All Stories

  1. Chromatin-loop extrusion and chromatin unknotting

    Article • September 2018, Cold Spring Harbor Laboratory Press

    Dr Dusan Racko

  2. Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes

    Article • Nucleic Acids Research, November 2017, Oxford University Press (OUP)

    Dr Dusan Racko

  3. Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe

    Article • Nucleic Acids Research, August 2017, Oxford University Press (OUP)

    Dr Dusan Racko

  4. Molecular Dynamics Simulation of Supercoiled, Knotted, and Catenated DNA Molecules, Including Modeling of Action of DNA Gyrase

    Article • January 2017, Springer Science + Business Media

    Dr Dusan Racko

  5. How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation

    Article • Nucleic Acids Research, April 2016, Oxford University Press (OUP)

    Dr Dusan Racko, Eric Rawdon

  6. Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenation

    Article • Nucleic Acids Research, July 2015, Oxford University Press (OUP)

    Dr Dusan Racko

  7. Arm retraction and escape transition in semi-flexible star polymer under cylindrical confinement

    Article • Journal of Molecular Modeling, July 2015, Springer Science + Business Media

    Dr Dusan Racko

  8. Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling

    Article • Nucleic Acids Research, February 2015, Oxford University Press (OUP)

    Dr Dusan Racko

  9. In situelectron microscopy of Braille microsystems: photo-actuation of ethylene vinyl acetate/carbon nanotube composites

    Article • Materials Research Express, January 2015, Institute of Physics Publishing

    Dr Dusan Racko

  10. Nanocomposite photoactuators based on an ethylene vinyl acetate copolymer filled with carbon nanotubes

    Article • Sensors and Actuators B Chemical, September 2013, Elsevier

    Dr Dusan Racko

  11. Spectral characteristics of carbonyl substituted 2,2′-bithiophenes in polymer matrices and low polar solvents

    Article • Photochemical & Photobiological Sciences, July 2013, Springer Science + Business Media

    Dr Dusan Racko

  12. Segregation of semiflexible macromolecules in nanochannel

    Article • The Journal of Chemical Physics, May 2013, American Institute of Physics

    Dr Dusan Racko

  13. On the Relationship of the Relative Intensity I3 and a Cavity Number as Obtained from Computer Simulations

    Article • Materials Science Forum, January 2013, Trans Tech Publications

    Dr Dusan Racko

  14. The Free Volume Dynamics

    Article • Materials Science Forum, January 2013, Trans Tech Publications

    Dr Dusan Racko

  15. Glucose diffusivity and porosity in silica hydrogel based on organofunctional silanes

    Article • European Polymer Journal, July 2011, Elsevier

    Dr Dusan Racko

  16. The free volume of poly(vinyl methylether) as computed in a wide temperature range and at length scales up to the nanoregion

    Article • The Journal of Chemical Physics, January 2011, American Institute of Physics

    Dr Dusan Racko

  17. A Computational Model for Nano Scale Cavities in the Atomic Structure of Polymer Melt and Comparisons to PALS

    Article • Materials Science Forum, December 2010, Trans Tech Publications

    Dr Dusan Racko

  18. Mechanical properties of silica hydrogels prepared and aged at physiological conditions: testing in the compression mode

    Article • Journal of Sol-Gel Science and Technology, August 2009, Springer Science + Business Media

    Dr Dusan Racko

  19. Fluorescence study of the dynamics of a star-shaped poly(ɛ-caprolactone)s in THF: A comparison with a star-shaped poly(l-lactide)s

    Article • Polymer, May 2009, Elsevier

    Dr Dusan Racko

  20. The free-volume structure of a polymer melt, poly(vinyl methylether) from molecular dynamics simulations and cavity analysis

    Article • The Journal of Chemical Physics, January 2009, American Institute of Physics

    Dr Dusan Racko

  21. Spin probe reorientation and its connections with free volume and relaxation dynamics: Diglycidyl-ether of bis-phenol A

    Article • Journal of Non-Crystalline Solids, April 2008, Elsevier

    Dr Dusan Racko

  22. Preparation and characterization of a new derivative of rhodamine B with an alkoxysilane moiety

    Article • Dyes and Pigments, January 2008, Elsevier

    Dr Dusan Racko

  23. Free volume from molecular dynamics simulations and its relationships to the positron annihilation lifetime spectroscopy

    Article • Theoretical Chemistry Accounts, April 2007, Springer Science + Business Media

    Dr Dusan Racko, Gianni Cardini

  24. Free volume in poly(propylene glycol) and its relationships to spin probe reorientation

    Article • Journal of Non-Crystalline Solids, November 2006, Elsevier

    Dr Dusan Racko

  25. Positron annihilation lifetime response and relaxation dynamics in glycerol

    Article • Journal of Non-Crystalline Solids, September 2005, Elsevier

    Dr Dusan Racko

  26. Insights into positron annihilation lifetime spectroscopy by molecular dynamics simulations

    Article • The European Physical Journal D, February 2005, Springer Science + Business Media

    Dr Dusan Racko, Gianni Cardini