All Stories

  1. Genomic insights into CKX genes: key players in cotton fibre development and abiotic stress responses

    Article • PeerJ, May 2024, PeerJ

    Mohammad Reza Ghaffari

  2. Decoding drought resilience: a comprehensive exploration of the cotton Eceriferum (CER) gene family and its role in stress adaptation

    Article • BMC Plant Biology, May 2024, Springer Science + Business Media

    Mohammad Reza Ghaffari

  3. Genotyping-by-sequencing and weighted gene co-expression network analysis of genes responsive against Potato virus Y in commercial potato cultivars

    Article • PLoS ONE, May 2024, PLOS

    Mohammad Reza Ghaffari

  4. Unveiling the population genetic structure of Iranian horses breeds by whole-genome resequencing analysis

    Article • Mammalian Genome, March 2024, Springer Science + Business Media

    Mohammad Reza Ghaffari

  5. Awareness of GMOs in terms of the Iran biosafety act: A case study of Tehran city

    Article • Heliyon, February 2024, Elsevier

    Mohammad Reza Ghaffari

  6. Transcriptome wide identification of neuropeptides and G protein-coupled receptors (GPCRs) in Sunn pest, Eurygaster integriceps Puton

    Article • Gene, January 2024, Elsevier

    Mohammad Reza Ghaffari

  7. Identification of the core collection in Iranian almond germplasm: utilizing morphological traits and evaluating biochemical properties of the collection

    Article • Genetic Resources and Crop Evolution, December 2023, Springer Science + Business Media

    Mohammad Reza Ghaffari

  8. Comparative Analysis of Exogenous Hormone Application on Contrasting Canola (Brassica napus L.) Genotypes Under Drought Stress Conditions

    Article • Journal of soil science and plant nutrition, December 2023, Springer Science + Business Media

    Mohammad Reza Ghaffari

  9. Comprehensive transcriptional analysis unveils salt stress-regulated key pathways in Suaeda salsa leaves

    Article • Plant Gene, December 2023, Elsevier

    Mohammad Reza Ghaffari

  10. Comparative Transcriptome Analysis of Hypocotyls During the Developmental Transition of C3 Cotyledons to C4 Leaves in Halimocnemis mollissima Bunge

    Article • Journal of Plant Growth Regulation, November 2023, Springer Science + Business Media

    Mohammad Reza Ghaffari

  11. Morphological and Physiological Alteration of Five Potato Cultivars in Response to Nitrogen Deficiency

    Article • Russian Journal of Plant Physiology, September 2023, Pleiades Publishing Ltd

    Mohammad Reza Ghaffari

  12. Correction: MicroRNA Profiling of Root Meristematic Zone in Contrasting Genotypes Reveals Novel Insight into in Rice Response to Water Deficiency

    Article • Journal of Plant Growth Regulation, August 2023, Springer Science + Business Media

    Mohammad Reza Ghaffari

  13. Association of ovine follistatin gene polymorphisms with body measurements, fat-tail traits and morphometric of head in Iranian Mehraban sheep

    Article • Small Ruminant Research, August 2023, Elsevier

    Mohammad Reza Ghaffari

  14. Comparative metabolomics of root-tips reveals distinct metabolic pathways conferring drought tolerance in contrasting genotypes of rice

    Article • BMC Genomics, March 2023, Springer Science + Business Media

    Mohammad Reza Ghaffari

  15. Comparison of the growth performance between pure Moghani sheep and crosses with Texel or Booroola sheep carrying major genes contributing to muscularity and prolificacy

    Article • Animal Biotechnology, January 2023, Taylor & Francis

    Mohammad Reza Ghaffari

  16. MicroRNA Profiling of Root Meristematic Zone in Contrasting Genotypes Reveals Novel Insight into in Rice Response to Water Deficiency

    Article • Journal of Plant Growth Regulation, December 2022, Springer Science + Business Media

    Mohammad Reza Ghaffari

  17. Comparative Transcriptome Analysis Unveils the Molecular Mechanism Underlying Sepal Colour Changes under Acidic pH Substratum in Hydrangea macrophylla

    Article • International Journal of Molecular Sciences, December 2022, MDPI AG

    Mohammad Reza Ghaffari

  18. Morphological and anatomical changes of Salicornia roots are associated with different salinity and nutrients conditions in contrasting genotypes

    Article • Rhizosphere, December 2022, Elsevier

    Mohammad Reza Ghaffari

  19. Genome-wide identification of StU-box gene family and assessment of their expression in developmental stages of Solanum tuberosum

    Article • Journal of Genetic Engineering and Biotechnology, December 2022, Elsevier

    Mohammad Reza Ghaffari

  20. Identification of myosin genes and their expression in response to biotic (PVY, PVX, PVS, and PVA) and abiotic (Drought, Heat, Cold, and High-light) stress conditions in potato

    Article • Molecular Biology Reports, October 2022, Springer Science + Business Media

    Mohammad Reza Ghaffari

  21. Genetic basis of muscle‐related traits in sheep: A review

    Article • Animal Genetics, October 2022, Wiley

    Mohammad Reza Ghaffari

  22. Non-coding RNA: Chief architects of drought-resilient roots

    Article • Rhizosphere, September 2022, Elsevier

    Mohammad Reza Ghaffari

  23. Comparative Transcriptome Analysis of Hypocotyls During the Developmental Transition of C3cotyledons to C4Leaves inHalimocnemis mollissimaBunge

    Article • May 2022, Cold Spring Harbor Laboratory Press

    Mohammad Reza Ghaffari

  24. Correlation network analysis of metabolites reveals the role of nitrogen-containing metabolic stressors in stimulating high-value compounds biosynthesis in Arthrospira platensis

    Article • Environmental Biology of Fishes, May 2022, Springer Science + Business Media

    Mohammad Reza Ghaffari

  25. Impact of environmental variables on yield related traits and bioactive compounds of the Persian fenugreek (Trigonella foenum-graecum L.) populations

    Article • Scientific Reports, May 2022, Springer Science + Business Media

    Mohammad Reza Ghaffari

  26. Genome-Wide Expression Analysis of Root Tips in Contrasting Rice Genotypes Revealed Novel Candidate Genes for Water Stress Adaptation

    Article • Frontiers in Plant Science, February 2022, Frontiers

    Mohammad Reza Ghaffari

  27. A computational learning paradigm to targeted discovery of biocatalysts from metagenomic data: A case study of lipase identification

    Article • Biotechnology and Bioengineering, February 2022, Wiley

    Mohammad Reza Ghaffari

  28. Efficient removal of various textile dyes from wastewater by novel thermo-halotolerant laccase

    Article • Bioresource Technology, October 2021, Elsevier

    Mohammad Reza Ghaffari

  29. New strategy to increase oil biodegradation efficiency by selecting isolates with diverse functionality and no antagonistic interactions for bacterial consortia

    Article • Journal of Environmental Chemical Engineering, October 2021, Elsevier

    Mohammad Reza Ghaffari

  30. A parallel hash‐based method for local sequence alignment

    Article • Concurrency and Computation Practice and Experience, August 2021, Wiley

    Mohammad Reza Ghaffari

  31. Seasonal Metabolic Investigation in Pomegranate (Punica granatum L.) Highlights the Role of Amino Acids in Genotype- and Organ-Specific Adaptive Responses to Freezing Stress

    Article • Frontiers in Plant Science, August 2021, Frontiers

    Mohammad Reza Ghaffari

  32. Application of DNA barcodes and spatial analysis in conservation genetics and modeling of Iranian Salicornia genetic resources

    Article • PLoS ONE, April 2021, PLOS

    Mohammad Reza Ghaffari

  33. Root endophytic fungus Serendipita indica modulates barley leaf blade proteome by increasing the abundance of photosynthetic proteins in response to salinity

    Article • Journal of Applied Microbiology, April 2021, Wiley

    Mohammad Reza Ghaffari

  34. Application of DNA barcodes and spatial analysis in conservation genetics and modeling of Iranian Salicornia genetic resources

    Article • October 2020, Cold Spring Harbor Laboratory Press

    Mohammad Reza Ghaffari

  35. Salt tolerance involved candidate genes in rice: an integrative meta-analysis approach

    Article • BMC Plant Biology, October 2020, Springer Science + Business Media

    Mohammad Reza Ghaffari

  36. Plant isomiRs: origins, biogenesis, and biological functions

    Article • Genomics, September 2020, Elsevier

    Mohammad Reza Ghaffari

  37. Proteomic analysis of wheat contrasting genotypes reveals the interplay between primary metabolic and regulatory pathways in anthers under drought stress

    Article • Journal of Proteomics, August 2020, Elsevier

    Mohammad Reza Ghaffari

  38. Co-abundance analysis reveals hidden players associated with high methane yield phenotype in sheep rumen microbiome

    Article • Scientific Reports, March 2020, Springer Science + Business Media

    Mohammad Reza Ghaffari

  39. Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings

    Article • Plant Physiology and Biochemistry, January 2020, Elsevier

    Mohammad Reza Ghaffari

  40. Plant–Microbe Symbiosis: What Has Proteomics Taught Us?

    Article • PROTEOMICS, August 2019, Wiley

    Mohammad Reza Ghaffari

  41. Effects of calcium and phosphorus enrichment on yield and physiological characteristics of Salicornia persica under different salinity levels

    Article • Journal of Plant Nutrition, April 2019, Taylor & Francis

    Mohammad Reza Ghaffari

  42. Salinity-associated microRNAs and their potential roles in mediating salt tolerance in rice colonized by the endophytic root fungus Piriformospora indica

    Article • Functional & Integrative Genomics, March 2019, Springer Science + Business Media

    Mohammad Reza Ghaffari

  43. Transcriptome response of roots to salt stress in a salinity-tolerant bread wheat cultivar

    Article • PLoS ONE, March 2019, PLOS

    Mohammad Reza Ghaffari

  44. Dissecting molecular mechanisms underlying salt tolerance in rice: a comparative transcriptional profiling of the contrasting genotypes

    Article • Rice, March 2019, Springer Science + Business Media

    Mohammad Reza Ghaffari

  45. Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming

    Article • Environmental and Experimental Botany, January 2019, Elsevier

    Mohammad Reza Ghaffari

  46. The Quest for Missing Proteins in Rice

    Article • Molecular Plant, January 2019, Elsevier

    Mohammad Reza Ghaffari

  47. Estimation of broad-sense heritability and variance components for seed yield and agronomic traits in native and exotic safflower (Carthamus tinctorius L.) genotypes

    Article • Bangladesh Journal of Botany, October 2018, Bangladesh Journals Online (BanglaJOL)

    Mohammad Reza Ghaffari

  48. Phenotypic Variability Assessment of Sugarcane Germplasm (Saccharum officinarum L.) and Extraction of an Applied Mini-Core Collection

    Article • Agriculture, July 2017, MDPI AG

    Mohammad Reza Ghaffari

  49. The Metabolic Signature of Biomass Formation in Barley

    Article • Plant and Cell Physiology, July 2016, Oxford University Press (OUP)

    Mohammad Reza Ghaffari

  50. PlantPReS: A database for plant proteome response to stress

    Article • Journal of Proteomics, June 2016, Elsevier

    Mohammad Reza Ghaffari

  51. Metabolic and transcriptional response of central metabolism affected by root endophytic fungus Piriformospora indica under salinity in barley

    Article • Plant Molecular Biology, March 2016, Springer Science + Business Media

    Mohammad Reza Ghaffari

  52. Proteomics Approach for Identification of Nutrient Deficiency Related Proteins in Crop Plants

    Article • January 2016, Springer Science + Business Media

    Mohammad Reza Ghaffari

  53. Ascorbate biosynthesis and its involvement in stress tolerance and plant development in rice (Oryza sativa L.)

    Article • Plant Molecular Biology, July 2015, Springer Science + Business Media

    Mohammad Reza Ghaffari

  54. Distribution of indole-3-acetic acid in Petunia hybrida shoot tip cuttings and relationship between auxin transport, carbohydrate metabolism and adventitious root formation

    Article • Planta, June 2013, Springer Science + Business Media

    Mohammad Reza Ghaffari

  55. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2010 – 31 May 2010

    Article • Molecular Ecology Resources, July 2010, Wiley

    Dr Frank Hailer, Mr Solomon Tin Chi Chak, Dr. GAETANO CATANESE, Mohammad Reza Ghaffari

  56. Isolation and Characterization of Novel Microsatellite Markers in Pomegranate (Punica granatum L.)

    Article • International Journal of Molecular Sciences, May 2010, MDPI AG

    Mohammad Reza Ghaffari

  57. Isolation and characterization of new microsatellite marker in Taxus baccata L.

    Article • Conservation Genetics Resources, February 2010, Springer Science + Business Media

    Mohammad Reza Ghaffari

  58. Assessing Rosa persica genetic diversity using amplified fragment length polymorphisms analysis

    Article • Scientia Horticulturae, May 2009, Elsevier

    Mohammad Reza Ghaffari

  59. Analysis of the molecular variation between and within cultivated and wild Pistacia species using AFLPs

    Article • Tree Genetics & Genomes, February 2009, Springer Science + Business Media

    Mohammad Reza Ghaffari

  60. Genetic diversity and relationships among Pistacia species and cultivars

    Article • Conservation Genetics, February 2009, Springer Science + Business Media

    Mohammad Reza Ghaffari

  61. Validation of EST-derived STS markers localized on Qfhs.ndsu-3BS for Fusarium head blight resistance in wheat using a ‘Wangshuibai’ derived population

    Article • Journal of Genetics and Genomics, October 2008, Elsevier

    Mohammad Reza Ghaffari

  62. Assessing wheat (Triticum aestivum L.) genetic diversity using quality traits, amplified fragment length polymorphisms, simple sequence repeats and proteome analysis

    Article • Annals of Applied Biology, November 2007, Wiley

    Mohammad Reza Ghaffari

  63. Comparison of genetic variation among accessions of Aegilops tauschii using AFLP and SSR markers

    Article • Genetic Resources and Crop Evolution, January 2007, Springer Science + Business Media

    Mohammad Reza Naghavi, Mohammad Reza Ghaffari