All Stories

  1. The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by recombination

    Article • PLoS Biology, November 2022, PLOS

    Dr Jason Stajich

  2. Draft Genome Sequences of the Antarctic Endolithic Fungi Rachicladosporium antarcticum CCFEE 5527 and Rachicladosporium sp. CCFEE 5018

    Article • Genome Announcements, July 2017, ASM Journals

    Dr Jason Stajich

  3. Evolutionary histories of soil fungi are reflected in their large-scale biogeography

    Article • Ecology Letters, June 2014, Wiley

    Dr Jason Stajich

  4. Literature-Based Gene Curation and Proposed Genetic Nomenclature for Cryptococcus

    Article • Eukaryotic Cell, May 2014, ASM Journals

    Dr Jason Stajich

  5. Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

    Article • PLoS Genetics, April 2014, PLOS

    Dr Jason Stajich, Yong-Sun Bahn

  6. Genomic Perspectives on the Fungal Kingdom

    Article • April 2014, ASM Journals

    Dr Jason Stajich

  7. Emergence of the Chytrid FungusBatrachochytrium Dendrobatidisand Global Amphibian Declines

    Article • October 2013, Wiley

    Dr Jason Stajich, Professor Matthew C Fisher

  8. MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment

    Article • The ISME Journal, October 2013, Oxford University Press (OUP)

    Jonathan Eisen, Dr Jason Stajich, Prof. Jonathan A. Eisen

  9. The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

    Article • PLoS Genetics, September 2013, PLOS

    Dr Jason Stajich

  10. Toward genome-enabled mycology

    Article • Mycologia, August 2013, Mycological Society of America

    Dr Jason Stajich

  11. Sequential Utilization of Hosts from Different Fly Families by Genetically Distinct, Sympatric Populations within the Entomophthora muscae Species Complex

    Article • PLoS ONE, August 2013, PLOS

    Dr Jason Stajich

  12. NEUROSPORAAND THE DEAD-END HYPOTHESIS: GENOMIC CONSEQUENCES OF SELFING IN THE MODEL GENUS

    Article • Evolution, August 2013, Wiley

    Dr Jason Stajich

  13. Meeting Report: Fungal ITS Workshop (October 2012)

    Article • Standards in Genomic Sciences, April 2013, Springer Science + Business Media

    Dr Jason Stajich

  14. 5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea

    Article • BMC Genomics, March 2013, Springer Science + Business Media

    Dr Jason Stajich

  15. Genomic Transition to Pathogenicity in Chytrid Fungi

    Article • PLoS Pathogens, November 2011, PLOS

    Dr Jason Stajich

  16. Cellular and Molecular Biology of Filamentous Fungi . Edited by Katherine A. Borkovich and Daniel J. Ebbole. Washington (DC): ASM Press. $209.95. xiii + 788 p.; ill.; index. ISBN: 978-1-55581-473-1. 2010.

    Article • The Quarterly Review of Biology, March 2011, University of Chicago Press

    Dr Jason Stajich

  17. Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora

    Article • Fungal Genetics and Biology, October 2010, Elsevier

    Dr Jason Stajich

  18. Analysis of the Basidiomycete Coprinopsis cinerea Reveals Conservation of the Core Meiotic Expression Program over Half a Billion Years of Evolution

    Article • PLoS Genetics, September 2010, PLOS

    Dr Jason Stajich

  19. Using the Generic Synteny Browser (GBrowse_syn)

    Article • Current Protocols in Bioinformatics, September 2010, Wiley

    Dr Jason Stajich

  20. Genome sequence of the model mushroom Schizophyllum commune

    Article • Nature Biotechnology, July 2010, Springer Science + Business Media

    Dr Jason Stajich

  21. De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis

    Article • PLoS Genetics, April 2010, PLOS

    Dr Jason Stajich

  22. The Deadly Chytrid Fungus: A Story of an Emerging Pathogen

    Article • PLoS Pathogens, January 2010, PLOS

    Dr Jason Stajich

  23. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

    Article • Genome Biology, January 2010, Springer Science + Business Media

    Dr Jason Stajich, Dr Theerapong Krajaejun

  24. The Fungi

    Article • Current Biology, September 2009, Elsevier

    Dr Jason Stajich

  25. General Biology Bioinformatics, Volume I: Data, Sequence Analysis and Evolution. Methods in Molecular Biology, Volume 452 . Edited by JonathanM.Keith. Totowa (New Jersey): Humana Press. $119.00. xii 562 p.; ill.; general index and evolution index. 9...

    Article • The Quarterly Review of Biology, September 2009, University of Chicago Press

    Dr Jason Stajich

  26. Proteomic and phenotypic profiling of the amphibian pathogenBatrachochytrium dendrobatidisshows that genotype is linked to virulence

    Article • Molecular Ecology, February 2009, Wiley

    Dr Jason Stajich, Professor Matthew C Fisher

  27. Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence

    Article • Systematic Biology, December 2008, Oxford University Press (OUP)

    Dr Jason Stajich

  28. An expanded family of fungalysin extracellular metallopeptidases of Coprinopsis cinerea

    Article • Mycological Research, March 2008, Elsevier

    Dr Jason Stajich

  29. Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans

    Article • Genome Biology, January 2008, Springer Science + Business Media

    Dr Jason Stajich

  30. Evolution of Budding Yeast Prion-determinant Sequences Across Diverse Fungi

    Article • Journal of Molecular Biology, April 2007, Elsevier

    Dr Jason Stajich

  31. Comparative genomic analysis of fungal genomes reveals intron-rich ancestors

    Article • Genome Biology, January 2007, Springer Science + Business Media

    Dr Jason Stajich

  32. The Evolution of Mammalian Gene Families

    Article • PLoS ONE, December 2006, PLOS

    Dr Jason Stajich

  33. Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus

    Article • Gene, November 2006, Elsevier

    Dr Jason Stajich

  34. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

    Article • Nature, November 2006, Springer Science + Business Media

    Dr Jason Stajich

  35. Reconstructing the early evolution of Fungi using a six-gene phylogeny

    Article • Nature, October 2006, Springer Science + Business Media

    Dr Jason Stajich

  36. The Cryptococcus neoformans Catalase Gene Family and Its Role in Antioxidant Defense

    Article • Eukaryotic Cell, September 2006, ASM Journals

    Dr Jason Stajich

  37. Evidence of mRNA-Mediated Intron Loss in the Human-Pathogenic Fungus Cryptococcus neoformans

    Article • Eukaryotic Cell, May 2006, ASM Journals

    Dr Jason Stajich

  38. Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak

    Article • October 2005

    Dr Jason Stajich

  39. Disentangling the Effects of Demography and Selection in Human History

    Article • Molecular Biology and Evolution, September 2004, Oxford University Press (OUP)

    Dr Jason Stajich

  40. The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics

    Article • PLoS Biology, November 2003, PLOS

    Dr Jason Stajich

  41. Ganglioside-induced differentiation-associated protein-1 is mutant in Charcot-Marie-Tooth disease type 4A/8q21

    Article • Nature Genetics, December 2001, Springer Science + Business Media

    Dr Jason Stajich

  42. The Bioperl project

    Article • ACM SIGBIO Newsletter, August 2000, ACM (Association for Computing Machinery)

    Dr Jason Stajich