All Stories

  1. Echinobase: a resource to support the echinoderm research community

    Article • Genetics, January 2024, Oxford University Press (OUP)

    Dr Kamran Karimi

  2. Xenbase: key features and resources of the Xenopus model organism knowledgebase

    Article • Genetics, February 2023, Oxford University Press (OUP)

    Dr Kamran Karimi

  3. The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development

    Article • BMC Bioinformatics, March 2022, Springer Science + Business Media

    Dr Kamran Karimi

  4. Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms

    Article • Nucleic Acids Research, November 2021, Oxford University Press (OUP)

    Dr Kamran Karimi

  5. The Xenopus Phenotype Ontology: bridging model organism phenotype data to human health and development

    Article • November 2021, Cold Spring Harbor Laboratory Press

    Dr Kamran Karimi

  6. Classifying domain-specific text documents containing ambiguous keywords

    Article • Database, September 2021, Oxford University Press (OUP)

    Dr Kamran Karimi

  7. Integration of 1:1 orthology maps and updated datasets into Echinobase

    Article • Database, January 2021, Oxford University Press (OUP)

    Dr Kamran Karimi

  8. Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database

    Article • Nucleic Acids Research, November 2019, Oxford University Press (OUP)

    Dr Kamran Karimi

  9. Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef‐building coral

    Article • Molecular Ecology, August 2019, Wiley

    Dr Kamran Karimi

  10. The protein repertoire in early vertebrate embryogenesis

    Article • March 2019, Cold Spring Harbor Laboratory Press

    Dr Kamran Karimi

  11. Xenbase: Facilitating the Use of Xenopus to Model Human Disease

    Article • Frontiers in Physiology, February 2019, Frontiers

    Dr Kamran Karimi

  12. Distinguishing Species Using GC Contents in Mixed DNA or RNA Sequences

    Article • Evolutionary Bioinformatics, January 2018, SAGE Publications

    Dr Kamran Karimi

  13. Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database

    Article • January 2018, Springer Science + Business Media

    Dr Kamran Karimi

  14. Xenbase: a genomic, epigenomic and transcriptomic model organism database

    Article • Nucleic Acids Research, October 2017, Oxford University Press (OUP)

    Dr Kamran Karimi

  15. Genome evolution in the allotetraploid frog Xenopus laevis

    Article • Nature, October 2016, Springer Science + Business Media

    Dr Kamran Karimi, Dr Jacques Robert

  16. Xenbase: Core features, data acquisition, and data processing

    Article • genesis, July 2015, Wiley

    Dr Kamran Karimi

  17. Database and Informatic Challenges in Representing Both Diploid and Tetraploid Xenopus Species in Xenbase

    Article • Cytogenetic and Genome Research, May 2015, Karger Publishers

    Dr Kamran Karimi

  18. The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud

    Article • Database, November 2014, Oxford University Press (OUP)

    Dr Kamran Karimi

  19. Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes

    Article • Nucleic Acids Research, October 2014, Oxford University Press (OUP)

    Dr Kamran Karimi

  20. Accelerating a Cloud-Based Software GNSS Receiver

    Article • International Journal of Grid and High Performance Computing, January 2014, IGI Global

    Dr Kamran Karimi

  21. Thermally assisted quantum annealing of a 16-qubit problem

    Article • Nature Communications, May 2013, Springer Science + Business Media

    Dr Kamran Karimi

  22. Importance of explicit vectorization for CPU and GPU software performance

    Article • Journal of Computational Physics, June 2011, Elsevier

    Dr Kamran Karimi

  23. Quantum annealing with manufactured spins

    Article • Nature, May 2011, Springer Science + Business Media

    Dr Kamran Karimi

  24. Investigating the performance of an adiabatic quantum optimization processor

    Article • Quantum Information Processing, February 2011, Springer Science + Business Media

    Dr Kamran Karimi

  25. Experimental investigation of an eight-qubit unit cell in a superconducting optimization processor

    Article • Physical Review B, July 2010, American Physical Society (APS)

    Dr Kamran Karimi

  26. High-performance Physics Simulations Using Multi-core CPUs and GPGPUs in a Volunteer Computing Context

    Article • The International Journal of High Performance Computing Applications, July 2010, SAGE Publications

    Dr Kamran Karimi

  27. ROBUST PARAMETER SELECTION FOR PARALLEL TEMPERING

    Article • International Journal of Modern Physics C, May 2010, World Scientific Pub Co Pte Lt

    Dr Kamran Karimi

  28. The Multi-Tree Cubing algorithm for computing iceberg cubes

    Article • Journal of Intelligent Information Systems, October 2008, Springer Science + Business Media

    Dr Kamran Karimi

  29. Using Dependence Diagrams to Summarize Decision Rule Sets

    Article • January 2008, Springer Science + Business Media

    Dr Kamran Karimi

  30. Transparent Distributed Programming under Linux

    Article • January 2006, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Kamran Karimi, Professor Mohsen Sharifi

  31. The TIMERS II Algorithm for the Discovery of Causality

    Article • January 2005, Springer Science + Business Media

    Dr Kamran Karimi

  32. Back to the Future: Changing the Direction of Time to Discover Causality

    Article • January 2003, Springer Science + Business Media

    Dr Kamran Karimi

  33. Discovering Temporal/Causal Rules: A Comparison of Methods

    Article • January 2003, Springer Science + Business Media

    Dr Kamran Karimi

  34. Distinguishing Causal and Acausal Temporal Relations

    Article • January 2003, Springer Science + Business Media

    Dr Kamran Karimi

  35. RFCT: An Association-Based Causality Miner

    Article • January 2002, Springer Science + Business Media

    Dr Kamran Karimi

  36. Discovering Temporal Rules from Temporally Ordered Data

    Article • January 2002, Springer Science + Business Media

    Dr Kamran Karimi

  37. Learning with C4.5 in a Situation Calculus Domain

    Article • January 2001, Springer Science + Business Media

    Dr Kamran Karimi

  38. A Proposal for Including Behavior in the Process of Object Similarity Assessment with Examples from Artificial Life

    Article • January 2001, Springer Science + Business Media

    Dr Kamran Karimi

  39. The Iterative Multi-agent Method for Solving Complex Search Problems

    Article • January 2000, Springer Science + Business Media

    Dr Kamran Karimi

  40. Finding Temporal Relations: Causal Bayesian Networks vs. C4.5

    Article • January 2000, Springer Science + Business Media

    Dr Kamran Karimi

  41. Logical Decision Rules: Teaching C4.5 to Speak Prolog

    Article • January 2000, Springer Science + Business Media

    Dr Kamran Karimi

  42. A proposal for self-recognition in robot programming

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Dr Kamran Karimi