All Stories

  1. Dictionary learning for integrative, multimodal and scalable single-cell analysis

    Article • Nature Biotechnology, May 2023, Springer Science + Business Media

    Saket Choudhary

  2. CPA-Perturb-seq: Multiplexed single-cell characterization of alternative polyadenylation regulators

    Article • February 2023, Cold Spring Harbor Laboratory Press

    Saket Choudhary

  3. Dictionary learning for integrative, multimodal, and scalable single-cell analysis

    Article • February 2022, Cold Spring Harbor Laboratory Press

    Saket Choudhary

  4. Comparison and evaluation of statistical error models for scRNA-seq

    Article • January 2022, Springer Science + Business Media

    Saket Choudhary

  5. Comparison and evaluation of statistical error models for scRNA-seq

    Article • July 2021, Cold Spring Harbor Laboratory Press

    Saket Choudhary

  6. Musashi1 Contribution to Glioblastoma Development via Regulation of a Network of DNA Replication, Cell Cycle and Division Genes

    Article • Cancers, March 2021, MDPI AG

    Saket Choudhary

  7. Erratum to: Global translational landscape of the Candida albicans morphological transition

    Article • G3 Genes Genomes Genetics, March 2021, Oxford University Press (OUP)

    Saket Choudhary

  8. Global translational landscape of the Candida albicans morphological transition

    Article • G3 Genes Genomes Genetics, December 2020, Oxford University Press (OUP)

    Saket Choudhary

  9. A Protein Microarray-Based Investigation of Cerebrospinal Fluid Reveals Distinct Autoantibody Signature in Low and High-Grade Gliomas

    Article • Frontiers in Oncology, December 2020, Frontiers

    Saket Choudhary

  10. Genomic analyses of early responses to radiation in glioblastoma reveal new alterations at transcription, splicing, and translation levels

    Article • Scientific Reports, June 2020, Springer Science + Business Media

    Saket Choudhary

  11. Integrated analyses of early responses to radiation in glioblastoma identify new alterations in RNA processing and candidate target genes to improve treatment outcomes

    Article • December 2019, Cold Spring Harbor Laboratory Press

    Saket Choudhary

  12. Accurate detection of short and long active ORFs using Ribo-seq data

    Article • Bioinformatics, November 2019, Oxford University Press (OUP)

    Saket Choudhary

  13. Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin

    Article • eLife, August 2019, eLife

    Saket Choudhary

  14. pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive

    Article • F1000Research, April 2019, Faculty of 1000, Ltd.

    Saket Choudhary

  15. pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive

    Article • March 2019, Cold Spring Harbor Laboratory Press

    Saket Choudhary

  16. Bioconda: sustainable and comprehensive software distribution for the life sciences

    Article • Nature Chemical Biology, July 2018, Springer Science + Business Media

    Dr. Yasset Perez-Riverol, Saket Choudhary

  17. Evaluation of autoantibody signatures in meningioma patients using human proteome arrays

    Article • Oncotarget, April 2017, Impact Journals, LLC

    Saket Choudhary

  18. Reaction Decoder Tool (RDT): extracting features from chemical reactions

    Article • Bioinformatics, February 2016, Oxford University Press (OUP)

    Saket Choudhary

  19. BioJS-HGV Viewer: Genetic Variation Visualizer

    Article • November 2015, Cold Spring Harbor Laboratory Press

    Saket Choudhary

  20. Autoantibody Profiling of Glioma Serum Samples to Identify Biomarkers Using Human Proteome Arrays

    Article • Scientific Reports, September 2015, Springer Science + Business Media

    Saket Choudhary

  21. Anatomy of BioJS, an open source community for the life sciences

    Article • eLife, July 2015, eLife

    Mr Bruno Vieira, Björn Grüning, Saket Choudhary

  22. GalDrive: Pipeline for comparative identification of driver mutations using the Galaxy framework

    Article • October 2014, Cold Spring Harbor Laboratory Press

    Saket Choudhary

  23. Oscad: An open source EDA tool for circuit design, simulation, analysis and PCB design

    Article • December 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Saket Choudhary

  24. Scilab on Cloud and Textbook Companion Project: A Web 2.0 Service for Open Source Education

    Article • December 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Saket Choudhary

  25. Abstract

    Article • eLife

    Saket Choudhary