All Stories

  1. Antibacterial activity of two newly isolated Bdellovibrio bacteriovorus strains on Salmonella enterica serovars of food safety concern

    Article • Microbiology Spectrum, October 2025, ASM Journals

    PHD Jonathan G Frye

  2. In vitro synergistic effects of peracetic acid and biocides approved for use in poultry meat processing against four serotypes of non-typhoidal Salmonella enterica

    Article • Microbiology Spectrum, October 2025, ASM Journals

    PHD Jonathan G Frye

  3. Antimicrobial Resistance Genotypes and Mobile Genetic Elements of Poultry-Derived Escherichia coli: A Retrospective Genomic Study from the United States

    Article • Pathogens, July 2025, MDPI AG

    PHD Jonathan G Frye

  4. Agriculturally Sourced Multidrug-Resistant Escherichia coli for Use as Control Strains

    Article • Pathogens, April 2025, MDPI AG

    PHD Jonathan G Frye

  5. Comparative Genomic Profiles of Salmonella Typhimurium and Salmonella Dublin Bovine Isolates from the U.S. Indicate Possible Factors Associated with the Host Adaptation of Salmonella Dublin in the Region

    Article • Microorganisms, April 2025, MDPI AG

    PHD Jonathan G Frye

  6. Infection biology of Salmonella enterica

    Article • EcoSal Plus, December 2024, ASM Journals

    PHD Jonathan G Frye

  7. Genome analysis of Salmonella enterica serovar enteritis strains isolated from poultry and humans in Burkina Faso

    Article • Microbiology Resource Announcements, June 2024, ASM Journals

    PHD Jonathan G Frye

  8. An analysis of culture-based methods used for the detection and isolation of Salmonella spp., Escherichia coli, and Enterococcus spp. from surface water: A systematic review

    Article • The Science of The Total Environment, June 2024, Elsevier

    PHD Jonathan G Frye

  9. A one health approach for monitoring antimicrobial resistance: developing a national freshwater pilot effort

    Article • Frontiers in Water, May 2024, Frontiers

    PHD Jonathan G Frye

  10. A comparison of methods to detect low levels of Salmonella enterica in surface waters to support antimicrobial resistance surveillance efforts performed in multiple laboratories

    Article • The Science of The Total Environment, December 2023, Elsevier

    PHD Jonathan G Frye

  11. Tulathromycin metaphylaxis increases nasopharyngeal isolation of multidrug resistant Mannheimia haemolytica in stocker heifers

    Article • Frontiers in Veterinary Science, November 2023, Frontiers

    PHD Jonathan G Frye

  12. Distribution of Antibiotic Resistance in a Mixed-Use Watershed and the Impact of Wastewater Treatment Plants on Antibiotic Resistance in Surface Water

    Article • Antibiotics, November 2023, MDPI AG

    PHD Jonathan G Frye

  13. Use of automated capillary immunoassays for quantification of antibodies in chicken sera against recombinant Salmonella enterica serotype Heidelberg proteins

    Article • Journal of Microbiological Methods, August 2023, Elsevier

    PHD Jonathan G Frye

  14. Polymerase chain reaction for the in vitro detection of the pESI plasmid associated with the globally circulating Salmonella Infantis outbreak strain

    Article • Letters in Applied Microbiology, July 2023, Oxford University Press (OUP)

    PHD Jonathan G Frye

  15. Filter sterilized carcass rinsate for recovery of Salmonella species with various concentrations of cetylpyridinium chloride

    Article • Food Science & Nutrition, June 2023, Wiley

    PHD Jonathan G Frye

  16. Whole-genome sequencing of Listeria innocua recovered from retail milk and dairy products in Egypt

    Article • Frontiers in Microbiology, May 2023, Frontiers

    PHD Jonathan G Frye

  17. Freshwater environment as a reservoir of extended-spectrum β-lactamase-producing Enterobacteriaceae

    Article • Journal of Applied Microbiology, February 2023, Oxford University Press (OUP)

    PHD Jonathan G Frye

  18. Buffered Peptone Water Formulation Does Not Influence Growth of pESI-positive Salmonella enterica Serovar Infantis

    Article • Journal of Food Protection, February 2023, Elsevier

    PHD Jonathan G Frye

  19. Non-point source fecal contamination from aging wastewater infrastructure is a primary driver of antibiotic resistance in surface waters

    Article • Water Research, August 2022, Elsevier

    PHD Jonathan G Frye

  20. Increased Prevalence of Salmonella Infantis Isolated from Raw Chicken and Turkey Products in the United States Is Due to a Single Clonal Lineage Carrying the pESI Plasmid

    Article • Microorganisms, July 2022, MDPI AG

    PHD Jonathan G Frye

  21. Genomic Comparison of Conjugative Plasmids from Salmonella enterica and Escherichia coli Encoding Beta-Lactamases and Capable of Mobilizing Kanamycin Resistance Col-like Plasmids

    Article • Microorganisms, October 2021, MDPI AG

    PHD Jonathan G Frye

  22. Genome analysis of Salmonella strains isolated from imported frozen fish in Burkina Faso

    Article • Annals of Microbiology, July 2021, Springer Science + Business Media

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  23. AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

    Article • Scientific Reports, June 2021, Springer Science + Business Media

    PHD Jonathan G Frye

  24. Diversity of Plasmids and Genes Encoding Resistance to Extended-Spectrum β-Lactamase in Escherichia coli from Different Animal Sources

    Article • Microorganisms, May 2021, MDPI AG

    PHD Jonathan G Frye

  25. Serotyping of sub-Saharan Africa Salmonella strains isolated from poultry feces using multiplex PCR and whole genome sequencing

    Article • BMC Microbiology, January 2021, Springer Science + Business Media

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  26. Carriage and Gene Content Variability of the pESI-Like Plasmid Associated with Salmonella Infantis Recently Established in United States Poultry Production

    Article • Genes, December 2020, MDPI AG

    PHD Jonathan G Frye

  27. Antimicrobial interventions to reduce Salmonella and Campylobacter populations and improve shelf life of quail carcasses

    Article • Poultry Science, November 2020, Elsevier

    PHD Jonathan G Frye

  28. Evaluation of a new chromogenic agar for the detection of environmental Enterococcus

    Article • Journal of Microbiological Methods, November 2020, Elsevier

    PHD Jonathan G Frye

  29. Transferable Plasmids of Salmonella enterica Associated With Antibiotic Resistance Genes

    Article • Frontiers in Microbiology, October 2020, Frontiers

    PHD Jonathan G Frye

  30. Antimicrobial Resistance Gene Detection and Plasmid Typing Among Multidrug Resistant Enterococci Isolated from Freshwater Environment

    Article • Microorganisms, September 2020, MDPI AG

    PHD Jonathan G Frye

  31. Draft genome sequence of a blaNDM-1- and blaOXA-244-carrying multidrug-resistant Escherichia coli D-ST69 clinical isolate from Egypt

    Article • Journal of Global Antimicrobial Resistance, September 2020, Elsevier

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  32. Antimicrobial‐resistant pathogens in water

    Article • Letters in Applied Microbiology, June 2020, Wiley

    PHD Jonathan G Frye

  33. Comparison of Antimicrobial Resistance and Pan-Genome of Clinical and Non-Clinical Enterococcus cecorum from Poultry Using Whole-Genome Sequencing

    Article • Foods, May 2020, MDPI AG

    PHD Jonathan G Frye

  34. The prevalence and antimicrobial resistance phenotypes of Salmonella , Escherichia coli and Enterococcus sp. in surface water

    Article • Letters in Applied Microbiology, May 2020, Wiley

    PHD Jonathan G Frye

  35. Antimicrobial Resistance, Genetic Diversity and Multilocus Sequence Typing of Escherichia coli from Humans, Retail Chicken and Ground Beef in Egypt

    Article • Pathogens, May 2020, MDPI AG

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  36. Genomic Analysis of Multidrug-Resistant Escherichia coli from Surface Water in Northeast Georgia, United States: Presence of an ST131 Epidemic Strain Containing blaCTX-M-15 on a Phage-Like Plasmid

    Article • Microbial Drug Resistance, May 2020, Mary Ann Liebert Inc

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  37. Draft Genomic Sequences of Three Escherichia coli Sequence Type 131 Isolates (H45, H43ii, and H43iii) from Patients in Lagos, Nigeria

    Article • Microbiology Resource Announcements, April 2020, ASM Journals

    PHD Jonathan G Frye

  38. Diversity and antimicrobial resistance of Enterococcus from the Upper Oconee Watershed, Georgia

    Article • Journal of Applied Microbiology, January 2020, Wiley

    PHD Jonathan G Frye

  39. Genome Analysis of Multidrug-Resistant Escherichia coli Isolated from Poultry in Nigeria

    Article • Foodborne Pathogens and Disease, January 2020, Mary Ann Liebert Inc

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  40. A newly developed Escherichia coli isolate panel from a cross section of U.S. animal production systems reveals geographic and commodity-based differences in antibiotic resistance gene carriage

    Article • Journal of Hazardous Materials, January 2020, Elsevier

    PHD Jonathan G Frye

  41. Circulation of emerging NDM‐5‐producing Escherichia coli among humans and dogs in Egypt

    Article • Zoonoses and Public Health, December 2019, Wiley

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  42. Plasmid Replicons and β-Lactamase-Encoding Genes of Multidrug-Resistant Escherichia coli Isolated from Humans and Food Animals in Lagos, Southwest Nigeria

    Article • Microbial Drug Resistance, December 2019, Mary Ann Liebert Inc

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  43. Genomic comparison of diverse Salmonella serovars isolated from swine

    Article • PLOS One, November 2019, PLOS

    PHD Jonathan G Frye

  44. Genetic Characterization of Antimicrobial-Resistant Escherichia coli Isolated from a Mixed-Use Watershed in Northeast Georgia, USA

    Article • International Journal of Environmental Research and Public Health, October 2019, MDPI AG

    PHD Jonathan G Frye

  45. Comparison of two commercially available rapid detection methods and a conventional culture method to detect naturally occurring salmonellae on broiler carcasses

    Article • Journal of Food Safety, September 2019, Wiley

    PHD Jonathan G Frye

  46. Antimicrobial Resistance Genes, Cassettes, and Plasmids Present in Salmonella enterica Associated With United States Food Animals

    Article • Frontiers in Microbiology, April 2019, Frontiers

    PHD Jonathan G Frye

  47. Draft genome sequence of a human-associated streptogramin-resistant Staphylococcus aureus

    Article • Journal of Global Antimicrobial Resistance, March 2019, Elsevier

    PHD Jonathan G Frye

  48. An assay for determining the susceptibility of Salmonella isolates to commercial and household biocides

    Article • PLOS One, December 2018, PLOS

    PHD Jonathan G Frye

  49. Draft genome sequences of two ciprofloxacin-resistant Salmonella enterica subsp. enterica serotype Kentucky ST198 isolated from retail chicken carcasses in Egypt

    Article • Journal of Global Antimicrobial Resistance, September 2018, Elsevier

    Dr. Hazem Ramadan, PHD Jonathan G Frye

  50. Multidrug resistant Mannheimia haemolytica isolated from high-risk beef stocker cattle after antimicrobial metaphylaxis and treatment for bovine respiratory disease

    Article • Veterinary Microbiology, July 2018, Elsevier

    PHD Jonathan G Frye

  51. Prevalence and characterization of Escherichia coli isolated from the Upper Oconee Watershed in Northeast Georgia

    Article • PLOS One, May 2018, PLOS

    PHD Jonathan G Frye

  52. Whole genome sequencing of multidrug-resistant Salmonella enterica serovar Typhimurium isolated from humans and poultry in Burkina Faso

    Article • Tropical Medicine and Health, February 2018, Springer Science + Business Media

    PHD Jonathan G Frye

  53. Incidence, species and antimicrobial resistance of naturally occurringCampylobacterisolates from quail carcasses sampled in a commercial processing facility

    Article • Journal of Food Safety, January 2018, Wiley

    PHD Jonathan G Frye

  54. Draft Genome Sequences of Eight Streptogramin-Resistant Enterococcus Species Isolated from Animal and Environmental Sources in the United States

    Article • Genome Announcements, November 2017, ASM Journals

    Charlene Jackson, PHD Jonathan G Frye

  55. Draft Genome Sequence Analysis of Multidrug-Resistant Escherichia coli Strains Isolated in 2013 from Humans and Chickens in Nigeria

    Article • Genome Announcements, October 2017, ASM Journals

    Charlene Jackson, PHD Jonathan G Frye, Dr. Hazem Ramadan

  56. Gene Expression Response of Salmonella enterica Serotype Enteritidis Phage Type 8 to Subinhibitory Concentrations of the Plant-Derived Compounds Trans-Cinnamaldehyde and Eugenol

    Article • Frontiers in Microbiology, September 2017, Frontiers

    PHD Jonathan G Frye

  57. Novel DNA Binding and Regulatory Activities for σ54 (RpoN) in Salmonella enterica Serovar Typhimurium 14028s

    Article • Journal of Bacteriology, April 2017, ASM Journals

    PHD Jonathan G Frye

  58. Routes of transmission of Salmonella and Campylobacter in breeder turkeys

    Article • The Journal of Applied Poultry Research, December 2016, Elsevier

    PHD Jonathan G Frye

  59. Draft Genome Sequence ofSalmonella entericasubsp.diarizonaeSerovar 61:k:1,5,(7) Strain CRJJGF_00165 (PhylumGammaproteobacteria)

    Article • Genome Announcements, November 2016, ASM Journals

    PHD Jonathan G Frye

  60. CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

    Article • Nucleic Acids Research, October 2016, Oxford University Press (OUP)

    PHD Jonathan G Frye

  61. Prevalence and multidrug resistance of Escherichia coli from community-acquired infections in Lagos, Nigeria

    Article • The Journal of Infection in Developing Countries, September 2016, Journal of Infection in Developing Countries

    PHD Jonathan G Frye, Dr. Hazem Ramadan

  62. Draft Genome Sequence ofSalmonella entericasubsp.entericaSerovar Orion Strain CRJJGF_00093 (PhylumGammaproteobacteria)

    Article • Genome Announcements, September 2016, ASM Journals

    PHD Jonathan G Frye

  63. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Bardo Strain CRJJGF_00099 (Phylum Gammaproteobacteria )

    Article • Genome Announcements, September 2016, ASM Journals

    PHD Jonathan G Frye

  64. Draft Genome Sequence ofSalmonella entericasubsp.entericaSerovar Blockley Strain CRJJGF_00147 (PhylumGammaproteobacteria)

    Article • Genome Announcements, September 2016, ASM Journals

    PHD Jonathan G Frye

  65. Carcass orientation and drip time affect potential surface water carryover for broiler carcasses subjected to a post-chill water dip or spray 1 : Table 1.

    Article • Poultry Science, September 2016, Oxford University Press (OUP)

    PHD Jonathan G Frye

  66. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Putten Strain CRJJGF_00159 (Phylum Gammaproteobacteria )

    Article • Genome Announcements, September 2016, ASM Journals

    PHD Jonathan G Frye

  67. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Lille Strain CRJJGF_000101 (Phylum Gammaproteobacteria )

    Article • Genome Announcements, July 2016, ASM Journals

    PHD Jonathan G Frye

  68. Draft Genome Sequence ofSalmonella entericasubsp.entericaSerovar Widemarsh Strain CRJJGF_00058 (PhylumGammaproteobacteria)

    Article • Genome Announcements, July 2016, ASM Journals

    PHD Jonathan G Frye

  69. Draft Genome Sequence ofSalmonella entericasubsp.entericaSerovar Kiambu Strain CRJJGF_00061 (PhylumGammaproteobacteria)

    Article • Genome Announcements, July 2016, ASM Journals

    PHD Jonathan G Frye

  70. Detection of Salmonella Serotypes by Overnight Incubation of Entire Broiler Carcass

    Article • Journal of Food Safety, June 2016, Wiley

    PHD Jonathan G Frye

  71. Measuring Delay Discounting in Humans Using an Adjusting Amount Task

    Article • Journal of Visualized Experiments, January 2016, MyJove Corporation

    PHD Jonathan G Frye

  72. Prevalence and Antimicrobial Resistance in Escherichia coli from Food Animals in Lagos, Nigeria

    Article • Microbial Drug Resistance, June 2015, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  73. In VivoTransmission of an IncA/C Plasmid in Escherichia coli Depends on Tetracycline Concentration, and Acquisition of the Plasmid Results in a Variable Cost of Fitness

    Article • Applied and Environmental Microbiology, March 2015, ASM Journals

    PHD Jonathan G Frye

  74. Diversity of Plasmids and Antimicrobial Resistance Genes in Multidrug-ResistantEscherichia coliIsolated from Healthy Companion Animals

    Article • Zoonoses and Public Health, February 2015, Wiley

    Charlene Jackson, PHD Jonathan G Frye

  75. Antimicrobial resistance, virulence determinants and genetic profiles of clinical and nonclinical E nterococcus cecorum from poultry

    Article • Letters in Applied Microbiology, January 2015, Wiley

    Charlene Jackson, PHD Jonathan G Frye

  76. Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages

    Article • Emerging Infectious Diseases, September 2014, Centers for Disease Control and Prevention (CDC)

    Dr Xiangyu Deng, PHD Jonathan G Frye, Martin Wiedmann Wiedmann

  77. Relative Survival of Four Serotypes of Salmonella enterica in Low–Water Activity Whey Protein Powder Held at 36 and 70°C at Various Water Activity Levels

    Article • Journal of Food Protection, July 2014, International Association for Food Protection

    PHD Jonathan G Frye

  78. Antimicrobial Resistance Genes in Multidrug-Resistant Salmonella enterica Isolated from Animals, Retail Meats, and Humans in the United States and Canada

    Article • Microbial Drug Resistance, June 2013, Mary Ann Liebert Inc

    Dr Jason P Folster, PHD Jonathan G Frye

  79. Pathogenicity of Dodecyltrimethylammonium Chloride-Resistant Salmonella enterica

    Article • Applied and Environmental Microbiology, February 2013, ASM Journals

    PHD Jonathan G Frye

  80. The intestinal fatty acid propionate inhibitsSalmonellainvasion through the post-translational control of HilD

    Article • Molecular Microbiology, January 2013, Wiley

    PHD Jonathan G Frye

  81. Genetic mechanisms of antimicrobial resistance identified in Salmonella enterica, Escherichia coli, and Enteroccocus spp. isolated from U.S. food animals

    Article • Frontiers in Microbiology, January 2013, Frontiers

    PHD Jonathan G Frye

  82. Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ54 (RpoN) regulon of Salmonella Typhimurium LT2

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    PHD Jonathan G Frye

  83. Comparison of dkgB -linked intergenic sequence ribotyping to DNA microarray hybridization for assigning serotype to Salmonella enterica

    Article • FEMS Microbiology Letters, October 2012, Oxford University Press (OUP)

    PHD Jonathan G Frye

  84. Analysis of Antimicrobial Resistance Genes Detected in Multiple-Drug-Resistant Escherichia coli Isolates from Broiler Chicken Carcasses

    Article • Microbial Drug Resistance, August 2012, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  85. Characteristics of Plasmids in Multi-Drug-Resistant Enterobacteriaceae Isolated during Prospective Surveillance of a Newly Opened Hospital in Iraq

    Article • PLOS One, July 2012, PLOS

    PHD Jonathan G Frye

  86. Analysis of Campylobacter jejuni Whole-Genome DNA Microarrays: Significance of Prophage and Hypervariable Regions for Discriminating Isolates

    Article • Foodborne Pathogens and Disease, May 2012, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  87. Gene Expression Analysis of Salmonella enterica Enteritidis Nal R and Salmonella enterica Kentucky 3795 Exposed to HCl and Acetic Acid in Rich Medium

    Article • Foodborne Pathogens and Disease, April 2012, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  88. Molecular analysis of imipenem-resistant Acinetobacter baumannii isolated from US service members wounded in Iraq, 2003–2008

    Article • Epidemiology and Infection, January 2012, Cambridge University Press

    PHD Jonathan G Frye

  89. Hydrogen-Stimulated Carbon Acquisition and Conservation in Salmonella enterica Serovar Typhimurium

    Article • Journal of Bacteriology, August 2011, ASM Journals

    PHD Jonathan G Frye

  90. Microarray-Based Analysis of IncA/C Plasmid-Associated Genes from Multidrug-Resistant Salmonella enterica

    Article • Applied and Environmental Microbiology, August 2011, ASM Journals

    PHD Jonathan G Frye

  91. Analysis of Antimicrobial Resistance Genes Detected in Multidrug-Resistant Salmonella enterica Serovar Typhimurium Isolated from Food Animals

    Article • Microbial Drug Resistance, August 2011, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  92. Characterization of Multidrug-Resistant Escherichia coli by Antimicrobial Resistance Profiles, Plasmid Replicon Typing, and Pulsed-Field Gel Electrophoresis

    Article • Microbial Drug Resistance, June 2011, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  93. Related Antimicrobial Resistance Genes Detected in Different Bacterial Species Co-isolated from Swine Fecal Samples

    Article • Foodborne Pathogens and Disease, June 2011, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  94. Sequence analysis of a group of low molecular-weight plasmids carrying multiple IS903 elements flanking a kanamycin resistance aph gene in Salmonella enterica serovars

    Article • Plasmid, May 2011, Elsevier

    PHD Jonathan G Frye

  95. An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays

    Article • BMC Bioinformatics, October 2010, Springer Science + Business Media

    PHD Jonathan G Frye

  96. Genotypic and Phenotypic Correlations of Multidrug-Resistant Acinetobacter baumannii-A. calcoaceticus Complex Strains Isolated from Patients at the National Naval Medical Center

    Article • Journal of Clinical Microbiology, August 2010, ASM Journals

    PHD Jonathan G Frye

  97. Prevalence of ColE1-Like Plasmids and Kanamycin Resistance Genes in Salmonella enterica Serovars

    Article • Applied and Environmental Microbiology, August 2010, ASM Journals

    PHD Jonathan G Frye

  98. Development of Microarray and Multiplex Polymerase Chain Reaction Assays for Identification of Serovars and Virulence Genes in Salmonella Enterica of Human or Animal Origin

    Article • Journal of Veterinary Diagnostic Investigation, July 2010, SAGE Publications

    PHD Jonathan G Frye

  99. An oligonucleotide microarray to characterize multidrug resistant plasmids

    Article • Journal of Microbiological Methods, May 2010, Elsevier

    PHD Jonathan G Frye

  100. Characterization of small ColE1-like plasmids conferring kanamycin resistance in Salmonella enterica subsp. enterica serovars Typhimurium and Newport

    Article • Plasmid, May 2010, Elsevier

    PHD Jonathan G Frye

  101. Development of a DNA Microarray to Detect Antimicrobial Resistance Genes Identified in the National Center for Biotechnology Information Database

    Article • Microbial Drug Resistance, March 2010, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  102. Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    PHD Jonathan G Frye

  103. Fitness Costs and Stability of a High-Level Ciprofloxacin Resistance Phenotype in Salmonella enterica Serotype Enteritidis: Reduced Infectivity Associated with Decreased Expression of Salmonella Pathogenicity Island 1 Genes

    Article • Antimicrobial Agents and Chemotherapy, November 2009, ASM Journals

    PHD Jonathan G Frye

  104. Sensitive and Rapid Molecular Detection Assays for Salmonella enterica Serovars Typhimurium and Heidelberg†

    Article • Journal of Food Protection, November 2009, International Association for Food Protection

    PHD Jonathan G Frye

  105. Microarray analysis of antimicrobial resistance genes inSalmonella entericafrom preharvest poultry environment

    Article • Journal of Applied Microbiology, September 2009, Wiley

    PHD Jonathan G Frye

  106. Prevalence, species distribution and antimicrobial resistance of enterococci isolated from dogs and cats in the United States

    Article • Journal of Applied Microbiology, April 2009, Wiley

    PHD Jonathan G Frye

  107. Genotyping Campylobacter jejuni by Comparative Genome Indexing: An Evaluation with Pulsed-Field Gel Electrophoresis and flaA SVR Sequencing

    Article • Foodborne Pathogens and Disease, April 2009, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  108. High-Throughput Molecular Determination of Salmonella enterica Serovars by Use of Multiplex PCR and Capillary Electrophoresis Analysis

    Article • Journal of Clinical Microbiology, March 2009, ASM Journals

    PHD Jonathan G Frye

  109. Corrigendum to “Rainfall and tillage effects on transport of fecal bacteria and sex hormones 17β-estradiol and testosterone from broiler litter applications to a Georgia Piedmont Ultisol” [Science of the Total Environment 403 (2008) 154–163]

    Article • The Science of The Total Environment, February 2009, Elsevier

    PHD Jonathan G Frye

  110. Inc A/C Plasmids Are Prevalent in Multidrug-Resistant Salmonella enterica Isolates

    Article • Applied and Environmental Microbiology, January 2009, ASM Journals

    PHD Jonathan G Frye

  111. Analysis of Salmonella enterica with Reduced Susceptibility to the Third-Generation Cephalosporin Ceftriaxone Isolated from U.S. Cattle During 2000–2004

    Article • Microbial Drug Resistance, December 2008, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  112. Presence of the KPC Carbapenemase Gene in Enterobacteriaceae Causing Bacteremia and Its Correlation with In Vitro Carbapenem Susceptibility

    Article • Journal of Clinical Microbiology, November 2008, ASM Journals

    PHD Jonathan G Frye

  113. Rapid Multiplex PCR and Real-Time TaqMan PCR Assays for Detection of Salmonella enterica and the Highly Virulent Serovars Choleraesuis and Paratyphi C

    Article • Journal of Clinical Microbiology, October 2008, ASM Journals

    PHD Jonathan G Frye

  114. Rainfall and tillage effects on transport of fecal bacteria and sex hormones 17β-estradiol and testosterone from broiler litter applications to a Georgia Piedmont Ultisol

    Article • The Science of The Total Environment, September 2008, Elsevier

    PHD Jonathan G Frye

  115. Analysis of AI-2/LuxS–Dependent Transcription in Campylobacter jejuni Strain 81-176

    Article • Foodborne Pathogens and Disease, August 2008, Mary Ann Liebert Inc

    PHD Jonathan G Frye

  116. Detection of KPC-2 in a Clinical Isolate of Proteus mirabilis and First Reported Description of Carbapenemase Resistance Caused by a KPC  -Lactamase in P. mirabilis

    Article • Journal of Clinical Microbiology, July 2008, ASM Journals

    PHD Jonathan G Frye

  117. Antimicrobial Resistance and Virulence of Enterococcus faecalis Isolated from Retail Food†

    Article • Journal of Food Protection, April 2008, International Association for Food Protection

    PHD Jonathan G Frye

  118. Evidence of a conjugal erythromycin resistance element in the Lyme disease spirochete Borrelia burgdorferi

    Article • International Journal of Antimicrobial Agents, December 2007, Elsevier

    PHD Jonathan G Frye

  119. Detection of Salmonella enterica Subpopulations by Phenotype Microarray Antibiotic Resistance Patterns

    Article • Applied and Environmental Microbiology, October 2007, ASM Journals

    PHD Jonathan G Frye

  120. Enterobacter sakazakii invades brain capillary endothelial cells, persists in human macrophages influencing cytokine secretion and induces severe brain pathology in the neonatal rat

    Article • Microbiology, October 2007, Society for General Microbiology

    PHD Jonathan G Frye

  121. Salmonella, Campylobacter and Enterococcus spp.: Their Antimicrobial Resistance Profiles and their Spatial Relationships in a Synoptic Study of the Upper Oconee River Basin

    Article • Microbial Ecology, August 2007, Springer Science + Business Media

    PHD Jonathan G Frye

  122. Prevalence, distribution and characterisation of ceftiofur resistance in Salmonella enterica isolated from animals in the USA from 1999 to 2003

    Article • International Journal of Antimicrobial Agents, August 2007, Elsevier

    PHD Jonathan G Frye

  123. Insights into the complex regulation of rpoS in Borrelia burgdorferi

    Article • Molecular Microbiology, July 2007, Wiley

    PHD Jonathan G Frye

  124. Comparison of Salmonella enterica serotype Infantis isolates from a veterinary teaching hospital

    Article • Journal of Applied Microbiology, June 2007, Wiley

    PHD Jonathan G Frye

  125. Transmission of Salmonella enterica serotype Typhimurium in poultry with and without antimicrobial selective pressure

    Article • Journal of Applied Microbiology, December 2006, Wiley

    PHD Jonathan G Frye

  126. Multiplex PCR-Based Method for Identification of Common Clinical Serotypes of Salmonella enterica subsp. enterica

    Article • Journal of Clinical Microbiology, August 2006, ASM Journals

    PHD Jonathan G Frye

  127. Salmonella enterica Serovar Typhimurium Requires the Lpf, Pef, and Tafi Fimbriae for Biofilm Formation on HEp-2 Tissue Culture Cells and Chicken Intestinal Epithelium

    Article • Infection and Immunity, June 2006, ASM Journals

    PHD Jonathan G Frye

  128. Evidence of a conjugal erythromycin resistance element in the Lyme disease spirochete Borrelia burgdorferi

    Article • International Journal of Antimicrobial Agents, May 2006, Elsevier

    PHD Jonathan G Frye

  129. Identification of New Flagellar Genes of Salmonella enterica Serovar Typhimurium

    Article • Journal of Bacteriology, March 2006, ASM Journals

    PHD Jonathan G Frye

  130. DNA microarray detection of antimicrobial resistance genes in diverse bacteria

    Article • International Journal of Antimicrobial Agents, February 2006, Elsevier

    PHD Jonathan G Frye

  131. Correlation of Phenotype with the Genotype of Egg-Contaminating Salmonella enterica Serovar Enteritidis

    Article • Applied and Environmental Microbiology, August 2005, ASM Journals

    PHD Jonathan G Frye

  132. Alternative sigma factor interactions inSalmonella: σEand σHpromote antioxidant defences by enhancing σSlevels

    Article • Molecular Microbiology, March 2005, Wiley

    Professor Ferric C Fang, PHD Jonathan G Frye

  133. Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ

    Article • Molecular Microbiology, February 2005, Wiley

    Professor Ferric C Fang, PHD Jonathan G Frye

  134. Host Gene Expression Changes and DNA Amplification during Temperate Phage Induction

    Article • Journal of Bacteriology, February 2005, ASM Journals

    PHD Jonathan G Frye

  135. Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes

    Article • Molecular Microbiology, March 2004, Wiley

    PHD Jonathan G Frye

  136. Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides

    Article • Molecular Microbiology, August 2003, Wiley

    Professor Ferric C Fang, PHD Jonathan G Frye

  137. Global regulation by CsrA in Salmonella typhimurium

    Article • Molecular Microbiology, May 2003, Wiley

    PHD Jonathan G Frye

  138. A non-redundant microarray of genes for two related bacteria

    Article • Nucleic Acids Research, April 2003, Oxford University Press (OUP)

    PHD Jonathan G Frye

  139. DNA Microarray-Based Typing of an Atypical Monophasic Salmonella enterica Serovar

    Article • Journal of Clinical Microbiology, June 2002, ASM Journals

    PHD Jonathan G Frye

  140. Increased expression of Borrelia burgdorferi vlsE in response to human endothelial cell membranes

    Article • Molecular Microbiology, December 2001, Wiley

    PHD Jonathan G Frye

  141. Identification and transcriptional analysis of a Treponema pallidum operon encoding a putative ABC transport system, an iron-activated repressor protein homolog, and a glycolytic pathway enzyme homolog

    Article • Gene, September 1997, Elsevier

    PHD Jonathan G Frye

  142. Identification, Sequences, and Expression ofTreponema pallidumChemotaxis Genes

    Article • DNA Sequence, January 1997, Taylor & Francis

    PHD Jonathan G Frye

  143. Short Communication: Identification and Sequences of theTreponema pallidum flhA, flhF, andorf 304Genes

    Article • DNA Sequence, January 1997, Taylor & Francis

    PHD Jonathan G Frye

  144. Sequences of the Salmonella typhimurium mglA and mglC genes

    Article • Gene, January 1996, Elsevier

    PHD Jonathan G Frye

  145. Expression and sequence analysis of a Treponema pallidum gene, tpn38(b), encoding an exported protein with homology to T. pallidum and Borrelia burgdorferi proteins

    Article • FEMS Microbiology Letters, January 1996, Oxford University Press (OUP)

    PHD Jonathan G Frye

  146. Identification and sequences of theTreponema pallidum mglAandmglCgenes

    Article • DNA Sequence, January 1996, Taylor & Francis

    PHD Jonathan G Frye

  147. Expression and sequence analysis of aTreponema pallidumgene,tpn38(b), encoding an exported protein with homology toT. pallidumandBorrelia burgdorferiproteins

    Article • FEMS Microbiology Letters, January 1996, Oxford University Press (OUP)

    PHD Jonathan G Frye

  148. Identification and sequences of the Treponema pallidum fliM', fli Y, fliP, fliQ, fliR and flhB' genes

    Article • Gene, December 1995, Elsevier

    PHD Jonathan G Frye

  149. Sequence of the Leptospira biflexa serovar patoc recA gene

    Article • Gene, December 1995, Elsevier

    PHD Jonathan G Frye