All Stories

  1. Rapid decomposition and visualisation of protein–ligand binding free energies by residue and by water
  2. Computational Assay of H7N9 Influenza Neuraminidase Reveals R292K Mutation Reduces Drug Binding Affinity
  3. Analysis and Assay of Oseltamivir-Resistant Mutants of Influenza Neuraminidase via Direct Observation of Drug Unbinding and Rebinding in Simulation
  4. Long Time Scale GPU Dynamics Reveal the Mechanism of Drug Resistance of the Dual Mutant I223R/H275Y Neuraminidase from H1N1-2009 Influenza Virus
  5. A water-swap reaction coordinate for the calculation of absolute protein–ligand binding free energies
  6. QM and QM / MM Approaches to Evaluating Binding Affinities
  7. A massively multicore parallelization of the Kohn‐Sham energy gradients
  8. Compatibility of Quantum Chemical Methods and Empirical (MM) Water Models in Quantum Mechanics/Molecular Mechanics Liquid Water Simulations
  9. Multicore Parallelization of Kohn−Sham Theory
  10. Lennard−Jones Parameters for B3LYP/CHARMM27 QM/MM Modeling of Nucleic Acid Bases
  11. Biomolecular simulation and modelling: status, progress and prospects
  12. Massively Multicore Parallelization of Kohn−Sham Theory
  13. An efficient method for the calculation of quantum mechanics/molecular mechanics free energies
  14. Applications and Advances of QM/MM Methods in Computational Enzymology
  15. Grid computing and biomolecular simulation
  16. The Development of Replica-Exchange-Based Free-Energy Methods
  17. Fluoride-Selective Binding in a New Deep Cavity Calix[4]pyrrole:  Experiment and Theory
  18. Multiscale modelling of biological systems
  19. Replica-Exchange-Based Free-Energy Methods