All Stories

  1. Exaptation of ancestral cell-identity networks enables C4 photosynthesis
  2. Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex
  3. Cell-type-specific effects of age and sex on human cortical neurons
  4. Retraction Notice to: Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers
  5. Streamlined spatial and environmental expression signatures characterize the minimalist duckweedWolffia australiana
  6. Arabidopsis transcriptome responses to low water potential using high-throughput plate assays
  7. BAllC and BAllCools: Efficient formatting and operating for Single-Cell DNA methylation data
  8. Arabidopsis transcriptome responses to low water potential using high throughput plate assays
  9. Deconvolution of polygenic risk score in single cells unravels cellular and molecular heterogeneity of complex human diseases
  10. Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex
  11. Spatial IMA1 regulation restricts root iron acquisition on MAMP perception
  12. Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
  13. Brain-wide correspondence of neuronal epigenomics and distant projections
  14. Conserved and divergent gene regulatory programs of the mammalian neocortex
  15. Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain
  16. Single-cell analysis of chromatin accessibility in the adult mouse brain
  17. Cell type-specific effects of age and sex on human cortical neurons
  18. Remembering Philip N. Benfey: A visionary pioneer in plant biology and mentor extraordinaire
  19. ​Single nuclei sequencing reveals C4 photosynthesis is based on rewiring of ancestral cell identity networks
  20. Epigenome erosion in Alzheimer's disease brain cells and induced neurons
  21. A comparative atlas of single-cell chromatin accessibility in the human brain
  22. Single-cell DNA methylation and 3D genome architecture in the human brain
  23. Author Correction: A B-ARR-mediated cytokinin transcriptional network directs hormone cross-regulation and shoot development
  24. BAllC and BAllCools: Efficient Formatting and Operating for Single-Cell DNA Methylation Data
  25. Yet uninfected? Resolving cell states of plants under pathogen attack
  26. Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes
  27. A guide to the BRAIN Initiative Cell Census Network data ecosystem
  28. Human Immune Cell Epigenomic Signatures in Response to Infectious Diseases and Chemical Exposures
  29. Multiplexed single-cell 3D spatial gene expression analysis in plant tissue using PHYTOMap
  30. Brain-wide Correspondence Between Neuronal Epigenomics and Long-Distance Projections
  31. Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain
  32. Time-resolved single-cell and spatial gene regulatory atlas of plants under pathogen attack
  33. Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex
  34. A Single-Nucleus Atlas of Seed-to-Seed Development in Arabidopsis
  35. Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways
  36. Stress Recovery Triggers Rapid Transcriptional Reprogramming and Activation of Immunity in Plants
  37. Mimicking genuine drought responses using a high throughput plate assay
  38. Mimicking genuine drought responses using a high throughput plate assay
  39. Author Correction: CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping
  40. Author Correction: PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants
  41. Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures
  42. Mimicking genuine drought responses using a high throughput plate assay
  43. A comparative atlas of single-cell chromatin accessibility in the human brain
  44. The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
  45. Epigenomic and chromosomal architectural reconfiguration in developing human frontal cortex and hippocampus
  46. Defining in vivo transcriptional responses to auxin
  47. PHYTOMap: Multiplexed single-cell 3D spatial gene expression analysis in plant tissue
  48. Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection
  49. Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3
  50. Author Correction: Perspectives on ENCODE
  51. Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
  52. Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse
  53. Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
  54. The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis
  55. The biology of time: dynamic responses of cell types to developmental, circadian, and environmental cues
  56. Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes
  57. A multimodal cell census and atlas of the mammalian primary motor cortex
  58. A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
  59. An atlas of gene regulatory elements in adult mouse cerebrum
  60. Comparative cellular analysis of motor cortex in human, marmoset and mouse
  61. DNA methylation atlas of the mouse brain at single-cell resolution
  62. Epigenomic diversity of cortical projection neurons in the mouse brain
  63. Activity-dependent modulation of synapse-regulating genes in astrocytes
  64. PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants
  65. A plant-specific syntaxin-6 protein contributes to the intracytoplasmic route for the begomovirus CabLCV
  66. Single nucleus multi-omics regulatory landscape of the murine pituitary
  67. Iterative single-cell multi-omic integration using online learning
  68. Comprehensive analysis of single cell ATAC-seq data with SnapATAC
  69. The emergence of the brain non-CpG methylation system in vertebrates
  70. Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development
  71. Activity-Dependent Modulation of Synapse-Regulating Genes in Astrocytes
  72. Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control
  73. A multimodal cell census and atlas of the mammalian primary motor cortex
  74. Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development
  75. An atlas of dynamic chromatin landscapes in mouse fetal development
  76. Expanded encyclopaedias of DNA elements in the human and mouse genomes
  77. Perspectives on ENCODE
  78. Spatiotemporal DNA methylome dynamics of the developing mouse fetus
  79. Publisher Correction: Integrated multi-omics framework of the plant response to jasmonic acid
  80. Pluripotent stem cells with low differentiation potential contain incompletely reprogrammed DNA replication
  81. Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population
  82. Current status of the multinational Arabidopsis community
  83. Single nucleus multi-omics regulatory atlas of the murine pituitary
  84. A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice
  85. An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum
  86. Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain
  87. Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse
  88. Genome and time-of-day transcriptome ofWolffia australianalink morphological extreme minimization with un-gated plant growth
  89. Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome
  90. An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
  91. Integrated multi-omics framework of the plant response to jasmonic acid
  92. Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism
  93. A plant-specific syntaxin-6 protein contributes to the intracytoplasmic route for begomoviruses
  94. The JA‐pathway MYC transcription factors regulate photomorphogenic responses by targeting HY5 gene expression
  95. Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana
  96. Dnmt3aknockout in excitatory neurons impairs postnatal synapse maturation and is partly compensated by repressive histone modification H3K27me3
  97. Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants
  98. PHYTOCHROME INTERACTING FACTORs Trigger Environmentally Responsive Chromatin Dynamics
  99. A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels
  100. Common alleles of CMT2 and NRPE1 are major determinants of de novo DNA methylation variation in Arabidopsis thaliana
  101. Loss of Dnmt3a dependent methylation in inhibitory neurons impairs neural function through a mechanism that impacts Rett syndrome
  102. Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers
  103. Simultaneous profiling of 3D genome structure and DNA methylation in single human cells
  104. Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels
  105. Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid
  106. Epigenetic silencing of a multifunctional plant stress regulator
  107. Robust single-cell Hi-C clustering by convolution- and random-walk–based imputation
  108. SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq
  109. Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels
  110. WITHDRAWN: Genomic decoding of neuronal depolarization by stimulus-specific NPAS4 heterodimers
  111. The complex architecture and epigenomic impact of plant T-DNA insertions
  112. Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons
  113. Diversity and dynamics of DNA methylation: epigenomic resources and tools for crop breeding
  114. HiCluster: A Robust Single-Cell Hi-C Clustering Method Based on Convolution and Random Walk
  115. Single-cell multi-omic profiling of chromatin conformation and DNA methylome
  116. OGT binds a conserved C-terminal domain of TET1 to regulate TET1 activity and function in development
  117. Multi-omic profiling of transcriptome and DNA methylome in single nuclei with molecular partitioning
  118. Dynamic DNA methylation: In the right place at the right time
  119. Robust single-cell DNA methylome profiling with snmC-seq2
  120. Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
  121. Profiling Interactome Networks with the HaloTag-NAPPA In Situ Protein Array
  122. Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons
  123. Author Correction: A B-ARR-mediated cytokinin transcriptional network directs hormone cross-regulation and shoot development
  124. A B-ARR-mediated cytokinin transcriptional network directs hormone cross-regulation and shoot development
  125. Robust single-cell DNA methylome profiling with snmC-seq2
  126. The complex architecture of plant transgene insertions
  127. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
  128. Challenges and recommendations for epigenomics in precision health
  129. Piecing together cis -regulatory networks: insights from epigenomics studies in plants
  130. The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas
  131. Dynamic DNA methylation reconfiguration during seed development and germination
  132. Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
  133. Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus
  134. Systematic mapping of chromatin state landscapes during mouse development
  135. Mapping genome-wide transcription-factor binding sites using DAP-seq
  136. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping
  137. Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection
  138. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
  139. Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain
  140. Improved regulatory element prediction based on tissue-specific local epigenomic signatures
  141. Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation
  142. Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors
  143. Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs
  144. Functional Human Oocytes Generated by Transfer of Polar Body Genomes
  145. JAZ2 controls stomata dynamics during bacterial invasion
  146. Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain
  147. A transcription factor hierarchy defines an environmental stress response network
  148. Phased diploid genome assembly with single-molecule real-time sequencing
  149. EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling
  150. Molecular Criteria for Defining the Naive Human Pluripotent State
  151. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
  152. Integration of omic networks in a developmental atlas of maize
  153. 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
  154. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
  155. A signaling pathway complementary to the core known ABA signaling conected to JA signaling
  156. TF-interactome by HaloTag protein arrays
  157. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
  158. Unique cell-type-specific patterns of DNA methylation in the root meristem
  159. INTRODUCTION
  160. The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram
  161. Epigenomic landscapes of retinal rods and cones
  162. A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants
  163. Active DNA demethylation at enhancers during the vertebrate phylotypic period
  164. Mobile small RNAs regulate genome-wide DNA methylation
  165. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light
  166. Human DNA methylomes of neurodegenerative diseases show common epigenomic patterns
  167. Erratum: Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation
  168. methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data
  169. DNA Methylation on non-canonical context
  170. Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis
  171. Exceptional epigenetics in the brain
  172. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain
  173. Human body epigenome maps reveal noncanonical DNA methylation variation
  174. An alternative pluripotent state confers interspecies chimaeric competency
  175. ERRs Mediate a Metabolic Switch Required for Somatic Cell Reprogramming to Pluripotency
  176. MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing
  177. Chromatin architecture reorganization during stem cell differentiation
  178. Integrative analysis of 111 reference human epigenomes
  179. Integrative analysis of haplotype-resolved epigenomes across human tissues
  180. A User’s Guide to the Arabidopsis T-DNA Insertion Mutant Collections
  181. Comparison of the transcriptional landscapes between human and mouse tissues
  182. Erratum: Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
  183. The Developmental Potential of iPSCs Is Greatly Influenced by Reprogramming Factor Selection
  184. Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
  185. Convergent Targeting of a Common Host Protein-Network by Pathogen Effectors from Three Kingdoms of Life
  186. Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways
  187. The Arabidopsis 14-3-3 Protein RARE COLD INDUCIBLE 1A Links Low-Temperature Response and Ethylene Biosynthesis to Regulate Freezing Tolerance and Cold Acclimation
  188. DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis
  189. Abnormalities in human pluripotent cells due to reprogramming mechanisms
  190. Genotypic variation of gene expression during the soybean innate immunity response
  191. A Genome-Scale Resource for the Functional Characterization of Arabidopsis Transcription Factors
  192. CG hypomethylation in Lsh −/− mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity
  193. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells
  194. Solving nonlinear principal-agent problems using bilevel programming
  195. Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis
  196. STAR: an integrated solution to management and visualization of sequencing data
  197. Response to Perspective
  198. Constructing Hepitypes: Phasing Local Genotype and DNA Methylation
  199. Arabidopsis Basic Helix-Loop-Helix Transcription Factors MYC2, MYC3, and MYC4 Regulate Glucosinolate Biosynthesis, Insect Performance, and Feeding Behavior
  200. Global Epigenomic Reconfiguration During Mammalian Brain Development
  201. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
  202. Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
  203. Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells
  204. Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response
  205. Patterns of population epigenomic diversity
  206. Epigenetic trigger for tomato ripening
  207. ‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes
  208. Circadian Oscillations of Protein-Coding and Regulatory RNAs in a Highly Dynamic Mammalian Liver Epigenome
  209. A Blueprint for an International Cancer Epigenome Consortium. A Report from the AACR Cancer Epigenome Task Force
  210. Sigma factor‐mediated plastid retrograde signals control nuclear gene expression
  211. ENCODE explained
  212. Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas
  213. Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome
  214. Widespread dynamic DNA methylation in response to biotic stress
  215. Release Factor One Is Nonessential in Escherichia coli
  216. Detection of allele-specific methylation through a generalized heterogeneous epigenome model
  217. Reading the Second Code: Mapping Epigenomes to Understand Plant Growth, Development, and Adaptation to the Environment
  218. Linking photoreceptor excitation to changes in plant architecture
  219. Surveillance of 3′ Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis
  220. Epigenetic and epigenomic variation in Arabidopsis thaliana
  221. Epiallelic Variation in Arabidopsis thaliana
  222. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
  223. Forward and Reverse Genetics through Derivation of Haploid Mouse Embryonic Stem Cells
  224. Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of theArabidopsisTranscriptome
  225. RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites
  226. Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants
  227. Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network
  228. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
  229. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
  230. The DNA methylome
  231. The NIH Roadmap Epigenomics Mapping Consortium
  232. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
  233. Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1
  234. Ethylene-Induced Stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 Is Mediated by Proteasomal Degradation of EIN3 Binding F-Box 1 and 2 That Requires EIN2 in Arabidopsis
  235. Zeroing in on DNA methylomes with no BS
  236. Distinct Epigenomic Landscapes of Pluripotent and Lineage-Committed Human Cells
  237. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
  238. Linking genotype to phenotype using the Arabidopsis unimutant collection
  239. Two Plant Viral Suppressors of Silencing Require the Ethylene-Inducible Host Transcription Factor RAV2 to Block RNA Silencing
  240. Ethylene Responses in Seedling Growth and Development
  241. Addendum: Literature-curated protein interaction datasets
  242. Human DNA methylomes at base resolution show widespread epigenomic differences
  243. A Combinatorial Interplay Among the 1-Aminocyclopropane-1-Carboxylate Isoforms Regulates Ethylene Biosynthesis in Arabidopsis thaliana
  244. Rapid and High-Throughput pan-Orthopoxvirus Detection and Identification using PCR and Mass Spectrometry
  245. Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein
  246. A Family of Bacterial Cysteine Protease Type III Effectors Utilizes Acylation-dependent and -independent Strategies to Localize to Plasma Membranes
  247. Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond
  248. Finding the fifth base: Genome-wide sequencing of cytosine methylation
  249. Phosphoproteomic analysis of ethylene‐regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two‐dimensional separations coupled with a hybrid quadrupole time‐of‐flight mass spectrometer
  250. Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis
  251. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays
  252. Literature-curated protein interaction datasets
  253. Solving Bilevel Linear Programs Using Multiple Objective Linear Programming
  254. Correction
  255. A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development
  256. Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
  257. Utilizing tiling microarrays for whole‐genome analysis in plants
  258. Potential Sites of Bioactive Gibberellin Production during Reproductive Growth in Arabidopsis
  259. The Arabidopsis Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels
  260. Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome
  261. An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome
  262. Direct broad-range detection of alphaviruses in mosquito extracts
  263. Mapping the genome landscape using tiling array technology
  264. Recombination and linkage disequilibrium in Arabidopsis thaliana
  265. A WD40 Domain Cyclophilin Interacts with Histone H3 and Functions in Gene Repression and Organogenesis in Arabidopsis
  266. The phosphatase laforin crosses evolutionary boundaries and links carbohydrate metabolism to neuronal disease
  267. Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
  268. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana
  269. Higher plants possess two different types of ATX1-like copper chaperones
  270. Small RNA-mediated chromatin silencing directed to the 3′ region of the Arabidopsis gene encoding the developmental regulator, FLC
  271. The Ibis T5000 Universal Biosensor: An Automated Platform for Pathogen Identification and Strain Typing
  272. Localization of Iron in Arabidopsis Seed Requires the Vacuolar Membrane Transporter VIT1
  273. The Arabidopsis Histidine Phosphotransfer Proteins Are Redundant Positive Regulators of Cytokinin Signaling
  274. The POLARIS Peptide of Arabidopsis Regulates Auxin Transport and Root Growth via Effects on Ethylene Signaling
  275. CDPKs CPK6 and CPK3 Function in ABA Regulation of Guard Cell S-Type Anion- and Ca2+- Permeable Channels and Stomatal Closure
  276. ETHYLENE-INSENSITIVE5 encodes a 5′→3′ exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2
  277. Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis
  278. The ACC synthase TOE sequence is required for interaction with ETO1 family proteins and destabilization of target proteins
  279. Identification of Acinetobacter Species and Genotyping of Acinetobacter baumannii by Multilocus PCR and Mass Spectrometry
  280. HIV Integration Site Selection: Targeting in Macrophages and the Effects of Different Routes of Viral Entry
  281. RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis
  282. PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism
  283. Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection
  284. Downregulation of ClpR2 Leads to Reduced Accumulation of the ClpPRS Protease Complex and Defects in Chloroplast Biogenesis in Arabidopsis
  285. Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis
  286. Integration Site Selection by HIV-Based Vectors in Dividing and Growth-Arrested IMR-90 Lung Fibroblasts
  287. The Arabidopsis heavy metal P‐type ATPase HMA5 interacts with metallochaperones and functions in copper detoxification of roots
  288. A role for LEDGF/p75 in targeting HIV DNA integration
  289. Functional Genomic Analysis of the AUXIN/INDOLE-3-ACETIC ACID Gene Family Members in Arabidopsis thaliana
  290. Multiple Type-B Response Regulators Mediate Cytokinin Signal Transduction in Arabidopsis
  291. Molecular and Genetic Analysis of Hormone-Regulated Differential Cell Elongation in Arabidopsis
  292. Integration Targeting by Avian Sarcoma-Leukosis Virus and Human Immunodeficiency Virus in the Chicken Genome
  293. Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation
  294. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms
  295. NPH4/ARF7 and ARF19 promote leaf expansion and auxin‐induced lateral root formation
  296. Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription
  297. Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance
  298. FRIGIDA-Independent Variation in Flowering Time of Natural Arabidopsis thaliana Accessions
  299. Rapid Array Mapping of Circadian Clock and Developmental Mutations in Arabidopsis
  300. Corrigendum to ‘‘Applications of DNA tiling arrays for whole-genome analysis’’ [Genomics 85 (2005) 1–15]
  301. Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues
  302. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation
  303. Phytochrome-Specific Type 5 Phosphatase Controls Light Signal Flux by Enhancing Phytochrome Stability and Affinity for a Signal Transducer
  304. Functional Genomic Analysis of the AUXIN RESPONSE FACTOR Gene Family Members in Arabidopsis thaliana: Unique and Overlapping Functions of ARF7 and ARF19
  305. Applications of DNA tiling arrays for whole-genome analysis
  306. Class III Homeodomain-Leucine Zipper Gene Family Members Have Overlapping, Antagonistic, and Distinct Roles in Arabidopsis Development
  307. An Arabidopsis NPR1‐like gene, NPR4, is required for disease resistance
  308. Reentry of the Ethylene MPK6 Module
  309. The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development
  310. Short-Term Growth Responses to Ethylene in Arabidopsis Seedlings Are EIN3/EIL1 Independent
  311. The Central Role of PhEIN2 in Ethylene Responses throughout Plant Development in Petunia
  312. PLANT GENOMICS: The Third Wave
  313. Retroviral DNA Integration: ASLV, HIV, and MLV Show Distinct Target Site Preferences
  314. Regulation of flowering time in Arabidopsis by K homology domain proteins
  315. Convergence of Signaling Pathways in the Control of Differential Cell Growth in Arabidopsis
  316. Flagellin Is Not a Major Defense Elicitor in Ralstonia solanacearum Cells or Extracts Applied to Arabidopsis thaliana
  317. DELLA Proteins and Gibberellin-Regulated Seed Germination and Floral Development in Arabidopsis
  318. GCR1 Can Act Independently of Heterotrimeric G-Protein in Response to Brassinosteroids and Gibberellins in Arabidopsis Seed Germination
  319. Light-Response Quantitative Trait Loci Identified with Composite Interval and eXtreme Array Mapping inArabidopsis thaliana
  320. A Homolog of Prokaryotic Thiol Disulfide Transporter CcdA Is Required for the Assembly of the Cytochromeb6fComplex inArabidopsisChloroplasts
  321. Regulation of ethylene gas biosynthesis by the Arabidopsis ETO1 protein
  322. Genome studies and molecular genetics
  323. CBF2/DREB1C is a negative regulator ofCBF1/DREB1BandCBF3/DREB1Aexpression and plays a central role in stress tolerance inArabidopsis
  324. Type-A Arabidopsis Response Regulators Are Partially Redundant Negative Regulators of Cytokinin Signaling
  325. The ethylene signaling pathway: new insights
  326. Corrections
  327. Plant Responses to Ethylene Gas Are Mediated by SCFEBF1/EBF2-Dependent Proteolysis of EIN3 Transcription Factor
  328. A Growth Regulatory Loop That Provides Homeostasis to Phytochrome A Signaling
  329. Mutations in the Ca2+/H+ Transporter CAX1 Increase CBF/DREB1 Expression and the Cold-Acclimation Response in Arabidopsis
  330. Enhanced Fitness Conferred by Naturally Occurring Variation in the Circadian Clock
  331. Extractions
  332. Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome
  333. Isolation and Characterization of phyC Mutants in Arabidopsis Reveals Complex Crosstalk between Phytochrome Signaling Pathways
  334. Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana
  335. A Reevaluation of the Role of the Heterotrimeric G Protein in Coupling Light Responses in Arabidopsis
  336. Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis
  337. GUN4, a Regulator of Chlorophyll Synthesis and Intracellular Signaling
  338. Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance
  339. The β-Subunit of the Arabidopsis G Protein Negatively Regulates Auxin-Induced Cell Division and Affects Multiple Developmental Processes
  340. Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX
  341. ABA-Activated SnRK2 Protein Kinase is Required for Dehydration Stress Signaling in Arabidopsis
  342. Molecular and Genetic Analysis of Hormone-Regulated Differential Cell Elongation in Arabidopsis
  343. Divergent perspectives on GM food
  344. Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3
  345. De-Etiolated 1 and Damaged DNA Binding Protein 1 Interact to Regulate Arabidopsis Photomorphogenesis
  346. HIV-1 Integration in the Human Genome Favors Active Genes and Local Hotspots
  347. A Role for Peroxisomes in Photomorphogenesis and Development of Arabidopsis
  348. Mitogen-activated protein kinase cascades in plants: a new nomenclature
  349. NPSN11 Is a Cell Plate-Associated SNARE Protein That Interacts with the Syntaxin KNOLLE
  350. Ethylene Biosynthesis and Signaling Networks
  351. An application of nonlinear optimization in molecular biology
  352. Phototropin-related NPL1 controls chloroplast relocation induced by blue light
  353. An Arabidopsis circadian clock component interacts with both CRY1 and phyB
  354. The Ethylene Pathway: A Paradigm for Plant Hormone Signaling and Interaction
  355. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
  356. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
  357. Ethylene signaling: from mutants to molecules
  358. National Science Foundation-Sponsored Workshop Report: “The 2010 Project”Functional Genomics and the Virtual Plant. A Blueprint for Understanding How Plants Are Built and How to Improve Them
  359. Involvement of NRAMP1 from Arabidopsis thaliana in iron transport
  360. A complete BAC-based physical map of the Arabidopsis thaliana genome
  361. EIN2, a Bifunctional Transducer of Ethylene and Stress Responses in Arabidopsis
  362. RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson Disease–Related Copper Transporter, Is Required for Ethylene Signaling in Arabidopsis
  363. THE ETHYLENE GAS SIGNAL TRANSDUCTION PATHWAY: A Molecular Perspective
  364. Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1
  365. Arabidopsis Homologs of a c-Jun Coactivator Are Present Both in Monomeric Form and in the COP9 Complex, and Their Abundance Is Differentially Affected by the Pleiotropic cop/det/fus Mutations
  366. Arabidopsis Homologs of a c-Jun Coactivator Are Present Both in Monomeric Form and in the COP9 Complex, and Their Abundance Is Differentially Affected by the Pleiotropic cop/det/fus Mutations
  367. Ethylene gas: perception, signaling and response
  368. Cell signalling and gene regulation: piecing the puzzle together
  369. EIN4 and ERS2 Are Members of the Putative Ethylene Receptor Gene Family in Arabidopsis
  370. EIN4 and ERS2 Are Members of the Putative Ethylene Receptor Gene Family in Arabidopsis
  371. Ethylene signaling in Arabidopsis: Events from the membrane to the nucleus
  372. Genes blossom from a weed
  373. BRI-ghtening the Pathway to Steroid Hormone Signaling Events in Plants
  374. Activation of the Ethylene Gas Response Pathway in Arabidopsis by the Nuclear Protein ETHYLENE-INSENSITIVE3 and Related Proteins
  375. Signaling in plants
  376. HOOKLESS1, an Ethylene Response Gene, Is Required for Differential Cell Elongation in the Arabidopsis Hypocotyl
  377. The genome of Arabidopsis thaliana.
  378. Genetic analysis of a seedling stress response to ethylene in Arabidopsis
  379. The ethylene signal transduction pathway in plants
  380. Optimizing a linear function over an efficient set
  381. Assignment of 30 Microsatellite Loci to the Linkage Map of Arabidopsis
  382. Molecular and Genetic Analysis of the Constitutive Ethylene Response Mutation Ctr1
  383. Ethylene gas: it's not just for ripening any more!
  384. Mutant analysis as an experimental approach towards understanding plant hormone action
  385. CTR1, a negative regulator of the ethylene response pathway in arabidopsis, encodes a member of the Raf family of protein kinases
  386. Genetic and physical linkage of the Arabidopsis genome: Methods for anchoring Yeast Artificial Chromosomes
  387. Disease Development in Ethylene-InsensitiveArabidopsis thalianaInfected with Virulent and AvirulentPseudomonasandXanthomonasPathogens
  388. Genome mapping with anchored clones: Theoretical aspects
  389. Highly enantioselective epoxidation catalysts derived from 1,2-diaminocyclohexane
  390. PFGE and YAC analysis of the Arabidopsis genome
  391. Exploiting the Triple Response of Arabidopsis to Identify Ethylene-Related Mutants
  392. Exploiting the triple response of Arabidopsis to identify ethylene-related mutants.
  393. Chromosomal mapping of the ubiquitin gene family in Saccharomyces cerevisiae by pulsed field gel electrophoresis
  394. A numerical investigation of rank-two ellipsoid algorithms for nonlinear programming
  395. Development of large DNA methods for plants: molecular cloning of large segments of Arabidopsis and carrot DNA into yeast
  396. Inhibition of gene expression in plant cells by expression of antisense RNA
  397. A Computational Comparison of the Ellipsoid Algorithm with Several Nonlinear Programming Algorithms
  398. The ellipsoid algorithm: A new method for feedback gain optimization
  399. A class of rank-two ellipsoid algorithms for convex programming
  400. Comparison of a special-purpose algorithm with general-purpose algorithms for solving geometric programming problems
  401. Variation in the Structure of Varicella-Zoster Virus DNA
  402. DNA MAPPING OF PAIRED VARICELLA-ZOSTER VIRUS ISOLATES FROM PATIENTS WITH SHINGLES
  403. Maximizing Restitution for Erroneous Medical Payments When Auditing Samples from More Than One Provider
  404. VARICELLA-ZOSTER VIRUS RNA IN HUMAN TRIGEMINAL GANGLIA
  405. An ellipsoid algorithm for nonlinear programming
  406. A reduced gradient method for quadratic programs with quadratic constraints and lp-constrained lp-approximation problems
  407. Varicella zoster virus DNA exists as two isomers.
  408. Varicella-zoster virus vaccine DNA differs from the parental virus DNA
  409. Variables that may influence the alkaline sedimentation pattern of herpes simplex virus DNA
  410. Selecting Subsets from the Set of Nondominated Vectors in Multiple Objective Linear Programming
  411. Analysis of interruptions in the phosphodiester backbone of herpes simplex virus DNA
  412. Reversed geometric programming: A branch-and-bound method involving linear subproblems
  413. Generating all maximal efficient faces for multiple objective linear programs
  414. Finding all efficient extreme points for multiple objective linear programs
  415. A modified reduced gradient method for dual posynomial programming
  416. On Computing an Initial Efficient Extreme Point
  417. Optimal design of a dry-type natural-draft cooling tower by geometric programming
  418. COMPUTATIONAL ASPECTS OF GEOMETRIC PROGRAMMING 3. SOME PRIMAL AND DUAL ALGORITHMS FOR POSYNOMIAL AND SIGNOMIAL GEOMETRIC PROGRAMS
  419. An Easy Primal Method for Geometric Programming
  420. OPTIMAL SELECTION OF STEAM TURBINE EXHAUST ANNULUS AND CONDENSER SIZES BY GEOMETRIC PROGRAMMING
  421. Finding efficient points for linear multiple objective programs
  422. A Dual Method for Quadratic Programs with Quadratic Constraints
  423. Effects of response set and psychological knowledge on answers to the personal orientation inventory
  424. A modified concave simplex algorithm for geometric programming
  425. A Geometric Programming Model for Optimal Allocation of Stream Dissolved Oxygen
  426. Decomposition in separable geometric programming
  427. Geometric Programing and the Preliminary Design of Industrial Waste Treatment Plants
  428. Geometric programming: Duality in quadratic programming and lp-approximation III (degenerate programs)
  429. Abstract
  430. Using the Computer Algebra System MAPLE to Learn and Do Calculus