All Stories

  1. Viromes, Not Gene Markers, for Studying Double-Stranded DNA Virus Communities

    Article • Journal of Virology, December 2014, ASM Journals

    Professor Matthew B Sullivan

  2. Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

    Article • eLife, August 2014, eLife

    Professor Matthew B Sullivan

  3. Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome

    Article • The ISME Journal, August 2014, Oxford University Press (OUP)

    Professor Matthew B Sullivan

  4. Viral tagging reveals discrete populations in Synechococcus viral genome sequence space

    Article • Nature, July 2014, Springer Science + Business Media

    Professor Matthew B Sullivan

  5. Contrasting genomic patterns and infection strategies of two co‐existing Bacteroidetes podovirus genera

    Article • Environmental Microbiology, February 2014, Wiley

    Professor Matthew B Sullivan

  6. Metabolic reprogramming by viruses in the sunlit and dark ocean

    Article • Genome Biology, November 2013, Springer Science + Business Media

    Professor Matthew B Sullivan

  7. The global virome: not as big as we thought?

    Article • Current Opinion in Virology, October 2013, Elsevier

    Professor Matthew B Sullivan

  8. Meeting report of the European Molecular Biology Organization (EMBO) Symposium ‘Viruses of Microbes II’, Brussels, July 2012

    Article • Research in Microbiology, September 2013, Elsevier

    Professor Matthew B Sullivan, Prof. em. Mario Vaneechoutte

  9. Sequencing platform and library preparation choices impact viral metagenomes

    Article • BMC Genomics, May 2013, Springer Science + Business Media

    Professor Matthew B Sullivan

  10. Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

    Article • The ISME Journal, May 2013, Oxford University Press (OUP)

    Professor Matthew B Sullivan

  11. Single‐cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses

    Article • Environmental Microbiology, March 2013, Wiley

    Professor Matthew B Sullivan

  12. The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

    Article • PLoS ONE, February 2013, PLOS

    Professor Matthew B Sullivan

  13. Abundant SAR11 viruses in the ocean

    Article • Nature, February 2013, Springer Science + Business Media

    Professor Matthew B Sullivan, Cameron Thrash

  14. Phage–bacteria infection networks

    Article • Trends in Microbiology, February 2013, Elsevier

    Professor Matthew B Sullivan, Dr Sergi Valverde

  15. Preparation of Metagenomic Libraries from Naturally Occurring Marine Viruses

    Article • January 2013, Elsevier

    Professor Matthew B Sullivan

  16. Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline

    Article • Virology, December 2012, Elsevier

    Professor Matthew B Sullivan

  17. Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean

    Article • The ISME Journal, November 2012, Oxford University Press (OUP)

    Professor Matthew B Sullivan

  18. Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

    Article • Environmental Microbiology, July 2012, Wiley

    Professor Matthew B Sullivan

  19. Towards quantitative metagenomics of wild viruses and other ultra‐low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method

    Article • Environmental Microbiology, June 2012, Wiley

    Professor Matthew B Sullivan

  20. Phylogenomics of T4 cyanophages: lateral gene transfer in the ‘core’ and origins of host genes

    Article • Environmental Microbiology, February 2012, Wiley

    Professor Matthew B Sullivan

  21. A simple and efficient method for concentration of ocean viruses by chemical flocculation

    Article • Environmental Microbiology Reports, October 2011, Wiley

    Professor Matthew B Sullivan, Professor Martin Polz

  22. A Holistic Approach to Marine Eco-Systems Biology

    Article • PLoS Biology, October 2011, PLOS

    Professor Matthew B Sullivan, Professor Emmanuel S Boss

  23. Portal protein diversity and phage ecology

    Article • Environmental Microbiology, October 2011, Wiley

    Professor Matthew B Sullivan

  24. Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environments

    Article • Environmental Microbiology, November 2010, Wiley

    Professor Matthew B Sullivan

  25. A simple and efficient method for concentration of ocean viruses by chemical flocculation

    Article • Environmental Microbiology Reports, August 2010, Wiley

    Professor Matthew B Sullivan, Professor Martin Polz

  26. Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus

    Article • Nature Structural & Molecular Biology, June 2010, Springer Science + Business Media

    Professor Matthew B Sullivan

  27. Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

    Article • PLoS ONE, February 2010, PLOS

    Professor Matthew B Sullivan

  28. The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’

    Article • Environmental Microbiology, October 2009, Wiley

    Professor Matthew B Sullivan

  29. Portal protein diversity and phage ecology

    Article • Environmental Microbiology, September 2008, Wiley

    Professor Matthew B Sullivan

  30. Efficient Phage-Mediated Pigment Biosynthesis in Oceanic Cyanobacteria

    Article • Current Biology, March 2008, Elsevier

    Professor Matthew B Sullivan

  31. Culturing the marine cyanobacterium Prochlorococcus

    Article • Limnology and Oceanography Methods, October 2007, Wiley

    Professor Matthew B Sullivan

  32. Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

    Article • Nature, September 2007, Springer Science + Business Media

    Professor Matthew B Sullivan

  33. Exploring the Vast Diversity of Marine Viruses

    Article • Oceanography, June 2007, The Oceanography Society

    Professor Matthew B Sullivan, Professor curtis A suttle

  34. Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their Hosts

    Article • PLoS Biology, July 2006, PLOS

    Professor Matthew B Sullivan

  35. Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior

    Article • Science, January 2006, American Association for the Advancement of Science

    Professor Matthew B Sullivan, Dr Robert A Edwards

  36. Marine phage genomics: what have we learned?

    Article • Current Opinion in Biotechnology, June 2005, Elsevier

    Professor Matthew B Sullivan

  37. Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological Interpretations

    Article • PLoS Biology, April 2005, PLOS

    Professor Matthew B Sullivan

  38. corrigendum: Cyanophages infecting the oceanic cyanobacterium Prochlorococcus

    Article • December 2003

    Professor Matthew B Sullivan

  39. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus

    Article • August 2003

    Professor Matthew B Sullivan

  40. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

    Article • August 2003

    Professor Matthew B Sullivan

  41. Marine phage genomics

    Article • Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology, December 2002, Elsevier

    Professor Matthew B Sullivan

  42. Denitrification in estuarine sediments determined by membrane inlet mass spectrometry

    Article • Limnology and Oceanography, March 1998, Wiley

    Professor Matthew B Sullivan