All Stories

  1. New vaccine platform for antiviral protection independent of the classical adaptive immunity

    Article • Proceedings of the National Academy of Sciences, April 2024, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  2. Infection Defects of RNA and DNA Viruses Induced by Antiviral RNA Interference

    Article • Microbiology and Molecular Biology Reviews, June 2023, ASM Journals

    Dr Shou-Wei Ding

  3. Transgene Silencing, RNA Interference, and the Antiviral Defense Mechanism Directed by Small Interfering RNAs

    Article • Phytopathology, April 2023, Scientific Societies

    Dr Shou-Wei Ding

  4. Mammalian viral suppressors of RNA interference

    Article • Trends in Biochemical Sciences, November 2022, Elsevier

    Dr Shou-Wei Ding

  5. Identification of positive and negative regulators of antiviral RNA interference in Arabidopsis thaliana

    Article • Nature Communications, May 2022, Springer Science + Business Media

    Dr Shou-Wei Ding

  6. Mouse circulating extracellular vesicles contain virus‐derived siRNAs active in antiviral immunity

    Article • The EMBO Journal, March 2022, EMBO

    Dr Shou-Wei Ding

  7. Efficient Dicer processing of virus-derived double-stranded RNAs and its modulation by RIG-I-like receptor LGP2

    Article • PLoS Pathogens, August 2021, PLOS

    yang li, Dr Shou-Wei Ding

  8. Editorial overview: Mechanisms in the molecular interactions of plants with viruses and viroids

    Article • Current Opinion in Virology, August 2021, Elsevier

    Dr Shou-Wei Ding

  9. Boosting stem cell immunity to viruses

    Article • Science, July 2021, American Association for the Advancement of Science

    Dr Shou-Wei Ding

  10. Altering Intracellular Localization of the RNA Interference Factors by Influenza A Virus Non-structural Protein 1

    Article • Frontiers in Microbiology, November 2020, Frontiers

    Dr Shou-Wei Ding

  11. Mechanism and Function of Antiviral RNA Interference in Mice

    Article • mBio, August 2020, ASM Journals

    Dr Shou-Wei Ding

  12. DNA Geminivirus Infection Induces an Imprinted E3 Ligase Gene to Epigenetically Activate Viral Gene Transcription

    Article • The Plant Cell, August 2020, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  13. JAcked Responses Go Viral: Hormonal Regulation of Antiviral RNAi

    Article • Cell Host & Microbe, July 2020, Elsevier

    Dr Shou-Wei Ding

  14. A Bunyavirus-Inducible Ubiquitin Ligase Targets RNA Polymerase IV for Degradation during Viral Pathogenesis in Rice

    Article • Molecular Plant, June 2020, Elsevier

    Dr Shou-Wei Ding

  15. lncRNA Sensing of a Viral Suppressor of RNAi Activates Non-canonical Innate Immune Signaling in Drosophila

    Article • Cell Host & Microbe, January 2020, Elsevier

    Dr Shou-Wei Ding

  16. A Sensitized Genetic Screen to Identify Novel Components and Regulators of the Host Antiviral RNA Interference Pathway

    Article • January 2019, Springer Science + Business Media

    Dr Shou-Wei Ding

  17. Small RNA-based antimicrobial immunity

    Article • Nature Reviews Immunology, October 2018, Springer Science + Business Media

    Dr Shou-Wei Ding

  18. Editorial overview: Engineering for viral resistance

    Article • Current Opinion in Virology, October 2018, Elsevier

    Dr Shou-Wei Ding

  19. Antiviral RNA interference in mammals

    Article • Current Opinion in Immunology, October 2018, Elsevier

    Dr Shou-Wei Ding

  20. Templating Antiviral RNAi in Insects

    Article • Cell Host & Microbe, March 2018, Elsevier

    Dr Shou-Wei Ding

  21. Arabidopsis ENOR3 regulates RNAi-mediated antiviral defense

    Article • Journal of Genetics and Genomics, January 2018, Elsevier

    Dr Shou-Wei Ding

  22. Identification of a New Host Factor Required for Antiviral RNAi and Amplification of Viral siRNAs

    Article • PLANT PHYSIOLOGY, November 2017, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  23. Reply to ‘Questioning antiviral RNAi in mammals’

    Article • Nature Microbiology, April 2017, Springer Science + Business Media

    Dr Shou-Wei Ding

  24. Caenorhabditis elegans RIG-I Homolog Mediates Antiviral RNA Interference Downstream of Dicer-Dependent Biogenesis of Viral Small Interfering RNAs

    Article • mBio, March 2017, ASM Journals

    Dr Shou-Wei Ding

  25. Differential expression of cucumber RNA‐dependent RNA polymerase 1 genes during antiviral defence and resistance

    Article • Molecular Plant Pathology, February 2017, Wiley

    Dr Shou-Wei Ding

  26. Lipid flippases promote antiviral silencing and the biogenesis of viral and host siRNAs in Arabidopsis

    Article • Proceedings of the National Academy of Sciences, January 2017, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  27. Viral effector protein manipulates host hormone signaling to attract insect vectors

    Article • Cell Research, January 2017, Springer Science + Business Media

    Dr Shou-Wei Ding

  28. Induction and suppression of antiviral RNA interference by influenza A virus in mammalian cells

    Article • Nature Microbiology, December 2016, Springer Science + Business Media

    Dr Shou-Wei Ding

  29. Genome-wide identification of endogenous RNA-directed DNA methylation loci associated with abundant 21-nucleotide siRNAs in Arabidopsis

    Article • Scientific Reports, October 2016, Springer Science + Business Media

    Dr Shou-Wei Ding

  30. Cotton plants export microRNAs to inhibit virulence gene expression in a fungal pathogen

    Article • Nature Plants, September 2016, Springer Science + Business Media

    Dr Shou-Wei Ding

  31. Retraction: ‘Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana’

    Article • The EMBO Journal, August 2015, Springer Science + Business Media

    Dr Shou-Wei Ding

  32. Identification of Viruses and Viroids by Next-Generation Sequencing and Homology-Dependent and Homology-Independent Algorithms

    Article • Annual Review of Phytopathology, August 2015, Annual Reviews

    Dr Shou-Wei Ding

  33. RIG-I-dependent antiviral immunity is effective against an RNA virus encoding a potent suppressor of RNAi

    Article • Biochemical and Biophysical Research Communications, May 2015, Elsevier

    Dr Shou-Wei Ding

  34. Discovery of Replicating Circular RNAs by RNA-Seq and Computational Algorithms

    Article • PLoS Pathogens, December 2014, PLOS

    Dr Shou-Wei Ding

  35. Antiviral RNA Silencing in Mammals: No News Is Not Good News

    Article • Cell Reports, November 2014, Elsevier

    Dr Shou-Wei Ding

  36. Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis

    Article • Proceedings of the National Academy of Sciences, September 2014, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  37. Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

    Article • BMC Bioinformatics, June 2014, Springer Science + Business Media

    Dr Shou-Wei Ding

  38. Intestinal Epithelial Barrier Disruption through Altered Mucosal MicroRNA Expression in Human Immunodeficiency Virus and Simian Immunodeficiency Virus Infections

    Article • Journal of Virology, March 2014, ASM Journals

    Dr Shou-Wei Ding

  39. Antiviral RNA Interference in Mammalian Cells

    Article • Science, October 2013, American Association for the Advancement of Science

    Dr Shou-Wei Ding

  40. RNA Interference Functions as an Antiviral Immunity Mechanism in Mammals

    Article • Science, October 2013, American Association for the Advancement of Science

    Dr Shou-Wei Ding

  41. Homologous RIG-I–like helicase proteins direct RNAi-mediated antiviral immunity in C. elegans by distinct mechanisms

    Article • Proceedings of the National Academy of Sciences, September 2013, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  42. Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm

    Article • Proceedings of the National Academy of Sciences, February 2012, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  43. Suppression of Arabidopsis ARGONAUTE1-Mediated Slicing, Transgene-Induced RNA Silencing, and DNA Methylation by Distinct Domains of the Cucumber mosaic virus 2b Protein

    Article • The Plant Cell, January 2012, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  44. Virus-derived siRNAs and piRNAs in immunity and pathogenesis

    Article • Current Opinion in Virology, December 2011, Elsevier

    Dr Shou-Wei Ding

  45. RNA-Based Immunity Terminates Viral Infection in Adult Drosophila in the Absence of Viral Suppression of RNA Interference: Characterization of Viral Small Interfering RNA Populations in Wild-Type and Mutant Flies

    Article • Journal of Virology, September 2011, ASM Journals

    Dr Shou-Wei Ding

  46. The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes inArabidopsis thaliana   

    Article • The Plant Cell, April 2011, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  47. RNA-based antiviral immunity

    Article • Nature Reviews Immunology, August 2010, Springer Science + Business Media

    Dr Shou-Wei Ding

  48. Viral Suppressors of RNA-Based Viral Immunity: Host Targets

    Article • Cell Host & Microbe, July 2010, Elsevier

    Dr Shou-Wei Ding

  49. siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis

    Article • Nucleic Acids Research, May 2010, Oxford University Press (OUP)

    Xuemei Chen, Dr Shou-Wei Ding

  50. Six RNA Viruses and Forty-One Hosts: Viral Small RNAs and Modulation of Small RNA Repertoires in Vertebrate and Invertebrate Systems

    Article • PLoS Pathogens, February 2010, PLOS

    Dr Shou-Wei Ding

  51. Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs

    Article • Proceedings of the National Academy of Sciences, January 2010, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  52. RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana

    Article • Proceedings of the National Academy of Sciences, December 2009, Proceedings of the National Academy of Sciences

    Xuemei Chen, Dr Shou-Wei Ding

  53. Possible new RNA intermediate in RNA silencing

    Article • Nature Chemical Biology, May 2009, Springer Science + Business Media

    Dr Shou-Wei Ding

  54. An RIG-I-Like RNA Helicase Mediates Antiviral RNAi Downstream of Viral siRNA Biogenesis in Caenorhabditis elegans

    Article • PLoS Pathogens, February 2009, PLOS

    Dr Shou-Wei Ding

  55. RNA‐based viral immunity initiated by the Dicer family of host immune receptors

    Article • Immunological Reviews, December 2008, Wiley

    Dr Shou-Wei Ding

  56. Mechanism of Induction and Suppression of Antiviral Immunity Directed by Virus-Derived Small RNAs in Drosophila

    Article • Cell Host & Microbe, October 2008, Elsevier

    Dr Shou-Wei Ding

  57. Hibiscus chlorotic ringspot virus coat protein inhibits trans-acting small interfering RNA biogenesis in Arabidopsis

    Article • Journal of General Virology, September 2008, Society for General Microbiology

    Dr Shou-Wei Ding

  58. Direct and Indirect Roles of Viral Suppressors of RNA Silencing in Pathogenesis

    Article • Annual Review of Phytopathology, September 2008, Annual Reviews

    Dr Shou-Wei Ding

  59. Antiviral Immunity Directed by Small RNAs

    Article • Cell, August 2007, Elsevier

    Dr Shou-Wei Ding

  60. Suppression of Antiviral Silencing by Cucumber Mosaic Virus 2b Protein in Arabidopsis Is Associated with Drastically Reduced Accumulation of Three Classes of Viral Small Interfering RNAs

    Article • The Plant Cell, June 2007, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  61. Virus Counterdefense: Diverse Strategies for Evading the RNA-Silencing Immunity

    Article • Annual Review of Microbiology, October 2006, Annual Reviews

    Dr Shou-Wei Ding

  62. Chimeric cDNA Sequences from Citrus tristeza virus Confer RNA Silencing-Mediated Resistance in Transgenic Nicotiana benthamiana Plants

    Article • Phytopathology, August 2006, Scientific Societies

    Dr Shou-Wei Ding

  63. RNA Interference Directs Innate Immunity Against Viruses in Adult Drosophila

    Article • Science, April 2006, American Association for the Advancement of Science

    Dr Shou-Wei Ding

  64. Antiviral silencing in animals

    Article • FEBS Letters, August 2005, Wiley

    Dr Shou-Wei Ding

  65. Animal virus replication and RNAi-mediated antiviral silencing in Caenorhabditis elegans

    Article • Nature, August 2005, Springer Science + Business Media

    Dr Shou-Wei Ding

  66. Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome

    Article • Proceedings of the National Academy of Sciences, October 2004, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  67. RNA silencing: a conserved antiviral immunity of plants and animals

    Article • Virus Research, June 2004, Elsevier

    Dr Shou-Wei Ding

  68. Viral Virulence Protein Suppresses RNA Silencing–Mediated Defense but Upregulates the Role of MicroRNA in Host Gene Expression[W]

    Article • The Plant Cell, May 2004, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  69. RNA silencing as related to viroid induced symptom expression

    Article • Archives of Virology, February 2004, Springer Science + Business Media

    Dr Shou-Wei Ding

  70. Interferon antagonist proteins of influenza and vaccinia viruses are suppressors of RNA silencing

    Article • Proceedings of the National Academy of Sciences, January 2004, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  71. Identification and molecular characterization of a naturally occurring RNA virus mutant defective in the initiation of host recovery

    Article • Virology, December 2003, Elsevier

    Dr Shou-Wei Ding

  72. The p23 Protein of Hibiscus Chlorotic Ringspot Virus Is Indispensable for Host-Specific Replication

    Article • Journal of Virology, December 2002, ASM Journals

    Dr Shou-Wei Ding

  73. Induction and Suppression of RNA Silencing by an Animal Virus

    Article • Science, May 2002, American Association for the Advancement of Science

    Dr Shou-Wei Ding

  74. RNA Silencing and the Mobile Silencing Signal

    Article • The Plant Cell, May 2002, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  75. A viral protein inhibits the long range signaling activity of the gene silencing signal

    Article • The EMBO Journal, February 2002, Springer Science + Business Media

    Dr Shou-Wei Ding

  76. The Suppressor of Transgene RNA Silencing Encoded by Cucumber mosaic virus Interferes with Salicylic Acid-Mediated Virus Resistance

    Article • Molecular Plant-Microbe Interactions, June 2001, Scientific Societies

    Dr Shou-Wei Ding

  77. Viral suppressors of RNA silencing

    Article • Current Opinion in Biotechnology, April 2001, Elsevier

    Dr Shou-Wei Ding

  78. Suppression of post-transcriptional gene silencing by a plant viral protein localized in the nucleus

    Article • The EMBO Journal, April 2000, Springer Science + Business Media

    Dr Shou-Wei Ding

  79. RNA silencing

    Article • Current Opinion in Biotechnology, April 2000, Elsevier

    Dr Shou-Wei Ding

  80. Strong host resistance targeted against a viral suppressor of the plant gene silencing defence mechanism

    Article • The EMBO Journal, May 1999, Springer Science + Business Media

    Dr Shou-Wei Ding

  81. Ilarviruses Encode a Cucumovirus-Like 2b Gene That Is Absent in Other Genera within the Bromoviridae

    Article • Journal of Virology, August 1998, ASM Journals

    Dr Shou-Wei Ding

  82. Plasmid vector for cloning infectious cDNAs from plant RNA viruses: high infectivity of cDNA clones of tomato aspermy cucumovirus.

    Article • Journal of General Virology, May 1997, Society for General Microbiology

    Dr Shou-Wei Ding

  83. In vivo expression of an overlapping gene encoded by the cucumoviruses.

    Article • Journal of General Virology, January 1997, Society for General Microbiology

    Dr Shou-Wei Ding

  84. An interspecies hybrid RNA virus is significantly more virulent than either parental virus.

    Article • Proceedings of the National Academy of Sciences, July 1996, Proceedings of the National Academy of Sciences

    Dr Shou-Wei Ding

  85. A novel naturally occurring hybrid gene encoded by a plant RNA virus facilitates long distance virus movement.

    Article • The EMBO Journal, December 1995, Springer Science + Business Media

    Dr Shou-Wei Ding

  86. Efficient infection from cDNA clones of cucumber mosaic cucumovirus RNAs in a new plasmid vector

    Article • Journal of General Virology, February 1995, Society for General Microbiology

    Dr Shou-Wei Ding

  87. New Overlapping Gene Encoded by the Cucumber Mosaic Virus Genome

    Article • Virology, February 1994, Elsevier

    Dr Shou-Wei Ding

  88. Infectious eggplant mosaic tymovirus and ononis yellow mosaic tymovirus from cloned cDNA

    Article • Archives of Virology, March 1993, Springer Science + Business Media

    Dr Shou-Wei Ding

  89. RNA hybrid mismatch polymorphisms in Australian populations of turnip yellow mosaic tymovirus

    Article • Archives of Virology, March 1993, Springer Science + Business Media

    Dr Shou-Wei Ding

  90. Nucleotide sequence of the virion protein gene of belladonna mottle tymovirus

    Article • Nucleic Acids Research, January 1990, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  91. Nucleotide sequence of the virion protein gene of cacao yellow mosaic tymovirus

    Article • Nucleic Acids Research, January 1990, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  92. The tymobox, a sequence shared by most tymoviruses: its use in molecular studies of tymoviruses

    Article • Nucleic Acids Research, January 1990, Oxford University Press (OUP)

    Dr Shou-Wei Ding

  93. Nucleotide sequence of the ononis yellow mosaic tymovirus genome

    Article • Virology, October 1989, Elsevier

    Dr Shou-Wei Ding