All Stories

  1. Public Baseline and shared response structures support the theory of antibody repertoire functional commonality

    Article • PLoS Computational Biology, March 2021, PLOS

    Charlotte Deane

  2. Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice

    Article • PLoS Computational Biology, February 2020, PLOS

    Charlotte Deane

  3. RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold

    Article • PLoS ONE, October 2019, PLOS

    Charlotte Deane

  4. Looking for therapeutic antibodies in next-generation sequencing repositories

    Article • mAbs, July 2019, Taylor & Francis

    Charlotte Deane

  5. Antibody side chain conformations are position-dependent

    Article • Proteins Structure Function and Bioinformatics, January 2018, Wiley

    Charlotte Deane

  6. Co-evolution techniques are reshaping the way we do structural bioinformatics

    Article • F1000Research, July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  7. Faculty of 1000 evaluation for bbcontacts: prediction of β-strand pairing from direct coupling patterns.

    Article • July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  8. Faculty of 1000 evaluation for OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method.

    Article • July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  9. Faculty of 1000 evaluation for Dimeric interactions and complex formation using direct coevolutionary couplings.

    Article • July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  10. Faculty of 1000 evaluation for Inferring interaction partners from protein sequences.

    Article • July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  11. Faculty of 1000 evaluation for Structured States of Disordered Proteins from Genomic Sequences.

    Article • July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  12. Faculty of 1000 evaluation for From residue coevolution to protein conformational ensembles and functional dynamics.

    Article • July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  13. Faculty of 1000 evaluation for Large-scale determination of previously unsolved protein structures using evolutionary information.

    Article • July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  14. Faculty of 1000 evaluation for Protein structure determination using metagenome sequence data.

    Article • July 2017, Faculty of 1000, Ltd.

    Charlotte Deane

  15. The H3 loop of antibodies shows unique structural characteristics

    Article • Proteins Structure Function and Bioinformatics, April 2017, Wiley

    Cristian Regep, Charlotte Deane

  16. Faculty of 1000 evaluation for Comment on Three X-ray Crystal Structure Papers.

    Article • May 2016, Faculty of 1000, Ltd.

    Charlotte Deane

  17. ANARCI: antigen receptor numbering and receptor classification

    Article • Bioinformatics, September 2015, Oxford University Press (OUP)

    Charlotte Deane

  18. Structural Bridges through Fold Space

    Article • PLoS Computational Biology, September 2015, PLOS

    Charlotte Deane

  19. Alignment-free protein interaction network comparison

    Article • Bioinformatics, August 2014, Oxford University Press (OUP)

    Charlotte Deane

  20. Faculty of 1000 evaluation for How precise are reported protein coordinate data?

    Article • May 2014, Faculty of 1000, Ltd.

    Charlotte Deane

  21. Helix kinks are equally prevalent in soluble and membrane proteins

    Article • Proteins Structure Function and Bioinformatics, April 2014, Wiley

    Charlotte Deane

  22. Faculty of 1000 evaluation for WeFold: A Coopetition for Protein Structure Prediction.

    Article • April 2014, Faculty of 1000, Ltd.

    Charlotte Deane

  23. Protein Modeling and Structural Prediction

    Article • January 2014, Springer Science + Business Media

    Charlotte Deane

  24. Faculty of 1000 evaluation for Conservation of Protein Structure over Four Billion Years.

    Article • August 2013, Faculty of 1000, Ltd.

    Charlotte Deane

  25. Faculty of 1000 evaluation for A mathematical framework for protein structure comparison.

    Article • May 2013, Faculty of 1000, Ltd.

    Charlotte Deane

  26. Faculty of 1000 evaluation for Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding.

    Article • April 2013, Faculty of 1000, Ltd.

    Charlotte Deane

  27. Local Network Patterns in Protein-Protein Interfaces

    Article • PLoS ONE, March 2013, PLOS

    Charlotte Deane

  28. Faculty of 1000 evaluation for Principles for designing ideal protein structures.

    Article • February 2013, Faculty of 1000, Ltd.

    Charlotte Deane

  29. How long is a piece of loop?

    Article • PeerJ, February 2013, PeerJ

    Charlotte Deane

  30. Faculty of 1000 evaluation for Three-dimensional structures of membrane proteins from genomic sequencing.

    Article • January 2013, Faculty of 1000, Ltd.

    Charlotte Deane

  31. MP-T: improving membrane protein alignment for structure prediction

    Article • Bioinformatics, October 2012, Oxford University Press (OUP)

    Charlotte Deane

  32. Faculty of 1000 evaluation for Measuring the evolutionary rewiring of biological networks.

    Article • June 2012, Faculty of 1000, Ltd.

    Charlotte Deane

  33. Protein Interaction Networks and Their Statistical Analysis

    Article • September 2011, Wiley

    Charlotte Deane

  34. The imprint of codons on protein structure

    Article • Biotechnology Journal, May 2011, Wiley

    Dr Rhodri JK Saunders, Charlotte Deane

  35. Signatures of co-translational folding

    Article • Biotechnology Journal, April 2011, Wiley

    Dr Rhodri JK Saunders, Charlotte Deane

  36. Predicting antibody complementarity determining region structures without classification

    Article • Molecular BioSystems, January 2011, Royal Society of Chemistry

    Charlotte Deane

  37. MEDELLER: homology-based coordinate generation for membrane proteins

    Article • Bioinformatics, October 2010, Oxford University Press (OUP)

    Charlotte Deane

  38. Synonymous codon usage influences the local protein structure observed

    Article • Nucleic Acids Research, June 2010, Oxford University Press (OUP)

    Charlotte Deane

  39. Exploring the potential of template-based modelling

    Article • Bioinformatics, June 2010, Oxford University Press (OUP)

    Charlotte Deane

  40. Protein structure prediction begins well but ends badly

    Article • Proteins Structure Function and Bioinformatics, October 2009, Wiley

    Dr Rhodri JK Saunders, Charlotte Deane

  41. Functionally guided alignment of protein interaction networks for module detection

    Article • Bioinformatics, October 2009, Oxford University Press (OUP)

    Charlotte Deane

  42. iMembrane: homology-based membrane-insertion of proteins

    Article • Bioinformatics, February 2009, Oxford University Press (OUP)

    Charlotte Deane

  43. An assessment of the uses of homologous interactions

    Article • Bioinformatics, November 2007, Oxford University Press (OUP)

    Charlotte Deane

  44. Fold usage on genomes and protein fold evolution

    Article • Proteins Structure Function and Bioinformatics, July 2005, Wiley

    Dr. Sanne Abeln, Charlotte Deane

  45. PROTEIN COMPARATIVE MODELLING AND DRUG DISCOVERY

    Article • January 2003, Elsevier

    Charlotte Deane

  46. Improved protein loop prediction from sequence alone

    Article • Protein Engineering Design and Selection, July 2001, Oxford University Press (OUP)

    Charlotte Deane