All Stories

  1. a database on nucleobase compounds

    Article • Journal of Applied Crystallography, May 2016, International Union of Crystallography

    Professor Kanagaraj Sekar

  2. EbolavirusDatabase: Gene and Protein Information Resource for Ebolaviruses

    Article • Advances in Bioinformatics, January 2016, Hindawi Publishing Corporation

    Professor Kanagaraj Sekar

  3. Role of conserved water molecules in structure and function of human transthyretin

    Article • Acta Crystallographica Section D Biological Crystallography, October 2015, International Union of Crystallography

    Professor Bishnu Prasad Mukhopadhyay, Professor Kanagaraj Sekar

  4. The end point of model refinement in macromolecules; what are the coordinate errors?

    Article • Acta Crystallographica Section A Foundations and Advances, August 2015, International Union of Crystallography

    Professor Kanagaraj Sekar

  5. Catalytic pathway, substrate binding and stability in SAICAR synthetase: A structure and molecular dynamics study

    Article • Journal of Structural Biology, July 2015, Elsevier

    Professor Kanagaraj Sekar

  6. Small Angle Neutron Scattering Studies of Glucose Oxidase Immobilized on Single Layer Graphene: Relevant to Protein Microfluidic Chip

    Article • Biophysical Journal, January 2015, Elsevier

    Mr Gurusaran Manickam, Professor Kanagaraj Sekar

  7. Haemophilus influenzae Genome Database (HIGDB): A single point web resource for Haemophilus influenzae

    Article • Computers in Biology and Medicine, December 2014, Elsevier

    Professor Kanagaraj Sekar

  8. Streptococcus pneumoniae Genome Database (SPGDB): A database for strain specific comparative analysis of Streptococcus pneumoniae genes and proteins

    Article • Genomics, December 2014, Elsevier

    Professor Kanagaraj Sekar

  9. Anthrapyrazolone analogues intercept inflammatory JNK signals to moderate endotoxin induced septic shock

    Article • Scientific Reports, November 2014, Nature

    Professor Kanagaraj Sekar

  10. A knowledgebase of macromolecular non-covalent interactions including precision

    Article • Acta Crystallographica Section A Foundations and Advances, August 2014, International Union of Crystallography

    Professor Kanagaraj Sekar

  11. PPS: A computing engine to find Palindromes in all Protein sequences

    Article • Bioinformation, January 2014, Biomedical Informatics

    Mr Gurusaran Manickam, Professor Kanagaraj Sekar

  12. Alkyl chain substituted 1,9-pyrazoloanthrones exhibit prominent inhibitory effect on c-Jun N-terminal kinase (JNK)

    Article • Organic & Biomolecular Chemistry, January 2014, Royal Society of Chemistry

    Professor Kanagaraj Sekar

  13. Estimating the atomic coordinate errors of atoms in proteins is important.

    Article • IUCrJ, December 2013, International Union of Crystallography

    Professor John Richard Helliwell, Mr Gurusaran Manickam, Professor Kanagaraj Sekar

  14. Molecular Dynamics Perspective on the Protein Thermal Stability: A Case Study Using SAICAR Synthetase

    Article • Journal of Chemical Information and Modeling, September 2013, American Chemical Society (ACS)

    Professor Kanagaraj Sekar

  15. A method to find palindromes in nucleic acid sequences

    Article • Bioinformation, March 2013, Biomedical Informatics

    Professor Kanagaraj Sekar

  16. Comparative genomics reveals ‘novel’ Fur regulated sRNAs and coding genes in diverse proteobacteria

    Article • Gene, March 2013, Elsevier

    Professor Kanagaraj Sekar

  17. Structure of SAICAR synthetase from Pyrococcus horikoshii OT3: Insights into thermal stability

    Article • International Journal of Biological Macromolecules, February 2013, Elsevier

    Professor Kanagaraj Sekar

  18. Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of thymidylate kinase (TTHA1607) fromThermus thermophilusHB8

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, January 2013, International Union of Crystallography

    Professor Kanagaraj Sekar

  19. Crystal structures and binding studies of atovaquone and its derivatives with cytochrome bc1: a molecular basis for drug design

    Article • CrystEngComm, January 2013, Royal Society of Chemistry

    Professor Kanagaraj Sekar

  20. Aromatic-aromatic interactions in structures of proteins and protein-DNA complexes: a study based on orientation and distance

    Article • Bioinformation, December 2012, Biomedical Informatics

    Professor Kanagaraj Sekar

  21. Crystal structure (Type-1) of SAICAR synthetase from Pyrococcus horikoshii OT3

    Article • October 2012, Protein Data Bank, Rutgers University

    Professor Kanagaraj Sekar

  22. Crystal structure (Type-2) of SAICAR synthetase from Pyrococcus horikoshii OT3

    Article • October 2012, Protein Data Bank, Rutgers University

    Professor Kanagaraj Sekar

  23. Differential Activities of the Two Closely Related Withanolides, Withaferin A and Withanone: Bioinformatics and Experimental Evidences

    Article • PLoS ONE, September 2012, PLOS

    Professor Kanagaraj Sekar

  24. Homepeptide Repeats: Implications for Protein Structure, Function and Evolution

    Article • Genomics Proteomics & Bioinformatics, August 2012, Elsevier

    Mr Gurusaran Manickam, Professor Kanagaraj Sekar

  25. Sequence-Structure Similarity: Do Sequentially Identical Peptide Fragments have Similar Three-Dimensional Structures?

    Article • Current Bioinformatics, May 2012, Bentham Science Publishers

    Professor Kanagaraj Sekar

  26. SMS 2.0: An Updated Database to Study the Structural Plasticity of Short Peptide Fragments in Non-redundant Proteins

    Article • Genomics Proteomics & Bioinformatics, February 2012, Elsevier

    Professor Kanagaraj Sekar

  27. As3p: A Fast Algorithm to Search Structurally Similar Proteins

    Article • January 2012, Springer Science + Business Media

    Mr Gurusaran Manickam, Professor Kanagaraj Sekar

  28. Junker: An Intergenic Explorer for Bacterial Genomes

    Article • Genomics Proteomics & Bioinformatics, October 2011, Elsevier

    Professor Kanagaraj Sekar

  29. BSSB:BLASTServer for Structural Biologists

    Article • Journal of Applied Crystallography, April 2011, International Union of Crystallography

    Professor Kanagaraj Sekar

  30. RPS: Repeats in Protein Sequences

    Article • Journal of Applied Crystallography, April 2011, International Union of Crystallography

    Professor Kanagaraj Sekar

  31. Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, December 2010, International Union of Crystallography

    Professor Kanagaraj Sekar

  32. Correction: sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

    Article • PLoS ONE, September 2010, PLOS

    Professor Kanagaraj Sekar

  33. sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

    Article • PLoS ONE, August 2010, PLOS

    Professor Kanagaraj Sekar

  34. Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC fromThermus thermophilusHB8

    Article • Acta Crystallographica Section D Biological Crystallography, June 2010, International Union of Crystallography

    Professor Kanagaraj Sekar

  35. PsRNA: A Computing Engine for the Comparative Identification of Putative Small RNA Locations within Intergenic Regions

    Article • Genomics Proteomics & Bioinformatics, June 2010, Elsevier

    Professor Kanagaraj Sekar

  36. Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of the putative SAICAR synthetase (PH0239) fromPyrococcus horikoshiiOT3

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, January 2010, International Union of Crystallography

    Professor Kanagaraj Sekar

  37. Free and ATP-bound structures of Ap4A hydrolase fromAquifex aeolicusV5

    Article • Acta Crystallographica Section D Biological Crystallography, January 2010, International Union of Crystallography

    Professor Kanagaraj Sekar

  38. FAIR: A server for internal sequence repeats

    Article • Bioinformation, January 2010, Biomedical Informatics

    Professor Kanagaraj Sekar

  39. CsrA interacting small RNAs in Haemophilus spp genomes: a theoretical analysis

    Article • Archives of Microbiology, April 2009, Springer Science + Business Media

    Professor Kanagaraj Sekar

  40. CSSP(Consensus Secondary Structure Prediction): a web-based server for structural biologists

    Article • Journal of Applied Crystallography, January 2009, International Union of Crystallography

    Professor Kanagaraj Sekar

  41. Structural and functional role of water molecules in bovine pancreatic phospholipase A2: a data-mining approach

    Article • Acta Crystallographica Section D Biological Crystallography, December 2008, International Union of Crystallography

    Professor Kanagaraj Sekar

  42. Structures and molecular-dynamics studies of three active-site mutants of bovine pancreatic phospholipase A2

    Article • Acta Crystallographica Section D Biological Crystallography, September 2008, International Union of Crystallography

    Professor Kanagaraj Sekar

  43. Observation of a calcium-binding site in the γ-class carbonic anhydrase fromPyrococcus horikoshii

    Article • Acta Crystallographica Section D Biological Crystallography, September 2008, International Union of Crystallography

    Professor Kanagaraj Sekar

  44. Algorithm to find distant repeats in a single protein sequence

    Article • Bioinformation, September 2008, Biomedical Informatics

    Professor Kanagaraj Sekar

  45. Crystallization and preliminary crystallographic studies of L30e, a ribosomal protein fromMethanocaldococcus jannaschii(MJ1044)

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, January 2008, International Union of Crystallography

    Professor Kanagaraj Sekar

  46. A Method to Find Sequentially Separated Motifs in Biological Sequences (SSMBS)

    Article • January 2008, Springer Science + Business Media

    Professor Kanagaraj Sekar

  47. Preliminary X-ray crystallographic study of glucose dehydrogenase fromThermus thermophilusHB8

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, April 2007, International Union of Crystallography

    Professor Kanagaraj Sekar

  48. Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of molybdopterin synthase fromThermus thermophilusHB8

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, March 2007, International Union of Crystallography

    Professor Kanagaraj Sekar

  49. Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of DHNA synthetase fromGeobacillus kaustophilus

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, January 2007, International Union of Crystallography

    Professor Kanagaraj Sekar

  50. Crystallization and preliminary crystallographic analysis of molybdenum-cofactor biosynthesis protein C fromThermus thermophilus

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, December 2006, International Union of Crystallography

    Professor Kanagaraj Sekar

  51. Artificial life and living systems: Insight into artificial life and its implications in life science research

    Article • Bioinformation, March 2006, Biomedical Informatics

    Professor Kanagaraj Sekar

  52. PSST-2.0

    Article • Applied Bioinformatics, January 2005, Springer Science + Business Media

    Professor Kanagaraj Sekar

  53. Crystal Structure of the Complex of Bovine Pancreatic Phospholipase A 2 with the Inhibitor 1-Hexadecyl-3-(trifluoroethyl)- sn -glycero-2-phosphomethanol † , ‡

    Article • Biochemistry, November 1997, American Chemical Society (ACS)

    Professor Kanagaraj Sekar

  54. Phospholipase A 2 Engineering. Structural and Functional Roles of the Highly Conserved Active Site Residue Aspartate-99 †

    Article • Biochemistry, March 1997, American Chemical Society (ACS)

    Professor Kanagaraj Sekar

  55. Phospholipase A2Engineering. Deletion of the C-Terminus Segment Changes Substrate Specificity and Uncouples Calcium and Substrate Binding at the Zwitterionic Interface†,∇

    Article • Biochemistry, January 1996, American Chemical Society (ACS)

    Professor Kanagaraj Sekar