All Stories

  1. Absence of Selection for Quantum Coherence in the Fenna–Matthews–Olson Complex: A Combined Evolutionary and Excitonic Study

    Article • ACS Central Science, August 2017, American Chemical Society (ACS)

    Romain A Studer

  2. Evolution of protein phosphorylation across 18 fungal species

    Article • Science, October 2016, American Association for the Advancement of Science

    Romain A Studer

  3. Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering

    Article • Royal Society Open Science, March 2016, Royal Society Publishing

    Dr Michael Schubert, Romain A Studer

  4. Origin of the response to adrenal and sex steroids: Roles of promiscuity and co-evolution of enzymes and steroid receptors

    Article • The Journal of Steroid Biochemistry and Molecular Biology, July 2015, Elsevier

    Romain A Studer

  5. Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life

    Article • PLoS ONE, June 2015, PLOS

    Romain A Studer, Dr. Huub JM Op den Camp

  6. WHAT CAN COMPARATIVE GENOMICS REVEAL ABOUT THE MECHANISMS OF PROTEIN FUNCTION EVOLUTION?

    Article • November 2014, World Scientific Pub Co Pte Lt

    Romain A Studer

  7. CATH: comprehensive structural and functional annotations for genome sequences

    Article • Nucleic Acids Research, October 2014, Oxford University Press (OUP)

    Romain A Studer

  8. Understanding the functional difference between growth arrest-specific protein 6 and protein S: an evolutionary approach

    Article • Open Biology, October 2014, Royal Society Publishing

    Dr René Mulder, Romain A Studer, Professor Fred R. Opperdoes

  9. Positive Selection during the Evolution of the Blood Coagulation Factors in the Context of Their Disease-Causing Mutations

    Article • Molecular Biology and Evolution, August 2014, Oxford University Press (OUP)

    Romain A Studer

  10. Stability-activity tradeoffs constrain the adaptive evolution of RubisCO

    Article • Proceedings of the National Academy of Sciences, January 2014, Proceedings of the National Academy of Sciences

    Romain A Studer

  11. Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

    Article • Nucleic Acids Research, November 2013, Oxford University Press (OUP)

    Romain A Studer

  12. Selectome update: quality control and computational improvements to a database of positive selection

    Article • Nucleic Acids Research, November 2013, Oxford University Press (OUP)

    Romain A Studer

  13. Vitellogenin Underwent Subfunctionalization to Acquire Caste and Behavioral Specific Expression in the Harvester Ant Pogonomyrmex barbatus

    Article • PLoS Genetics, August 2013, PLOS

    Dr Yannick Wurm, Romain A Studer

  14. Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes

    Article • Biochemical Journal, February 2013, Portland Press Ltd.

    Romain A Studer

  15. New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

    Article • Nucleic Acids Research, November 2012, Oxford University Press (OUP)

    Romain A Studer

  16. Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs

    Article • PLoS Computational Biology, May 2012, PLOS

    Romain A Studer, Dr Christophe Dessimoz

  17. Evolution of the epithelial sodium channel and the sodium pump as limiting factors of aldosterone action on sodium transport

    Article • Physiological Genomics, May 2011, American Physiological Society

    Romain A Studer

  18. Large-Scale Analysis of Orthologs and Paralogs under Covarion-Like and Constant-but-Different Models of Amino Acid Evolution

    Article • Molecular Biology and Evolution, June 2010, Oxford University Press (OUP)

    Romain A Studer

  19. Adaptive Divergence of Ancient Gene Duplicates in the Avian MHC Class II  

    Article • Molecular Biology and Evolution, May 2010, Oxford University Press (OUP)

    Romain A Studer

  20. Evidence for an episodic model of protein sequence evolution

    Article • Biochemical Society Transactions, August 2009, Portland Press Ltd.

    Romain A Studer

  21. How confident can we be that orthologs are similar, but paralogs differ?

    Article • Trends in Genetics, May 2009, Elsevier

    Romain A Studer

  22. Structural and Evolutionary Innovation of the Heterodimerization Interface between USP and the Ecdysone Receptor ECR in Insects

    Article • Molecular Biology and Evolution, January 2009, Oxford University Press (OUP)

    Romain A Studer

  23. Large-Scale Analyses of Positive Selection Using Codon Models

    Article • January 2009, Springer Science + Business Media

    Romain A Studer

  24. Selectome: a database of positive selection

    Article • Nucleic Acids Research, January 2009, Oxford University Press (OUP)

    Romain A Studer

  25. Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

    Article • Genome Research, July 2008, Cold Spring Harbor Laboratory Press

    Romain A Studer