All Stories

  1. A strategy for building and using a human reference pangenome

    Article • F1000Research, October 2019, Faculty of 1000, Ltd.

    Fritz Sedlazeck, Dr Bastien Llamas, Justin M Zook, Alan Cleary, Yassine Souilmi

  2. A robust benchmark for germline structural variant detection

    Article • June 2019, Cold Spring Harbor Laboratory Press

    Justin M Zook, Fritz Sedlazeck

  3. An open resource for accurately benchmarking small variant and reference calls

    Article • Nature Biotechnology, April 2019, Springer Science + Business Media

    Justin M Zook

  4. A Rigorous Interlaboratory Examination of the Need to Confirm Next-Generation Sequencing–Detected Variants with an Orthogonal Method in Clinical Genetic Testing

    Article • Journal of Molecular Diagnostics, March 2019, Elsevier

    Justin M Zook

  5. High-coverage, long-read sequencing of Han Chinese trio reference samples.

    Article • February 2019, Cold Spring Harbor Laboratory Press

    Justin M Zook

  6. genomeview - an extensible python-based genomics visualization engine

    Article • June 2018, Cold Spring Harbor Laboratory Press

    Justin M Zook

  7. A Rigorous Interlaboratory Examination of the Need to Confirm NGS-Detected Variants with an Orthogonal Method in Clinical Genetic Testing

    Article • May 2018, Cold Spring Harbor Laboratory Press

    Justin M Zook

  8. An interlaboratory study of complex variant detection

    Article • November 2017, Cold Spring Harbor Laboratory Press

    Justin M Zook

  9. Tools for annotation and comparison of structural variation

    Article • F1000Research, October 2017, Faculty of 1000, Ltd.

    Fritz Sedlazeck, Justin M Zook

  10. Challenging a bioinformatic tool’s ability to detect microbial contaminants using in silico whole genome sequencing data

    Article • PeerJ, September 2017, PeerJ

    Justin M Zook

  11. Using metagenomic methods to detect organismal contaminants in microbial materials

    Article • April 2017, PeerJ

    Justin M Zook

  12. Genome-wide reconstruction of complex structural variants using read clouds

    Article • September 2016, Cold Spring Harbor Laboratory Press

    Justin M Zook

  13. Medical implications of technical accuracy in genome sequencing

    Article • Genome Medicine, March 2016, Springer Science + Business Media

    Justin M Zook

  14. Advancing Benchmarks for Genome Sequencing

    Article • Cell Systems, September 2015, Elsevier

    Justin M Zook

  15. Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls

    Article • Nature Biotechnology, February 2014, Springer Science + Business Media

    Justin M Zook

  16. Assuring the quality of next-generation sequencing in clinical laboratory practice

    Article • Nature Biotechnology, November 2012, Springer Science + Business Media

    Justin M Zook

  17. Disentangling the effects of polymer coatings on silver nanoparticle agglomeration, dissolution, and toxicity to determine mechanisms of nanotoxicity

    Article • Journal of Nanoparticle Research, September 2012, Springer Science + Business Media

    Justin M Zook

  18. Synthetic Spike-in Standards Improve Run-Specific Systematic Error Analysis for DNA and RNA Sequencing

    Article • PLoS ONE, July 2012, PLOS

    Justin M Zook

  19. Measuring Agglomerate Size Distribution and Dependence of Localized Surface Plasmon Resonance Absorbance on Gold Nanoparticle Agglomerate Size Using Analytical Ultracentrifugation

    Article • ACS Nano, September 2011, American Chemical Society (ACS)

    Justin M Zook

  20. Measuring silver nanoparticle dissolution in complex biological and environmental matrices using UV–visible absorbance

    Article • Analytical and Bioanalytical Chemistry, August 2011, Springer Science + Business Media

    Justin M Zook

  21. Stable nanoparticle aggregates/agglomerates of different sizes and the effect of their size on hemolytic cytotoxicity

    Article • Nanotoxicology, December 2010, Taylor & Francis

    Justin M Zook

  22. Magnetic connectors for microfluidic applications

    Article • Lab on a Chip, January 2010, Royal Society of Chemistry

    Javier Atencia, Justin M Zook

  23. Interpretation of chronopotentiometric transients of ion-selective membranes with two transition times

    Article • Journal of Electroanalytical Chemistry, January 2010, Elsevier

    Dr Erno Lindner, Justin M Zook

  24. Effects of temperature, acyl chain length, and flow-rate ratio on liposome formation and size in a microfluidic hydrodynamic focusing device

    Article • Soft Matter, January 2010, Royal Society of Chemistry

    Justin M Zook

  25. Assessment of Ion-Ionophore Complex Diffusion Coefficients in Solvent Polymeric Membranes

    Article • Electroanalysis, September 2009, Wiley

    Justin M Zook

  26. Reverse Current Pulse Method To Restore Uniform Concentration Profiles in Ion-Selective Membranes. 1. Galvanostatic Pulse Methods with Decreased Cycle Time

    Article • Analytical Chemistry, July 2009, American Chemical Society (ACS)

    Justin M Zook

  27. Reverse Current Pulse Method To Restore Uniform Concentration Profiles in Ion-Selective Membranes. 2. Comparison of the Efficiency of the Different Protocols

    Article • Analytical Chemistry, July 2009, American Chemical Society (ACS)

    Justin M Zook

  28. Current-polarized ion-selective membranes: The influence of plasticizer and lipophilic background electrolyte on concentration profiles, resistance, and voltage transients

    Article • Sensors and Actuators B Chemical, March 2009, Elsevier

    Dr Erno Lindner, Justin M Zook

  29. Chronopotentiometric method for the assessment of ionophore diffusion coefficients in solvent polymeric membranes

    Article • Journal of Solid State Electrochemistry, July 2008, Springer Science + Business Media

    Dr Erno Lindner, Justin M Zook

  30. Mathematical Model of Current‐Polarized Ionophore‐Based Ion‐Selective Membranes: Large Current Chronopotentiometry

    Article • Electroanalysis, January 2008, Wiley

    Dr Erno Lindner, Justin M Zook

  31. Mathematical Model of Current-Polarized Ionophore-Based Ion-Selective Membranes

    Article • The Journal of Physical Chemistry B, January 2008, American Chemical Society (ACS)

    Dr Erno Lindner, Justin M Zook

  32. Electrochemical methods for the determination of the diffusion coefficient of ionophores and ionophore–ion complexes in plasticized PVC membranes

    Article • The Analyst, January 2008, Royal Society of Chemistry

    Dr Erno Lindner, Justin M Zook

  33. Statistical analysis of fractal-based brain tumor detection algorithms

    Article • Magnetic Resonance Imaging, June 2005, Elsevier

    Justin M Zook