SEER Database

    Article • Cancer Control, January 2019, SAGE Publications

    Taobo Hu

  97. AluScanCNV2: An R package for copy number variation calling and cancer risk prediction with next-generation sequencing data

    Article • Genes & Diseases, September 2018, Elsevier

    Taobo Hu

  98. Forward and reverse mutations in stages of cancer development

    Article • Human Genomics, August 2018, Springer Science + Business Media

    Taobo Hu

  99. Forward-reverse mutation cycles between stages of cancer development

    Article • October 2017, Cold Spring Harbor Laboratory Press

    Taobo Hu

  100. Coevolution Theory of the Genetic Code at Age Forty: Pathway to Translation and Synthetic Life

    Article • Life, March 2016, MDPI AG

    Taobo Hu

  101. Tripartite genome of all species

    Article • F1000Research, February 2016, Faculty of 1000, Ltd.

    Taobo Hu

  102. Feature co-localization landscape of the human genome

    Article • Scientific Reports, February 2016, Nature

    Taobo Hu

  103. GABRB2 Haplotype Association with Heroin Dependence in Chinese Population

    Article • PLoS ONE, November 2015, PLOS

    Taobo Hu

  104. Massive interstitial copy-neutral loss-of-heterozygosity as evidence for cancer being a disease of the DNA-damage response

    Article • BMC Medical Genomics, July 2015, Springer Science + Business Media

    Taobo Hu

  105. The genetic equidistance result: misreading by the molecular clock and neutral theory and reinterpretation nearly half of a century later

    Article • Science China Life Sciences, March 2013, Springer Science + Business Media

    Taobo Hu