All Stories

  1. Cross-tissue isoform switches by human transcription factors suggest a widespread regulatory mechanism

    Article • November 2024, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  2. The complete mitogenome of an unidentified Oikopleura species

    Article • F1000Research, November 2024, Faculty of 1000, Ltd.

    Professor Nicholas Luscombe

  3. Integrative analysis of higher-order transcriptome organisation and RNA condensation principles

    Article • October 2024, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  4. Less, but more: new insights from appendicularians on chordateFgfevolution and the divergence of tunicate lifestyles

    Article • August 2024, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  5. Tracing Homopolymers in Oikopleura dioica's Mitogenome

    Article • Genome Biology and Evolution, August 2024, Oxford University Press (OUP)

    Professor Nicholas Luscombe

  6. The complete mitogenome of an unidentifiedOikopleuraspecies

    Article • July 2024, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  7. Tracing Homopolymers inOikopleura dioica’s mitogenome

    Article • May 2024, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  8. A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3′ UTR structure to RNA metabolism

    Article • Nucleic Acids Research, April 2023, Oxford University Press (OUP)

    Professor Nicholas Luscombe

  9. clipplotr - a comparative visualisation and analysis tool for CLIP data

    Article • RNA, March 2023, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  10. A computationally-enhanced hiCLIP atlas reveals Staufen1 RNA binding features and links 3’ UTR structure to RNA metabolism

    Article • June 2022, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  11. A single-cell atlas of bobtail squid visual and nervous system highlights molecular principles of convergent evolution

    Article • May 2022, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  12. Automated phenol-chloroform extraction of high molecular weight genomic DNA for use in long-read single-molecule sequencing

    Article • F1000Research, February 2022, Faculty of 1000, Ltd.

    Professor Nicholas Luscombe

  13. Annelid functional genomics reveal the origins of bilaterian life cycles

    Article • February 2022, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  14. Automated phenol-chloroform extraction of high molecular weight genomic DNA for use in long-read single-molecule sequencing

    Article • January 2022, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  15. Development of the Research Data Archive at OIST

    Article • January 2022, Springer Science + Business Media

    Professor Nicholas Luscombe

  16. Chromatin-contact atlas reveals disorder-mediated protein interactions and moonlighting chromatin-associated RBPs

    Article • Nucleic Acids Research, December 2021, Oxford University Press (OUP)

    Professor Nicholas Luscombe

  17. clipplotr - a comparative visualisation and analysis tool for CLIP data

    Article • September 2021, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  18. Suppressed eusocial reproduction supports evolutionary convergence over co-option

    Article • July 2021, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  19. Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer

    Article • Wellcome Open Research, June 2021, Faculty of 1000, Ltd.

    Professor Nicholas Luscombe

  20. ChromWave: Deciphering the DNA-encoded competition between transcription factors and nucleosomes with deep neural networks

    Article • March 2021, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  21. psiCLIP reveals dynamic RNA binding by DEAH-box helicases before and after exon ligation

    Article • Nature Communications, March 2021, Springer Science + Business Media

    Professor Nicholas Luscombe

  22. H3S28P Antibody Staining of Okinawan Oikopleura dioica Suggests the Presence of Three Chromosomes

    Article • F1000Research, March 2021, Faculty of 1000, Ltd.

    Professor Nicholas Luscombe

  23. Clinically Relevant Vulnerabilities of Deep Machine Learning Systems for Skin Cancer Diagnosis

    Article • Journal of Investigative Dermatology, September 2020, Elsevier

    Professor Nicholas Luscombe

  24. SPACE exploration of chromatin proteome to reveal associated RNA-binding proteins

    Article • July 2020, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  25. CD147 (BSG) but not ACE2 expression is detectable in vascular endothelial cells within single cell RNA sequencing datasets derived from multiple tissues in healthy individuals

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe, Professor Fiona M Watt

  26. Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq

    Article • Scientific Reports, March 2020, Springer Science + Business Media

    Professor Nicholas Luscombe

  27. PsiCLIP reveals dynamic RNA binding by DEAH-box helicases before and after exon ligation

    Article • March 2020, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  28. Nucleosome positioning stability is a modulator of germline mutation rate variation across the human genome

    Article • Nature Communications, March 2020, Springer Science + Business Media

    Professor Nicholas Luscombe, Cai Li

  29. What is AI? Applications of artificial intelligence to dermatology

    Article • British Journal of Dermatology, January 2020, Wiley

    Professor Fiona M Watt, Professor Nicholas Luscombe

  30. Intergenic RNA mainly derives from nascent transcripts of known genes

    Article • January 2020, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  31. Widespread use of the “ascidian” mitochondrial genetic code in tunicates

    Article • December 2019, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  32. RNA modifications detection by comparative Nanopore direct RNA sequencing

    Article • November 2019, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  33. AI networks work together to simulate human cells

    Article • February 2018, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe, Arsham Ghahramani

  34. Machine learning models in electronic health records can outperform conventional survival models for predicting patient mortality in coronary artery disease

    Article • January 2018, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe

  35. Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome

    Article • September 2017, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe, Cai Li

  36. Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis

    Article • July 2017, Cold Spring Harbor Laboratory Press

    Professor Nicholas Luscombe