All Stories

  1. Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

    Article • PLoS ONE, September 2016, PLOS

    Mr Shaun Dunn Jackman

  2. Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation

    Article • Genome Biology and Evolution, December 2015, Oxford University Press (OUP)

    Mr Shaun Dunn Jackman

  3. Sealer: a scalable gap-closing application for finishing draft genomes

    Article • BMC Bioinformatics, July 2015, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  4. Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

    Article • The Plant Journal, June 2015, Wiley

    Mr Shaun Dunn Jackman

  5. UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation

    Article • PLoS ONE, May 2015, PLOS

    Mr Shaun Dunn Jackman

  6. On the Representation of De Bruijn Graphs

    Article • Journal of Computational Biology, May 2015, Mary Ann Liebert Inc

    Mr Shaun Dunn Jackman

  7. DIDA: Distributed Indexing Dispatched Alignment

    Article • PLoS ONE, April 2015, PLOS

    Mr Shaun Dunn Jackman

  8. Spaced Seed Data Structures forDe NovoAssembly

    Article • International Journal of Genomics, January 2015, Hindawi Publishing Corporation

    Mr Shaun Dunn Jackman

  9. Konnector v2.0: pseudo-long reads from paired-end sequencing data

    Article • BMC Medical Genomics, January 2015, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  10. Spaced seed data structures

    Article • November 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Mr Shaun Dunn Jackman

  11. Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph

    Article • November 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Mr Shaun Dunn Jackman

  12. KLEAT: CLEAVAGE SITE ANALYSIS OF TRANSCRIPTOMES

    Article • November 2014, World Scientific Pub Co Pte Lt

    Mr Shaun Dunn Jackman

  13. BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters

    Article • Bioinformatics, August 2014, Oxford University Press (OUP)

    Mr Shaun Dunn Jackman

  14. UniqTag: Content-derived unique and stable identifiers for gene annotation

    Article • August 2014, Cold Spring Harbor Laboratory Press

    Mr Shaun Dunn Jackman

  15. On the Representation of de Bruijn Graphs

    Article • January 2014, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  16. Whole Genome Duplication and Enrichment of Metal Cation Transporters Revealed by De Novo Genome Sequencing of Extremely Halotolerant Black Yeast Hortaea werneckii

    Article • PLoS ONE, August 2013, PLOS

    Professor Corey Nislow, Mr Shaun Dunn Jackman

  17. Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

    Article • BMC Genomics, August 2013, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  18. The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera

    Article • BMC Genomics, June 2013, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  19. Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

    Article • Bioinformatics, May 2013, Oxford University Press (OUP)

    Mr Shaun Dunn Jackman

  20. Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

    Article • March 2013, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  21. The genetic landscape of high-risk neuroblastoma

    Article • Nature Genetics, January 2013, Nature

    Mr Shaun Dunn Jackman

  22. Subgroup-specific structural variation across 1,000 medulloblastoma genomes

    Article • Nature, July 2012, Nature

    Mr Shaun Dunn Jackman

  23. Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers

    Article • The Journal of Pathology, November 2011, Wiley

    Mr Shaun Dunn Jackman, Dr Stephen Yip

  24. Genome Sequence of Mycoplasma capricolum subsp. capripneumoniae Strain M1601

    Article • Journal of Bacteriology, October 2011, ASM Journals

    Mr Shaun Dunn Jackman

  25. Assemblathon 1: A competitive assessment of de novo short read assembly methods

    Article • Genome Research, September 2011, Cold Spring Harbor Laboratory Press

    Dr Richard M Leggett, Mr Shaun Dunn Jackman, Dr Keith R Bradnam

  26. Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees

    Article • BMC Genomics, September 2011, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  27. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma

    Article • Nature, July 2011, Nature

    Mr Shaun Dunn Jackman

  28. De novo assembly and analysis of RNA-seq data

    Article • Nature Methods, October 2010, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  29. Assembling genomes using short-read sequencing technology

    Article • Genome Biology, January 2010, Springer Science + Business Media

    Mr Shaun Dunn Jackman

  30. ABySS-Explorer: Visualizing Genome Sequence Assemblies

    Article • IEEE Transactions on Visualization and Computer Graphics, November 2009, Institute of Electrical & Electronics Engineers (IEEE)

    Mr Shaun Dunn Jackman

  31. De novo transcriptome assembly with ABySS

    Article • Bioinformatics, June 2009, Oxford University Press (OUP)

    Mr Shaun Dunn Jackman

  32. ABySS: A parallel assembler for short read sequence data

    Article • Genome Research, February 2009, Cold Spring Harbor Laboratory Press

    Mr Shaun Dunn Jackman