All Stories

  1. Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

    Article • F1000Research, January 2020, Faculty of 1000, Ltd.

    Dr Philip A Ewels, PhD Maxime Ulysse Garcia, Malin Larsson, Björn Nystedt

  2. Cluster Flow: A user-friendly bioinformatics workflow tool

    Article • F1000Research, May 2017, Faculty of 1000, Ltd.

    Dr Philip A Ewels

  3. Cluster Flow: A user-friendly bioinformatics workflow tool

    Article • F1000Research, December 2016, Faculty of 1000, Ltd.

    Dr Philip A Ewels, Dr Felix Krueger

  4. Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women

    Article • Archives of Toxicology, November 2016, Springer Science + Business Media

    Dr Philip A Ewels

  5. MultiQC: Summarize analysis results for multiple tools and samples in a single report

    Article • Bioinformatics, June 2016, Oxford University Press (OUP)

    Dr Philip A Ewels

  6. Single base resolution analysis of 5-hydroxymethylcytosine in 188 human genes: implications for hepatic gene expression

    Article • Nucleic Acids Research, April 2016, Oxford University Press (OUP)

    Dr Philip A Ewels

  7. A Complete Overhaul of the Electron Energy-Loss Spectroscopy and X-Ray Absorption Spectroscopy Database: eelsdb.eu

    Article • Microscopy and Microanalysis, February 2016, Cambridge University Press

    Dr Philip A Ewels

  8. HiCUP: pipeline for mapping and processing Hi-C data

    Article • F1000Research, November 2015, Faculty of 1000, Ltd.

    Dr Philip A Ewels, Steven Wingett

  9. Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies

    Article • Proceedings of the National Academy of Sciences, October 2015, Proceedings of the National Academy of Sciences

    Dr Philip A Ewels

  10. Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C

    Article • Nature Genetics, May 2015, Nature

    Dr Philip A Ewels

  11. Global Reorganization of the Nuclear Landscape in Senescent Cells

    Article • Cell Reports, February 2015, Elsevier

    Dr Philip A Ewels

  12. Understanding functional miRNA–target interactions in vivo by site-specific genome engineering

    Article • Nature Communications, August 2014, Nature

    Dr Philip A Ewels

  13. Meet the neighbours: tools to dissect nuclear structure and function

    Article • Briefings in Functional Genomics, January 2011, Oxford University Press (OUP)

    Dr Philip A Ewels

  14. Large Scale Association Analysis of Novel Genetic Loci for Coronary Artery Disease

    Article • Arteriosclerosis Thrombosis and Vascular Biology, January 2009, Wolters Kluwer Health

    Dr Philip A Ewels

  15. Sorting nexin-1 defines an early phase of Salmonella-containing vacuole-remodeling during Salmonella infection

    Article • Journal of Cell Science, May 2008, The Company of Biologists

    Dr Philip A Ewels

  16. Genetic determinants of ulcerative colitis include the ECM1 locus and five loci implicated in Crohn's disease

    Article • Nature Genetics, April 2008, Nature

    Dr Philip A Ewels

  17. High-Throughput Genotyping of Salmonella enterica Serovar Typhi Allowing Geographical Assignment of Haplotypes and Pathotypes within an Urban District of Jakarta, Indonesia

    Article • Journal of Clinical Microbiology, March 2008, ASM Journals

    Dr Philip A Ewels