All Stories

  1. Robustly simulating biochemical reaction kinetics using multi-level Monte Carlo approaches

    Article • Journal of Computational Physics, July 2018, Elsevier

    Dr Christian Adam Yates

  2. Pair correlation functions for identifying spatial correlation in discrete domains

    Article • June 2018, American Physical Society (APS)

    Dr Christian Adam Yates

  3. Modeling persistence of motion in a crowded environment: The diffusive limit of excluding velocity-jump processes

    Article • March 2018, American Physical Society (APS)

    Dr Christian Adam Yates

  4. Spatially extended hybrid methods: a review

    Article • Journal of The Royal Society Interface, February 2018, Royal Society Publishing

    Dr Christian Adam Yates

  5. A Multi-stage Representation of Cell Proliferation as a Markov Process

    Article • Bulletin of Mathematical Biology, October 2017, Springer Science + Business Media

    Dr Christian Adam Yates

  6. A Multi-Stage Representation Of Cell Proliferation As A Markov Process

    Article • May 2017, Cold Spring Harbor Laboratory Press

    Dr Christian Adam Yates

  7. Variable species densities are induced by volume exclusion interactions upon domain growth

    Article • March 2017, American Physical Society (APS)

    Dr Christian Adam Yates

  8. Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process

    Article • npj Systems Biology and Applications, March 2017, Springer Science + Business Media

    Dr Christian Adam Yates

  9. Efficient parameter sensitivity computation for spatially extended reaction networks

    Article • The Journal of Chemical Physics, January 2017, American Institute of Physics

    Dr Christian Adam Yates

  10. The effect of domain growth on spatial correlations

    Article • Physica A Statistical Mechanics and its Applications, January 2017, Elsevier

    Dr Christian Adam Yates

  11. Zebrafish adult pigment stem cells are multipotent and form pigment cells by a progressive fate restriction process

    Article • BioEssays, December 2016, Wiley

    Dr Christian Adam Yates

  12. A hybrid algorithm for coupling partial differential equation and compartment-based dynamics

    Article • Journal of The Royal Society Interface, September 2016, Royal Society Publishing

    Dr Christian Adam Yates

  13. Using approximate Bayesian computation to quantify cell-cell adhesion parameters in a cell migratory process

    Article • August 2016, Cold Spring Harbor Laboratory Press

    Dr Christian Adam Yates

  14. Extending the Multi-level Method for the Simulation of Stochastic Biological Systems

    Article • Bulletin of Mathematical Biology, August 2016, Springer Science + Business Media

    Dr Christian Adam Yates

  15. Hard-sphere interactions in velocity-jump models

    Article • July 2016, American Physical Society (APS)

    Dr Christian Adam Yates

  16. How domain growth is implemented determines the long-term behavior of a cell population through its effect on spatial correlations

    Article • July 2016, American Physical Society (APS)

    Dr Christian Adam Yates

  17. Coupling volume-excluding compartment-based models of diffusion at different scales: Voronoi and pseudo-compartment approaches

    Article • Journal of The Royal Society Interface, July 2016, Royal Society Publishing

    Dr Christian Adam Yates

  18. Variable species densities are induced by volume exclusion interactions upon domain growth.

    Article • June 2016, Cold Spring Harbor Laboratory Press

    Dr Christian Adam Yates

  19. How domain growth is implemented determines the long term behaviour of a cell population through its effect on spatial correlations.

    Article • February 2016, Cold Spring Harbor Laboratory Press

    Dr Christian Adam Yates

  20. The effect of domain growth on spatial correlations

    Article • February 2016, Cold Spring Harbor Laboratory Press

    Dr Christian Adam Yates

  21. Reconciling diverse mammalian pigmentation patterns with a fundamental mathematical model

    Article • Nature Communications, January 2016, Nature

    Dr Christian Adam Yates

  22. Onset of collective motion in locusts is captured by a minimal model

    Article • Physical Review E, November 2015, American Physical Society (APS)

    Dr Christian Adam Yates

  23. Reconciling transport models across scales: The role of volume exclusion

    Article • Physical Review E, October 2015, American Physical Society (APS)

    Dr Christian Adam Yates

  24. Publisher's Note: Incorporating pushing in exclusion-process models of cell migration [Phys. Rev. E91, 052711 (2015)]

    Article • Physical Review E, June 2015, American Physical Society (APS)

    Dr Christian Adam Yates

  25. Inference of cell–cell interactions from population density characteristics and cell trajectories on static and growing domains

    Article • Mathematical Biosciences, June 2015, Elsevier

    Dr Christian Adam Yates

  26. Incorporating pushing in exclusion-process models of cell migration

    Article • Physical Review E, May 2015, American Physical Society (APS)

    Dr Christian Adam Yates

  27. Ten Simple Rules for a Successful Cross-Disciplinary Collaboration

    Article • PLoS Computational Biology, April 2015, PLOS

    Dr Christian Adam Yates, Dr Bram Kuijper

  28. The pseudo-compartment method for coupling partial differential equation and compartment-based models of diffusion

    Article • Journal of The Royal Society Interface, April 2015, Royal Society Publishing

    Dr Christian Adam Yates

  29. Mathematical modelling of turning delays in swarm robotics

    Article • IMA Journal of Applied Mathematics, March 2015, Oxford University Press (OUP)

    Dr Christian Adam Yates

  30. An adaptive multi-level simulation algorithm for stochastic biological systems

    Article • The Journal of Chemical Physics, January 2015, American Institute of Physics

    Dr Christian Adam Yates

  31. Deriving appropriate boundary conditions, and accelerating position-jump simulations, of diffusion using non-local jumping

    Article • Physical Biology, December 2014, Institute of Physics Publishing

    Dr Christian Adam Yates

  32. Incorporating pushing in exclusion process models of cell migration

    Article • December 2014, Cold Spring Harbor Laboratory Press

    Dr Christian Adam Yates

  33. Inference of cell-cell interactions from population density characteristics and cell trajectories on static and growing domains

    Article • November 2014, Cold Spring Harbor Laboratory Press

    Dr Ruth Baker, Dr Christian Adam Yates

  34. Discrete and continuous models for tissue growth and shrinkage

    Article • Journal of Theoretical Biology, June 2014, Elsevier

    Dr Christian Adam Yates

  35. Ten Simple Rules for Effective Computational Research

    Article • PLoS Computational Biology, March 2014, PLOS

    Derek Groen, Dr Alexander G Fletcher, Dr Gary R Mirams, Dr Derek Groen, Dr Christian Adam Yates

  36. Importance of the Voronoi domain partition for position-jump reaction-diffusion processes on nonuniform rectilinear lattices

    Article • Physical Review E, November 2013, American Physical Society (APS)

    Dr Ruth Baker, Dr Christian Adam Yates

  37. Novel Methods for Analysing Bacterial Tracks Reveal Persistence in Rhodobacter sphaeroides

    Article • PLoS Computational Biology, October 2013, PLOS

    Dr Christian Adam Yates

  38. Isotropic model for cluster growth on a regular lattice

    Article • Physical Review E, August 2013, American Physical Society (APS)

    Dr Ruth Baker, Dr Christian Adam Yates

  39. Recycling random numbers in the stochastic simulation algorithm

    Article • The Journal of Chemical Physics, March 2013, American Institute of Physics

    Dr Christian Adam Yates

  40. Modelling Cell Migration and Adhesion During Development

    Article • Bulletin of Mathematical Biology, October 2012, Springer Science + Business Media

    Dr Ruth Baker, Dr Christian Adam Yates

  41. Going from microscopic to macroscopic on nonuniform growing domains

    Article • Physical Review E, August 2012, American Physical Society (APS)

    Professor Radek Erban, Dr Christian Adam Yates

  42. Simplified Multitarget Tracking Using the PHD Filter for Microscopic Video Data

    Article • IEEE Transactions on Circuits and Systems for Video Technology, May 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Christian Adam Yates

  43. Look before you leap: A confidence-based method for selecting species criticality while avoiding negative populations in τ-leaping

    Article • The Journal of Chemical Physics, February 2011, American Institute of Physics

    Dr Christian Adam Yates

  44. Ergodic directional switching in mobile insect groups

    Article • Physical Review E, July 2010, American Physical Society (APS)

    Professor Radek Erban, Dr Christian Adam Yates

  45. From Microscopic to Macroscopic Descriptions of Cell Migration on Growing Domains

    Article • Bulletin of Mathematical Biology, October 2009, Springer Science + Business Media

    Professor Radek Erban, Dr Ruth Baker, Dr Christian Adam Yates

  46. Inherent noise can facilitate coherence in collective swarm motion

    Article • Proceedings of the National Academy of Sciences, April 2009, Proceedings of the National Academy of Sciences

    Dr Christian Adam Yates