All Stories

  1. Exploring the genetic architecture of ecophysiological traits in microbial ecology using statistical analysis of the properties of protein sequences: application to the glycogen accumulating organism (GAO) phenotype

    Article • October 2023, Cold Spring Harbor Laboratory Press

    Michael Wise

  2. Slice Transformer and Self-supervised Learning for 6DoF Localization in 3D Point Cloud Maps

    Article • May 2023, Institute of Electrical & Electronics Engineers (IEEE)

    Michael Wise

  3. Travel-associated lineages and unique endemic antimicrobial-susceptible lineages of Neisseria gonorrhoeae predominate in Western Australia

    Article • Microbial Genomics, March 2023, Society for General Microbiology

    Michael Wise

  4. Editorial: What does not kill you makes you stronger: Interactions between environmental stresses and microbial virulence

    Article • Frontiers in Microbiology, January 2023, Frontiers

    Michael Wise

  5. Ten simple rules for investigating (meta)genomic data from environmental ecosystems

    Article • PLoS Computational Biology, December 2022, PLOS

    Michael Wise

  6. Deep learning models for RNA secondary structure prediction (probably) do not generalize across families

    Article • Bioinformatics, June 2022, Oxford University Press (OUP)

    Michael Wise

  7. From Rags to Enriched: Metagenomic Insights into Ammonia‐oxidizing Archaea Following Ammonia Enrichment of a Denuded Oligotrophic Soil Ecosystem

    Article • Environmental Microbiology, April 2022, Wiley

    Michael Wise

  8. Deep learning models for RNA secondary structure prediction (probably) do not generalise across families

    Article • March 2022, Cold Spring Harbor Laboratory Press

    Michael Wise

  9. Late-time X-ray observations of the transient source Cygnus A-2

    Article • Monthly Notices of the Royal Astronomical Society, February 2022, Oxford University Press (OUP)

    Michael Wise

  10. Small investments with big returns: environmental genomic bioprospecting of microbial life

    Article • Critical Reviews in Microbiology, January 2022, Taylor & Francis

    Michael Wise

  11. High Definition LiDAR mapping of Perth CBD

    Article • November 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Michael Wise

  12. Modelling evolutionary pathways for commensalism and hypervirulence in Neisseria meningitidis

    Article • Microbial Genomics, October 2021, Society for General Microbiology

    Michael Wise

  13. Absence of BapA type III effector protein affects Burkholderia pseudomallei intracellular lifecycle in human host cells

    Article • Process Biochemistry, September 2021, Elsevier

    Michael Wise

  14. Developing Bioprospecting Strategies for Bioplastics Through the Large-Scale Mining of Microbial Genomes

    Article • Frontiers in Microbiology, July 2021, Frontiers

    Michael Wise

  15. Temporal Microbial Community Dynamics Within a Unique Acid Saline Lake

    Article • Frontiers in Microbiology, June 2021, Frontiers

    Michael Wise

  16. A re-testing range is recommended for 13C- and 14C-urea breath tests for Helicobacter pylori infection in China

    Article • Gut Pathogens, June 2021, Springer Science + Business Media

    Michael Wise

  17. Annotation Tool and Urban Dataset for 3D Point Cloud Semantic Segmentation

    Article • IEEE Access, January 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Michael Wise

  18. Helicobacteriology update

    Article • Microbiology Australia, January 2021, CSIRO Publishing

    Michael Wise

  19. Temporal Microbial Community Dynamics within a Unique Acid Saline Lake

    Article • December 2020, Cold Spring Harbor Laboratory Press

    Michael Wise

  20. Mutations of Helicobacter pylori RdxA are mainly related to the phylogenetic origin of the strain and not to metronidazole resistance

    Article • Journal of Antimicrobial Chemotherapy, July 2020, Oxford University Press (OUP)

    Michael Wise

  21. SARS, SARS-Cov-2 and MERS are the Same Viral Species, Clades within Bat Beta-Coronaviruses

    Article • June 2020, Center for Open Science

    Michael Wise

  22. Meningococcal Disease-Associated Prophage-Like Elements Are Present in Neisseria gonorrhoeae and Some Commensal Neisseria Species

    Article • Genome Biology and Evolution, February 2020, Oxford University Press (OUP)

    Michael Wise

  23. Recent progress in the structure of glycogen serving as a durable energy reserve in bacteria

    Article • World Journal of Microbiology and Biotechnology, January 2020, Springer Science + Business Media

    Michael Wise

  24. A Longitudinal, Population-Level, Big-Data Study of Helicobacter pylori-Related Disease across Western Australia

    Article • Journal of Clinical Medicine, November 2019, MDPI AG

    Michael Wise

  25. What to do when a bacterium has grabbed another bugs DNA.

    Article • Evolutionary Applications, September 2019, Wiley

    Michael Wise

  26. So this is what a bladder looks like?

    Article • Research and Reports in Urology, September 2019, Taylor & Francis

    Barrry Marshall, Antonina Volikova, Michael Wise

  27. Molecular Structure of Glycogen in Escherichia coli

    Article • Biomacromolecules, June 2019, American Chemical Society (ACS)

    Michael Wise

  28. Systematic Analysis of Metabolic Pathway Distributions of Bacterial Energy Reserves

    Article • G3 Genes Genomes Genetics, May 2019, Genetics Society of America

    Michael Wise

  29. Evidence for a TDE origin of the radio transient Cygnus A-2

    Article • Monthly Notices of the Royal Astronomical Society, April 2019, Oxford University Press (OUP)

    Michael Wise

  30. Determining parameters for non-linear models of multi-loop free energy change

    Article • Bioinformatics, March 2019, Oxford University Press (OUP)

    Michael Wise

  31. The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039

    Article • Gut Pathogens, February 2019, Springer Science + Business Media

    Michael Wise

  32. Bioinformatics Analysis of Metabolism Pathways of Archaeal Energy Reserves

    Article • Scientific Reports, January 2019, Springer Science + Business Media

    Professor Wei Wang, Michael Wise

  33. Gastric Helicobacter pylori infection perturbs human oral microbiota

    Article • PeerJ, January 2019, PeerJ

    Michael Wise

  34. Structure and Evolution of Glycogen Branching Enzyme N-Termini From Bacteria

    Article • Frontiers in Microbiology, January 2019, Frontiers

    Michael Wise

  35. Analysis of core protein clusters identifies candidate variable sites conferring metronidazole resistance in Helicobacter pylori

    Article • Gastroenterology Report, January 2019, Oxford University Press (OUP)

    Michael Wise

  36. RNA Stable Isotope Probing (RNA-SIP)

    Article • January 2019, Springer Science + Business Media

    Michael Wise

  37. An updated view on bacterial glycogen structure

    Article • Microbiology Australia, January 2019, CSIRO Publishing

    Michael Wise

  38. Optimized M9 Minimal Salts Medium for Enhanced Growth Rate and Glycogen Accumulation of Escherichia coli DH5��

    Article • Microbiology and Biotechnology Letters, September 2018, Korean Society for Microbiology and Biotechnology

    Michael Wise

  39. Distribution Patterns of Polyphosphate Metabolism Pathway and Its Relationships With Bacterial Durability and Virulence

    Article • Frontiers in Microbiology, April 2018, Frontiers

    Michael Wise

  40. Genomic epidemiology and population structure of Neisseria gonorrhoeae from remote highly endemic Western Australian populations

    Article • BMC Genomics, February 2018, Springer Science + Business Media

    Michael Wise

  41. A Faster Algorithm for Maximum Induced Matchings on Circle Graphs

    Article • Journal of Graph Algorithms and Applications, January 2018, Journal of Graph Algorithms and Applications

    Michael Wise

  42. The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence

    Article • Frontiers in Microbiology, November 2017, Frontiers

    Michael Wise

  43. Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is best

    Article • Nucleic Acids Research, June 2017, Oxford University Press (OUP)

    Michael Wise

  44. Human Milk Composition and Function in the Infant

    Article • January 2017, Elsevier

    Michael Wise

  45. dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees

    Article • PLoS ONE, November 2016, PLOS

    Michael Wise

  46. Quantum changes inHelicobacter pylorigene expression accompany host-adaptation

    Article • DNA Research, November 2016, Oxford University Press (OUP)

    Michael Wise

  47. Consistent gene expression profiles in MexTAg transgenic mouse and wild type mouse asbestos-induced mesothelioma

    Article • BMC Cancer, December 2015, Springer Science + Business Media

    Michael Wise

  48. Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity

    Article • BMC Genomics, October 2015, Springer Science + Business Media

    Michael Wise

  49. Influence of in situ progressive N-terminal is still controversial truncation of glycogen branching enzyme in Escherichia coli DH5α on glycogen structure, accumulation, and bacterial viability

    Article • BMC Microbiology, May 2015, Springer Science + Business Media

    Michael Wise

  50. Comparative Analysis of the Full Genome of Helicobacter pylori Isolate Sahul64 Identifies Genes of High Divergence

    Article • Journal of Bacteriology, December 2013, ASM Journals

    Michael Wise

  51. Mean Protein Evolutionary Distance: A Method for Comparative Protein Evolution and Its Application

    Article • PLoS ONE, April 2013, PLOS

    Michael Wise

  52. A preliminary study on the effects of barnstars on Wikipedia editing

    Article • January 2013, ACM (Association for Computing Machinery)

    Michael Wise

  53. Predicting pseudoknotted structures across two RNA sequences

    Article • Bioinformatics, October 2012, Oxford University Press (OUP)

    Michael Wise

  54. Coexpression of Nuclear Receptors and Histone Methylation Modifying Genes in the Testis: Implications for Endocrine Disruptor Modes of Action

    Article • PLoS ONE, April 2012, PLOS

    Michael Wise

  55. Intrinsically disordered proteins as molecular shields

    Article • Molecular BioSystems, January 2012, Royal Society of Chemistry

    Michael Wise

  56. Role of Pro-oncogenic Protein Disulfide Isomerase (PDI) Family Member Anterior Gradient 2 (AGR2) in the Control of Endoplasmic Reticulum Homeostasis

    Article • Journal of Biological Chemistry, October 2011, American Society for Biochemistry & Molecular Biology (ASBMB)

    Michael Wise

  57. Glycogen with short average chain length enhances bacterial durability

    Article • The Science of Nature, August 2011, Springer Science + Business Media

    Michael Wise

  58. Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins

    Article • RNA, November 2010, Cold Spring Harbor Laboratory Press

    Michael Wise

  59. Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae

    Article • BMC Molecular Biology, January 2010, Springer Science + Business Media

    Michael Wise

  60. No so HoT - heads or tails is not able to reliably compare multiple sequence alignments

    Article • Cladistics, November 2009, Wiley

    Michael Wise

  61. Bioinformatics and protein expression analyses implicate LEA proteins in the drought response of Collembola

    Article • Journal of Insect Physiology, March 2009, Elsevier

    Mr SImon Bahrndorff, Michael Wise

  62. Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments

    Article • Molecular Biology and Evolution, August 2007, Oxford University Press (OUP)

    Michael Wise

  63. The continuing conundrum of the LEA proteins

    Article • The Science of Nature, May 2007, Springer Science + Business Media

    Michael Wise

  64. Analysis of High Throughput Protein Expression in Escherichia coli

    Article • Molecular & Cellular Proteomics, June 2006, American Society for Biochemistry & Molecular Biology (ASBMB)

    Michael Wise

  65. Consideration of RNA Secondary Structure Significantly Improves Likelihood-Based Estimates of Phylogeny: Examples from the Bilateria

    Article • Molecular Biology and Evolution, January 2005, Oxford University Press (OUP)

    Michael Wise

  66. POPP the question: what do LEA proteins do?

    Article • Trends in Plant Science, January 2004, Elsevier

    Michael Wise

  67. Regionalized GC content of template DNA as a predictor of PCR success

    Article • Nucleic Acids Research, August 2003, Oxford University Press (OUP)

    Michael Wise

  68. DiMSim:  A Discrete-Event Simulator of Metabolic Networks

    Article • Journal of Chemical Information and Computer Sciences, May 2003, American Chemical Society (ACS)

    Michael Wise

  69. Article • BMC Bioinformatics, January 2003, Springer Science + Business Media

    Michael Wise

  70. Amyloidogenic nature of spider silk

    Article • European Journal of Biochemistry, August 2002, Wiley

    Michael Wise

  71. Protein Annotators’ Assistant

    Article • Trends in Biochemical Sciences, May 2000, Elsevier

    Michael Wise

  72. Protein annotators' assistant: A novel application of information retrieval techniques

    Article • Journal of the American Society for Information Science, January 2000, Wiley

    Michael Wise

  73. Achieving Incremental Compilation through Fine-grained Builds

    Article • Software Practice and Experience, May 1997, Wiley

    Michael Wise

  74. Peptide-mass fingerprinting and the ideal covering set for protein characterisation

    Article • Electrophoresis, January 1997, Wiley

    Michael Wise

  75. Plagiarism a la Mode: A Comparison of Automated Systems for Detecting Suspected Plagiarism

    Article • The Computer Journal, September 1996, Oxford University Press (OUP)

    Michael Wise

  76. YAP3

    Article • ACM SIGCSE Bulletin, March 1996, ACM (Association for Computing Machinery)

    Michael Wise

  77. Experience with PMS-Prolog: A distributed, coarse-grain-parallel prolog with processes, modules and streams

    Article • Software Practice and Experience, February 1993, Wiley

    Michael Wise

  78. Detection of similarities in student programs

    Article • ACM SIGCSE Bulletin, March 1992, ACM (Association for Computing Machinery)

    Michael Wise

  79. EPILOG = PROLOG + Data Flow

    Article • ACM SIGPLAN Notices, December 1982, ACM (Association for Computing Machinery)

    Michael Wise

  80. Critique of orthogonal persistence

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Michael Wise