All Stories

  1. Vulnerability of deep neural networks for detecting COVID-19 cases from chest X-ray images to universal adversarial attacks

    Article • PLoS ONE, December 2020, PLOS

    Kazuhiro Takemoto

  2. MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes

    Article • Bioscience Biotechnology and Biochemistry, May 2018, Taylor & Francis

    Kazuhiro Takemoto, Dr. Hiroyuki Ogata

  3. Cancer, metabolic rate and genome

    Article • Royal Society Open Science, September 2016, Royal Society Publishing

    Kazuhiro Takemoto

  4. An automated system for evaluation of the potential functionome: MAPLE version 2.1.0

    Article • DNA Research, July 2016, Oxford University Press (OUP)

    Kazuhiro Takemoto

  5. Human Impacts and Climate Change Influence Nestedness and Modularity in Food-Web and Mutualistic Networks

    Article • PLoS ONE, June 2016, PLOS

    Kazuhiro Takemoto

  6. Habitat variability does not generally promote metabolic network modularity in flies and mammals

    Article • Biosystems, January 2016, Elsevier

    Kazuhiro Takemoto

  7. Habitat variability does not generally promote metabolic network modularity in flies and mammals

    Article • December 2015, Cold Spring Harbor Laboratory Press

    Kazuhiro Takemoto

  8. Functional Classification of Uncultured “Candidatus Caldiarchaeum subterraneum” Using the Maple System

    Article • PLoS ONE, July 2015, PLOS

    Kazuhiro Takemoto

  9. The proportion of genes in a functional category is linked to mass-specific metabolic rate and lifespan

    Article • Scientific Reports, May 2015, Nature

    Kazuhiro Takemoto

  10. Heterogeneity of cells may explain allometric scaling of metabolic rate

    Article • Biosystems, April 2015, Elsevier

    Kazuhiro Takemoto

  11. Metabolic networks are almost nonfractal: A comprehensive evaluation

    Article • Physical Review E, August 2014, American Physical Society (APS)

    Kazuhiro Takemoto

  12. Heterogeneity in ecological mutualistic networks dominantly determines community stability

    Article • Scientific Reports, August 2014, Nature

    Kazuhiro Takemoto

  13. Climatic seasonality may affect ecological network structure: Food webs and mutualistic networks

    Article • Biosystems, July 2014, Elsevier

    Kazuhiro Takemoto

  14. Correction: Does Habitat Variability Really Promote Metabolic Network Modularity?

    Article • PLoS ONE, October 2013, PLOS

    Kazuhiro Takemoto

  15. Limited Influence of Oxygen on the Evolution of Chemical Diversity in Metabolic Networks

    Article • Metabolites, October 2013, MDPI AG

    Kazuhiro Takemoto

  16. Modular organization of cancer signaling networks is associated with patient survivability

    Article • Biosystems, September 2013, Elsevier

    Kazuhiro Takemoto

  17. Does Habitat Variability Really Promote Metabolic Network Modularity?

    Article • PLoS ONE, April 2013, PLOS

    Kazuhiro Takemoto

  18. Metabolic network modularity arising from simple growth processes

    Article • Physical Review E, September 2012, American Physical Society (APS)

    Kazuhiro Takemoto

  19. Current Understanding of the Formation and Adaptation of Metabolic Systems Based on Network Theory

    Article • Metabolites, July 2012, MDPI AG

    Kazuhiro Takemoto

  20. Modeling for Evolving Biological Networks

    Article • June 2012, Wiley

    Kazuhiro Takemoto

  21. Introduction to Complex Networks: Measures, Statistical Properties, and Models

    Article • June 2012, Wiley

    Kazuhiro Takemoto

  22. Analysis of the impact degree distribution in metabolic networks using branching process approximation

    Article • Physica A Statistical Mechanics and its Applications, January 2012, Elsevier

    Kazuhiro Takemoto

  23. Metabolic Network Modularity in Archaea Depends on Growth Conditions

    Article • PLoS ONE, October 2011, PLOS

    Kazuhiro Takemoto

  24. Nested structure acquired through simple evolutionary process

    Article • Journal of Theoretical Biology, June 2010, Elsevier

    Kazuhiro Takemoto

  25. Global architecture of metabolite distributions across species and its formation mechanisms

    Article • Biosystems, April 2010, Elsevier

    Kazuhiro Takemoto

  26. Prediction of Protein Folding Rates from Structural Topology and Complex Network Properties

    Article • IPSJ Transactions on Bioinformatics, January 2010, Information Processing Society of Japan

    Kazuhiro Takemoto

  27. ANALYSIS AND PREDICTION OF NUTRITIONAL REQUIREMENTS USING STRUCTURAL PROPERTIES OF METABOLIC NETWORKS AND SUPPORT VECTOR MACHINES

    Article • January 2010, World Scientific Pub Co Pte Lt

    Kazuhiro Takemoto

  28. Finding Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model Using Integer Programming and Feedback Vertex Sets

    Article • International Journal of Knowledge Discovery in Bioinformatics, January 2010, IGI Global

    Kazuhiro Takemoto

  29. Heterogeneous distribution of metabolites across plant species

    Article • Physica A Statistical Mechanics and its Applications, July 2009, Elsevier

    Kazuhiro Takemoto

  30. Measuring Structural Robustness of Metabolic Networks under a Boolean Model Using Integer Programming and Feedback Vertex Sets

    Article • March 2009, Institute of Electrical & Electronics Engineers (IEEE)

    Kazuhiro Takemoto

  31. Origin of structural difference in metabolic networks with respect to temperature

    Article • BMC Systems Biology, January 2008, Springer Science + Business Media

    Kazuhiro Takemoto

  32. Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity

    Article • Mathematical Biosciences, August 2007, Elsevier

    Kazuhiro Takemoto

  33. Structure of n-clique networks embedded in a complex network

    Article • Physica A Statistical Mechanics and its Applications, July 2007, Elsevier

    Kazuhiro Takemoto

  34. Correlation between structure and temperature in prokaryotic metabolic networks

    Article • BMC Bioinformatics, January 2007, Springer Science + Business Media

    Kazuhiro Takemoto

  35. Evolving networks by merging cliques

    Article • Physical Review E, October 2005, American Physical Society (APS)

    Kazuhiro Takemoto

  36. Finding Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model

    Article • IGI Global

    Kazuhiro Takemoto

  37. Finding Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model Using Integer Programming and Feedback Vertex Sets

    Article • IGI Global

    Kazuhiro Takemoto

  38. Finding Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model Using Integer Programming and Feedback Vertex Sets

    Article • IGI Global

    Kazuhiro Takemoto