All Stories

  1. A single-nucleus census of immune and non-immune cell types for the major immune organ systems of chicken
  2. Multiscale 3D genome organization underlies duck fatty liver with no adipose inflammation or serious injury
  3. Genetic variance components of the growth curve for Isfahan indigenous chicken
  4. A new chromosome-scale duck genome shows a major histocompatibility complex with several expanded multigene families
  5. Genomic analysis of Nigerian indigenous chickens reveals their genetic diversity and adaptation to heat-stress
  6. A chromosome-level genome assembly of a free-living white-crowned sparrow (Zonotrichia leucophrys gambelii)
  7. Selection on the promoter regions plays an important role in complex traits during duck domestication
  8. A chromosome-level genome assembly for the Silkie chicken resolves complete sequences for key chicken metabolic, reproductive, and immunity genes
  9. The ChickenGTEx pilot analysis: a reference of regulatory variants across 28 chicken tissues
  10. The Transcriptome of Chicken Migratory Primordial Germ Cells Reveals Intrinsic Sex Differences and Expression of Hallmark Germ Cell Genes
  11. RNA-Seq Profiling between Commercial and Indigenous Iranian Chickens Highlights Differences in Innate Immune Gene Expression
  12. nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing
  13. Genomics of Dwarfism in Italian Local Chicken Breeds
  14. Identification of alternative splicing events related to fatty liver formation in duck using full-length transcripts
  15. The molecular basis of differential host responses to avian influenza viruses in avian species with differing susceptibility
  16. Comparative Analysis of Different Inbred Chicken Lines Highlights How a Hereditary Inflammatory State Affects Susceptibility to Avian Influenza Virus
  17. RNAseq reveals modulation of genes involved in fatty acid biosynthesis in chicken liver according to genetic background, sex, and diet
  18. The swan genome and transcriptome, it is not all black and white
  19. In silico investigation of uncoupling protein function in avian genomes
  20. Estimation of genetic parameters for production, reproduction, and growth curve of Fars indigenous chicken
  21. Sex Differences in Response to Marek’s Disease: Mapping Quantitative Trait Loci Regions (QTLRs) to the Z Chromosome
  22. Sex Differences in Response to Marek’s Disease: Mapping Quantitative Trait Loci Regions (QTLRs) to the Z Chromosome
  23. The Role of Dendritic Cells in the Host Response to Marek’s Disease Virus (MDV) as Shown by Transcriptomic Analysis of Susceptible and Resistant Birds
  24. An Integrated Bioinformatics Approach to Identify Network-Derived Hub Genes in Starving Zebrafish
  25. Genetic variation in chicken interferon signalling pathway genes in research lines showing differential viral resistance
  26. Constraint-Based, Score-Based and Hybrid Algorithms to Construct Bayesian Gene Networks in the Bovine Transcriptome
  27. Network Meta-Analysis of Chicken Microarray Data following Avian Influenza Challenge—A Comparison of Highly and Lowly Pathogenic Strains
  28. Whole genome sequences of 234 indigenous African chickens from Ethiopia
  29. Fourth Report on Chicken Genes and Chromosomes 2022
  30. A framework for defining livestock ecotypes based on ecological modelling and exploring genomic environmental adaptation: the example of Ethiopian village chicken
  31. Heterogeneity of Early Host Response to Infection with Four Low-Pathogenic H7 Viruses with a Different Evolutionary History in the Field
  32. Parental methyl-enhanced diet and in ovo corticosterone affect first generation Japanese quail (Coturnix japonica) development, behaviour and stress response
  33. Following the Trace of HVS II Mitochondrial Region Within the Nine Iranian Ethnic Groups Based on Genetic Population Analysis
  34. Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication
  35. Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni
  36. Integrated Environmental and Genomic Analysis Reveals the Drivers of Local Adaptation in African Indigenous Chickens
  37. Avian Immunome DB: an example of a user-friendly interface for extracting genetic information
  38. Illuminating the dark side of the human transcriptome with long read transcript sequencing
  39. Mapping QTL Associated with Resistance to Avian Oncogenic Marek’s Disease Virus (MDV) Reveals Major Candidate Genes and Variants
  40. Integrated environmental and genomic analysis reveals the drivers of local adaptation in African indigenous chickens
  41. Illuminating the dark side of the human transcriptome with long read transcript sequencing
  42. Mapping QTL associated with resistance to avian oncogenic Marek’s Disease Virus (MDV) reveals major candidate genes and variants
  43. Erratum: Chakraborty, P. et al. Macrophages from Susceptible and Resistant Chicken Lines have Different Transcriptomes following Marek’s Disease Virus Infection. Genes 2019, 10, 74
  44. Diversity of endogenous avian leukosis virus subgroup E (ALVE) insertions in indigenous chickens
  45. Endogenous avian leukosis virus subgroup E elements of the chicken reference genome
  46. Illuminating the dark side of the human transcriptome with long read transcript sequencing
  47. The quail genome: insights into social behaviour, seasonal biology and infectious disease response
  48. The wild species genome ancestry of domestic chickens
  49. Full-length transcriptome sequencing from multiple tissues of duck, Anas platyrhynchos
  50. Reviving rare chicken breeds using genetically engineered sterility in surrogate host birds
  51. Illuminating the dark side of the human transcriptome with TAMA Iso-Seq analysis
  52. Functional evolution of the colony‐stimulating factor 1 receptor (CSF1R) and its ligands in birds
  53. The wild species genome ancestry of domestic chickens
  54. The quail as an avian model system: its genome provides insights into social behaviour, seasonal biology and infectious disease response
  55. Computational analysis of the evolutionarily conserved Missing In Metastasis/Metastasis Suppressor 1 gene predicts novel interactions, regulatory regions and transcriptional control
  56. Macrophages from Susceptible and Resistant Chicken Lines have Different Transcriptomes following Marek’s Disease Virus Infection
  57. Revisiting avian ‘missing’ genes from de novo assembled transcripts
  58. Origin and development of oligoadenylate synthetase immune system
  59. Mining unknown porcine protein isoforms by tissue-based map of proteome enhances the pig genome annotation
  60. Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken
  61. Molecular Mechanisms for the Adaptive Switching Between the OAS/RNase L and OASL/RIG-I Pathways in Birds and Mammals
  62. The genomic architecture of mastitis resistance in dairy sheep
  63. The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens
  64. Animal genomics and infectious disease resistance in poultry
  65. The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds
  66. A comparative analysis of host responses to avian influenza infection in ducks and chickens highlights a role for the interferon-induced transmembrane proteins in viral resistance
  67. Chicken Genes and Chromosomes 2015
  68. Characterization of the Avian Trojan Gene Family Reveals Contrasting Evolutionary Constraints
  69. The development and maintenance of the mononuclear phagocyte system of the chick is controlled by signals from the macrophage colony-stimulating factor receptor
  70. Third Report on Chicken Genes and Chromosomes 2015
  71. The Avian RNAseq Consortium: a community effort to annotate the chicken genome
  72. Comparative genomics reveals insights into avian genome evolution and adaptation
  73. Analysis of the Early Immune Response to Infection by Infectious Bursal Disease Virus in Chickens Differing in Their Resistance to the Disease
  74. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
  75. Systems Analysis of Immune Responses in Marek's Disease Virus-Infected Chickens Identifies a Gene Involved in Susceptibility and Highlights a Possible Novel Pathogenicity Mechanism
  76. Molecular evolution of the vertebrate TLR1 gene family - a complex history of gene duplication, gene conversion, positive selection and co-evolution
  77. Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
  78. Pivotal Advance: Avian colony-stimulating factor 1 (CSF-1), interleukin-34 (IL-34), and CSF-1 receptor genes and gene products
  79. Molecular immunophenotyping of lungs in naïve and vaccinated chickens early after pulmonary avian influenza A (H9N2) virus infection
  80. Integrated Immunogenomics in the Chicken: Deciphering the Immune Response to Identify Disease Resistance Genes
  81. Molecular immunophenotyping of lungs and spleens in naive and vaccinated chickens early after pulmonary avian influenza A (H9N2) virus infection
  82. Development of a chicken 5 K microarray targeted towards immune function
  83. Second report on chicken genes and chromosomes 2005
  84. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
  85. In-silico identification of chicken immune-related genes
  86. Molecular Cytogenetic Definition of the Chicken Genome: The First Complete Avian Karyotype
  87. Isolation and mapping the chicken zona pellucida genes: An insight into the evolution of orthologous genes in different species
  88. Preliminary linkage map of the Turkey ( Meleagris gallopavo ) based on microsatellite markers
  89. Mapping the ABCA4 , IMPDH2 and TIMP3 genes in chicken
  90. Chicken syndecan-4 (SDC4) maps to linkage group E32E47W24
  91. Molecular characterization of chicken syndecan-2 proteoglycan
  92. Comparative mapping of human Chromosome 19 with the chicken shows conserved synteny and gives an insight into chromosomal evolution
  93. Human Chromosomes 3 and 21 are the products of an ancestral gene arrangement that is at least 300 million years old
  94. Mapping the RAIDD gene of chicken (Gallus gallus): identification of a region homologous to the mouse high-growth region
  95. Differences in gene density on chicken macrochromosomes and microchromosomes
  96. Integration of the genetic and physical maps of the chicken macrochromosomes
  97. First report on chicken genes and chromosomes 2000
  98. The dynamics of chromosome evolution in birds and mammals
  99. Micro- and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome
  100. Parameters of the chicken genome (Gallus gallus )