All Stories

  1. DrugDomain: The evolutionary context of drugs and small molecules bound to domains

    Article • Protein Science, July 2024, Wiley

    Dr Kirill E Medvedev

  2. Structure classification of the proteins from Salmonella enterica pangenome

    Article • Scientific Reports, May 2024, Springer Science + Business Media

    Dr Kirill E Medvedev

  3. ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

    Article • PLoS Computational Biology, February 2024, PLOS

    Dr Kirill E Medvedev

  4. Deep Learning for Subtypes Identification of Pure Seminoma of the Testis

    Article • Clinical Pathology, January 2024, SAGE Publications

    Dr Kirill E Medvedev

  5. Pathogenic mutation hotspots in protein kinase domain structure

    Article • Protein Science, August 2023, Wiley

    Dr Kirill E Medvedev

  6. Pan-cancer structurome

    Article • Scientific Reports, July 2023, Springer Science + Business Media

    Dr Kirill E Medvedev

  7. Seminoma subtypes differ in the organization and functional state of the immune microenvironment

    Article • 3 Biotech, March 2023, Springer Science + Business Media

    Dr Kirill E Medvedev

  8. Deep learning for subtypes identification of pure seminoma of the testis

    Article • May 2022, Cold Spring Harbor Laboratory Press

    Dr Kirill E Medvedev

  9. Integrated molecular analysis reveals two distinct subtypes of pure seminoma of the testis

    Article • April 2022, Cold Spring Harbor Laboratory Press

    Dr Kirill E Medvedev

  10. DisEnrich: database of enriched regions in human dark proteome

    Article • Bioinformatics, January 2022, Oxford University Press (OUP)

    Dr Kirill E Medvedev

  11. Integrated Molecular Analysis Reveals 2 Distinct Subtypes of Pure Seminoma of the Testis

    Article • Cancer Informatics, January 2022, SAGE Publications

    Dr Kirill E Medvedev

  12. Completeness and Consistency in Structural Domain Classifications

    Article • ACS Omega, June 2021, American Chemical Society (ACS)

    Dr Kirill E Medvedev

  13. A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit

    Article • Journal of Molecular Biology, February 2021, Elsevier

    Dr Kirill E Medvedev

  14. Recent advances suggest increased influence of selective pressure in allostery

    Article • Current Opinion in Structural Biology, June 2020, Elsevier

    Dr Kirill E Medvedev

  15. Rossmann-Like Proteins Function and Evolution Analysis of a Fifth of the Protein World

    Article • Biophysical Journal, February 2020, Elsevier

    Dr Kirill E Medvedev

  16. The Potential of Single Cell RNA-Sequencing Data for the Prediction of Gastric Cancer Serum Biomarkers

    Article • January 2020, Springer Science + Business Media

    Dr Kirill E Medvedev

  17. Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways

    Article • PLoS Computational Biology, December 2019, PLOS

    Jinhui Shen, Dr Kirill E Medvedev

  18. ECOD: identification of distant homology among multidomain and transmembrane domain proteins

    Article • BMC Molecular and Cell Biology, June 2019, Springer Science + Business Media

    Dr Kirill E Medvedev

  19. Functional and evolutionary analysis of viral proteins containing a Rossmann-like fold

    Article • Protein Science, June 2018, Wiley

    Dr Kirill E Medvedev

  20. Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions

    Article • Journal of Bioinformatics and Computational Biology, April 2017, World Scientific Pub Co Pte Lt

    Dr Kirill E Medvedev

  21. High temperature and pressure influence the interdomain orientation of Nip7 proteins from P. abyssi and P. furiosus: MD simulations

    Article • Journal of Biomolecular Structure and Dynamics, January 2017, Taylor & Francis

    Dr Kirill E Medvedev

  22. Molecular dynamics simulations of the Nip7 proteins from the marine deep- and shallow-water Pyrococcus species

    Article • BMC Structural Biology, October 2014, Springer Science + Business Media

    Dr Kirill E Medvedev

  23. Important role of hydrophobic interactions in high-pressure adaptation of proteins

    Article • Doklady Biochemistry and Biophysics, June 2011, Pleiades Publishing Ltd

    Dr Kirill E Medvedev