All Stories

  1. Time resolved gene expression analysis during tamoxifen adaption of MCF-7 cells identifies long non-coding RNAs with prognostic impact

    Article • RNA Biology, February 2019, Taylor & Francis

    Professor Ivo Grosse, Norbert Nass

  2. Young Genes To The Front — A Strategy For Future Resistance Against Powdery Mildew?

    Article • April 2017, Cold Spring Harbor Laboratory Press

    Professor Ivo Grosse

  3. Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies

    Article • BMC Bioinformatics, March 2017, Springer Science + Business Media

    Professor Ivo Grosse

  4. Unrealistic phylogenetic trees may improve phylogenetic footprinting

    Article • Bioinformatics, January 2017, Oxford University Press (OUP)

    Professor Ivo Grosse

  5. Optimal Block-Based Trimming for Next Generation Sequencing

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, January 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Ivo Grosse

  6. InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites

    Article • Bioinformatics, December 2016, Oxford University Press (OUP)

    Professor Ivo Grosse

  7. Phylogenetic distribution of plant snoRNA families

    Article • BMC Genomics, November 2016, Springer Science + Business Media

    Professor Ivo Grosse

  8. Detecting and correcting the binding-affinity bias in ChIP-seq data using inter-species information

    Article • BMC Genomics, May 2016, Springer Science + Business Media

    Professor Ivo Grosse

  9. Capturing Evolutionary Signatures in Transcriptomes with myTAI

    Article • May 2016, Cold Spring Harbor Laboratory Press

    Professor Ivo Grosse

  10. Bioinformatics challenges of next generation sequencing

    Article • it - Information Technology, January 2016, De Gruyter

    Professor Ivo Grosse

  11. DiffLogo: a comparative visualization of sequence motifs

    Article • BMC Bioinformatics, November 2015, Springer Science + Business Media

    Professor Ivo Grosse

  12. Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data

    Article • BMC Bioinformatics, November 2015, Springer Science + Business Media

    Professor Ivo Grosse

  13. Joint Analysis of Dependent Features within Compound Spectra Can Improve Detection of Differential Features

    Article • Frontiers in Bioengineering and Biotechnology, September 2015, Frontiers

    Professor Ivo Grosse

  14. Computational Recognition of RNA Splice Sites by Exact Algorithms for the Quadratic Traveling Salesman Problem

    Article • Computation, June 2015, MDPI AG

    Professor Ivo Grosse, Prof. Dr. Paul Molitor

  15. PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R

    Article • Bioinformatics, March 2015, Oxford University Press (OUP)

    Professor Ivo Grosse

  16. Evidence for Active Maintenance of Phylotranscriptomic Hourglass Patterns in Animal and Plant Embryogenesis

    Article • Molecular Biology and Evolution, January 2015, Oxford University Press (OUP)

    Professor Ivo Grosse

  17. plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants

    Article • Frontiers in Plant Science, December 2014, Frontiers

    Professor Ivo Grosse

  18. Experiment design beyond gut feeling: statistical tests and power to detect differential metabolites in mass spectrometry data

    Article • Metabolomics, November 2014, Springer Science + Business Media

    Professor Ivo Grosse

  19. Area under Precision-Recall Curves for Weighted and Unweighted Data

    Article • PLoS ONE, March 2014, PLOS

    Professor Ivo Grosse

  20. On the Value of Intra-Motif Dependencies of Human Insulator Protein CTCF

    Article • PLoS ONE, January 2014, PLOS

    Professor Ivo Grosse

  21. Correction: Optimized Probe Masking for Comparative Transcriptomics of Closely Related Species

    Article • PLoS ONE, January 2014, PLOS

    Professor Ivo Grosse

  22. On Optimal Read Trimming in Next Generation Sequencing and Its Complexity

    Article • January 2014, Springer Science + Business Media

    Professor Ivo Grosse

  23. DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data

    Article • BMC Bioinformatics, January 2014, Springer Science + Business Media

    Professor Ivo Grosse

  24. Optimized Probe Masking for Comparative Transcriptomics of Closely Related Species

    Article • PLoS ONE, November 2013, PLOS

    Professor Ivo Grosse

  25. Inhomogeneous Parsimonious Markov Models

    Article • January 2013, Springer Science + Business Media

    Professor Ivo Grosse

  26. A transcriptomic hourglass in plant embryogenesis

    Article • Nature, September 2012, Nature

    Professor Ivo Grosse

  27. Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana

    Article • PLoS Computational Biology, January 2012, PLOS

    Professor Ivo Grosse

  28. De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference

    Article • PLoS Computational Biology, February 2011, PLOS

    Professor Ivo Grosse

  29. Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Professor Ivo Grosse

  30. Unifying generative and discriminative learning principles

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Professor Ivo Grosse

  31. Probabilistic Approaches to Transcription Factor Binding Site Prediction

    Article • January 2010, Springer Science + Business Media

    Professor Ivo Grosse

  32. miRGen 2.0: a database of microRNA genomic information and regulation

    Article • Nucleic Acids Research, November 2009, Oxford University Press (OUP)

    Professor Ivo Grosse, Dr Thanasis Vergoulis

  33. MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations

    Article • Genome Biology, January 2009, Springer Science + Business Media

    Professor Ivo Grosse

  34. Statistical Analysis of DNA Sequences

    Article • December 2007, Wiley

    Professor Ivo Grosse

  35. Phylogenetic footprints in fern spore- and seed-specific gene promoters

    Article • The Plant Journal, October 2007, Wiley

    Professor Ivo Grosse

  36. RECOGNITION OF CIS-REGULATORY ELEMENTS WITH VOMBAT

    Article • Journal of Bioinformatics and Computational Biology, April 2007, World Scientific Pub Co Pte Lt

    Professor Ivo Grosse

  37. Fractionally integrated process for transition economics

    Article • Physica A Statistical Mechanics and its Applications, April 2006, Elsevier

    Professor Ivo Grosse

  38. Data Structures for Genome Annotation, Alternative Splicing, and Validation

    Article • January 2006, Springer Science + Business Media

    Professor Ivo Grosse

  39. Fractionally integrated process with power-law correlations in variables and magnitudes

    Article • Physical Review E, August 2005, American Physical Society (APS)

    Professor Ivo Grosse

  40. Power-law correlated processes with asymmetric distributions

    Article • Physical Review E, February 2005, American Physical Society (APS)

    Professor Ivo Grosse

  41. Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression

    Article • Journal of Computational Biology, March 2004, Mary Ann Liebert Inc

    Professor Ivo Grosse, Dr Wentian Li

  42. Comments on ?linguistic features in eukaryotic genomes?

    Article • Complexity, January 2004, Wiley

    Professor Ivo Grosse

  43. Repeats and correlations in human DNA sequences

    Article • June 2003, American Physical Society (APS)

    Professor Ivo Grosse

  44. Gene selection criterion for discriminant microarray data analysis based on extreme value distributions

    Article • January 2003, ACM (Association for Computing Machinery)

    Professor Ivo Grosse, Dr Wentian Li

  45. Applications of recursive segmentation to the analysis of DNA sequences

    Article • Computers & Chemistry, July 2002, Elsevier

    Professor Ivo Grosse, Dr Wentian Li

  46. Analysis of symbolic sequences using the Jensen-Shannon divergence

    Article • March 2002, American Physical Society (APS)

    Professor Ivo Grosse

  47. Statistical analysis of the DNA sequence of human chromosome 22

    Article • September 2001, American Physical Society (APS)

    Professor Ivo Grosse

  48. Optimization of Coding Potentials Using Positional Dependence of Nucleotide Frequencies

    Article • Journal of Theoretical Biology, October 2000, Elsevier

    Professor Ivo Grosse

  49. Are Noncoding Sequences of Rickettsia prowazekii Remnants of ``Neutralized'' Genes?

    Article • Journal of Molecular Evolution, October 2000, Springer Science + Business Media

    Professor Ivo Grosse

  50. Finding Borders between Coding and Noncoding DNA Regions by an Entropic Segmentation Method

    Article • Physical Review Letters, August 2000, American Physical Society (APS)

    Professor Ivo Grosse

  51. Species independence of mutual information in coding and noncoding DNA

    Article • May 2000, American Physical Society (APS)

    Professor Ivo Grosse

  52. AVERAGE MUTUAL INFORMATION OF CODING AND NONCODING DNA

    Article • December 1999, World Scientific Pub Co Pte Lt

    Professor Ivo Grosse

  53. Correlations in DNA sequences: The role of protein coding segments

    Article • January 1997, American Physical Society (APS)

    Professor Ivo Grosse

  54. Measuring correlations in symbol sequences

    Article • Physica A Statistical Mechanics and its Applications, July 1995, Elsevier

    Professor Ivo Grosse