All Stories

  1. Inhibitory effects of bioactive molecules against nonstructural protein (NSs) of Rift Valley Fever Virus (RVFv): A molecular modeling study

    Article • Heliyon, March 2025, Elsevier

    Dr. Anuj Kumar

  2. Multiple Protein Profiler 1.0 (MPP): A Webserver for Predicting and Visualizing Physiochemical Properties of Proteins at the Proteome Level

    Article • The Protein Journal, July 2024, Springer Science + Business Media

    Dr. Anuj Kumar

  3. Sesame Genomic Web Resource (SesameGWR): a well-annotated data resource for transcriptomic signatures of abiotic and biotic stress responses in sesame (Sesamum indicum L.)

    Article • Briefings in Functional Genomics, June 2024, Oxford University Press (OUP)

    Dr. Anuj Kumar

  4. Formulation of next-generation polyvalent vaccine candidates against three important poxviruses by targeting DNA-dependent RNA polymerase using an integrated immunoinformatics and molecular modeling approach

    Article • Journal of Infection and Public Health, June 2024, Elsevier

    Dr. Anuj Kumar

  5. Identification of Marker Genes in Infectious Diseases from ScRNA-seq Data Using Interpretable Machine Learning

    Article • International Journal of Molecular Sciences, May 2024, MDPI AG

    Dr. Anuj Kumar

  6. Complete Genome Sequencing, Annotation, and Mutational Profiling of the Novel Clade I Human Mpox Virus, Kamituga Strain

    Article • The Journal of Infection in Developing Countries, April 2024, Journal of Infection in Developing Countries

    Dr. Anuj Kumar

  7. PoxiPred: An Artificial-Intelligence-Based Method for the Prediction of Potential Antigens and Epitopes to Accelerate Vaccine Development Efforts against Poxviruses

    Article • Biology, February 2024, MDPI AG

    Dr. Anuj Kumar

  8. CDBProm: the Comprehensive Directory of Bacterial Promoters

    Article • NAR Genomics and Bioinformatics, January 2024, Oxford University Press (OUP)

    Dr. Anuj Kumar

  9. Inhibition potential of natural flavonoids against selected omicron (B.1.19) mutations in the spike receptor binding domain of SARS-CoV-2: a molecular modeling approach

    Article • Journal of Biomolecular Structure and Dynamics, December 2023, Taylor & Francis

    Dr. Anuj Kumar

  10. PoxiPred: An artificial intelligence-based method for the prediction of potential antigens and epitopes to accelerate vaccine development efforts against poxviruses

    Article • August 2023, Cold Spring Harbor Laboratory Press

    Dr. Anuj Kumar

  11. Mobile Signaling Peptides: Secret Molecular Messengers with a Mighty Role in Plant Life

    Article • Journal of Plant Growth Regulation, July 2023, Springer Science + Business Media

    Dr. Anuj Kumar

  12. Repurposing of drugs against methyltransferase as potential Zika virus therapies

    Article • Scientific Reports, May 2023, Springer Science + Business Media

    Dr. Anuj Kumar

  13. Cover Image, Volume 124, Number 5, May 2023

    Article • Journal of Cellular Biochemistry, May 2023, Wiley

    Dr. Anuj Kumar

  14. Evaluation of eight Bayesian genomic prediction models for three micronutrient traits in bread wheat ( Triticum aestivum L.)

    Article • The Plant Genome, April 2023, Wiley

    Dr. Anuj Kumar

  15. LDRGDb - Legumes disease resistance genes database

    Article • Frontiers in Plant Science, April 2023, Frontiers

    Dr. Anuj Kumar

  16. Data from Nifuroxazide Activates the Parthanatos to Overcome TMPRSS2:ERG Fusion-Positive Prostate Cancer

    Article • April 2023, American Association for Cancer Research (AACR)

    Dr. Anuj Kumar

  17. Data from Nifuroxazide Activates the Parthanatos to Overcome TMPRSS2:ERG Fusion-Positive Prostate Cancer

    Article • April 2023, American Association for Cancer Research (AACR)

    Dr. Anuj Kumar

  18. Supplementary Data 1 from Nifuroxazide Activates the Parthanatos to Overcome TMPRSS2:ERG Fusion-Positive Prostate Cancer

    Article • April 2023, American Association for Cancer Research (AACR)

    Dr. Anuj Kumar

  19. Supplementary Data 1 from Nifuroxazide Activates the Parthanatos to Overcome TMPRSS2:ERG Fusion-Positive Prostate Cancer

    Article • April 2023, American Association for Cancer Research (AACR)

    Dr. Anuj Kumar

  20. Supplementary Materials from Nifuroxazide Activates the Parthanatos to Overcome TMPRSS2:ERG Fusion-Positive Prostate Cancer

    Article • April 2023, American Association for Cancer Research (AACR)

    Dr. Anuj Kumar

  21. Supplementary Materials from Nifuroxazide Activates the Parthanatos to Overcome TMPRSS2:ERG Fusion-Positive Prostate Cancer

    Article • April 2023, American Association for Cancer Research (AACR)

    Dr. Anuj Kumar

  22. Regulatory Networks of lncRNAs, miRNAs, and mRNAs in Response to Heat Stress in Wheat (Triticum Aestivum L.): An Integrated Analysis

    Article • International Journal of Genomics, March 2023, Hindawi Publishing Corporation

    Dr. Anuj Kumar

  23. Drug repurposing for Mpox: Discovery of small molecules as potential inhibitors against DNA‐dependent RNA polymerase using molecular modeling approach

    Article • Journal of Cellular Biochemistry, March 2023, Wiley

    Dr. Anuj Kumar

  24. Disruption of DYRK1A-induced hyperphosphorylation of amyloid-beta and tau protein in Alzheimer’s disease: An integrative molecular modeling approach

    Article • Frontiers in Molecular Biosciences, January 2023, Frontiers

    Dr. Anuj Kumar

  25. Nifuroxazide Activates the Parthanatos to Overcome TMPRSS2:ERG Fusion-Positive Prostate Cancer

    Article • Molecular Cancer Therapeutics, January 2023, American Association for Cancer Research (AACR)

    Dr. Anuj Kumar

  26. Computation Tools for Prediction and Analysis of Genomic Islands

    Article • January 2023, Springer Science + Business Media

    Dr. Anuj Kumar

  27. QTL analysis for nitrogen use efficiency in wheat (Triticum aestivum L.)

    Article • Euphytica, December 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  28. Integrated model for genomic prediction under additive and non-additive genetic architecture

    Article • Frontiers in Plant Science, November 2022, Frontiers

    Dr. Anuj Kumar

  29. Genome-wide characterization and identification of cyclophilin genes associated with leaf rust resistance in bread wheat (Triticum aestivum L.)

    Article • Frontiers in Genetics, September 2022, Frontiers

    Dr. Anuj Kumar

  30. ASRpro: A machine‐learning computational model for identifying proteins associated with multiple abiotic stress in plants

    Article • The Plant Genome, September 2022, Wiley

    Dr. Anuj Kumar, Tanmaya Kumar Sahu

  31. Structural and functional insights into the candidate genes associated with different developmental stages of flag leaf in bread wheat (Triticum aestivum L.)

    Article • Frontiers in Genetics, August 2022, Frontiers

    Dr. Anuj Kumar

  32. Deciphering the role of Trichoderma sp. bioactives in combating the wilt causing cell wall degrading enzyme polygalacturonase produced by Fusarium oxysporum: An in-silico approach

    Article • Microbial Pathogenesis, June 2022, Elsevier

    Dr. Anuj Kumar

  33. Potential of Natural Alkaloids From Jadwar (Delphinium denudatum) as Inhibitors Against Main Protease of COVID-19: A Molecular Modeling Approach

    Article • Frontiers in Molecular Biosciences, May 2022, Frontiers

    Dr. Anuj Kumar

  34. Alpha, Beta, Delta, Omicron, and SARS-CoV-2 Breakthrough Cases: Defining Immunological Mechanisms for Vaccine Waning and Vaccine-Variant Mismatch

    Article • Frontiers in Virology, May 2022, Frontiers

    Dr. Anuj Kumar

  35. Performance of Bayesian and BLUP alphabets for genomic prediction: analysis, comparison and results

    Article • Heredity, May 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  36. Phosphorus homeostasis: acquisition, sensing, and long-distance signaling in plants

    Article • Molecular Biology Reports, March 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  37. CerealESTDb: A Comprehensive Resource for Abiotic Stress-Responsive Annotated ESTs With Predicted Genes, Gene Ontology, and Metabolic Pathways in Major Cereal Crops

    Article • Frontiers in Genetics, February 2022, Frontiers

    Dr. Anuj Kumar

  38. Genomic Selection: A Tool for Accelerating the Efficiency of Molecular Breeding for Development of Climate-Resilient Crops

    Article • Frontiers in Genetics, February 2022, Frontiers

    Dr. Anuj Kumar

  39. Identification of Potential Cytokinin Responsive Key Genes in Rice Treated With Trans-Zeatin Through Systems Biology Approach

    Article • Frontiers in Genetics, February 2022, Frontiers

    Dr. Anuj Kumar

  40. Development and characterization of nitrogen and phosphorus use efficiency responsive genic and miRNA derived SSR markers in wheat

    Article • Heredity, February 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  41. ASRmiRNA: Abiotic Stress-Responsive miRNA Prediction in Plants by Using Machine Learning Algorithms with Pseudo K-Tuple Nucleotide Compositional Features

    Article • International Journal of Molecular Sciences, January 2022, MDPI AG

    Dr. Anuj Kumar

  42. Genetic diversity for developing climate-resilient wheats to achieve food security goals

    Article • January 2022, Elsevier

    Dr. Anuj Kumar

  43. Genomics of Cereal Crops

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  44. Computational Methods for Receptor–Metabolite Interaction Studies in Crops

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  45. Tools and Techniques for Genomic Imprinting

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  46. Genomic Selection Using Bayesian Methods: Models, Software, and Application

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  47. Identification of ceRNAs in Cereal Crops: A Computational Approach

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  48. Protocol for In Silico Identification and Functional Annotation of Abiotic Stress–Responsive MicroRNAs in Crop Plants

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  49. Transcriptome Data Analysis Using a De Novo Assembly Approach

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  50. Protocol for Identification and Annotation of Differentially Expressed Genes Using Reference-Based Transcriptomic Approach

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  51. OMICS Tools and Techniques for Study of Defense Mechanism in Plants

    Article • January 2022, Springer Science + Business Media

    Dr. Anuj Kumar

  52. Nitrogen use efficiency (NUE): elucidated mechanisms, mapped genes and gene networks in maize (Zea mays L.)

    Article • Physiology and Molecular Biology of Plants, December 2021, Springer Science + Business Media

    Dr. Anuj Kumar, Yasin jeshima

  53. Inhibition Potencies of Phytochemicals Derived from Sesame Against SARS-CoV-2 Main Protease: A Molecular Docking and Simulation Study

    Article • Frontiers in Chemistry, October 2021, Frontiers

    Dr. Anuj Kumar

  54. Discovery of miRNAs and Development of Heat-Responsive miRNA-SSR Markers for Characterization of Wheat Germplasm for Terminal Heat Tolerance Breeding

    Article • Frontiers in Genetics, July 2021, Frontiers

    Dr. Anuj Kumar

  55. Abstract 712: Anticancer natural compounds as potential inhibitors of novel coronavirus (COVID19) main protease: An in-silico study

    Article • July 2021, American Association for Cancer Research (AACR)

    Dr. Anuj Kumar

  56. Molecular docking and dynamics studies of curcumin with COVID-19 proteins

    Article • Network Modeling Analysis in Health Informatics and Bioinformatics, June 2021, Springer Science + Business Media

    Dr. Anuj Kumar

  57. Functional Exploration of Chaperonin (HSP60/10) Family Genes and their Abiotic Stress-induced Expression Patterns in Sorghum bicolor

    Article • Current Genomics, June 2021, Bentham Science Publishers

    Dr. Anuj Kumar, NAGARAJU MARKA

  58. Impact of metal oxide nanoparticles on cotton (Gossypium hirsutum L.): a physiological perspective

    Article • Journal of Cotton Research, June 2021, Springer Science + Business Media

    Dr. Anuj Kumar

  59. Rifampicin and Letermovir as potential repurposed drug candidate for COVID-19 treatment: insights from an in-silico study

    Article • Pharmacological Reports, May 2021, Springer Science + Business Media

    Dr. Anuj Kumar

  60. Potential of Pueraria tuberosa (Willd.) DC. to rescue cognitive decline associated with BACE1 protein of Alzheimer's disease on Drosophila model: An integrated molecular modeling and in vivo approach

    Article • International Journal of Biological Macromolecules, May 2021, Elsevier

    Dr. Anuj Kumar, Dr Javad Sharifi Rad

  61. PredCRG: A computational method for recognition of plant circadian genes by employing support vector machine with Laplace kernel

    Article • Plant Methods, April 2021, Springer Science + Business Media

    Dr. Anuj Kumar

  62. Unraveling the potential role of bioactive molecules produced by Trichoderma spp. as inhibitors of tomatinase enzyme having an important role in wilting disease: an in-silico approach

    Article • Journal of Biomolecular Structure and Dynamics, March 2021, Taylor & Francis

    Dr. Anuj Kumar

  63. Development and use of miRNA-derived SSR markers for the study of genetic diversity, population structure, and characterization of genotypes for breeding heat tolerant wheat varieties

    Article • PLOS One, February 2021, PLOS

    Dr. Anuj Kumar

  64. Natural xanthone compounds as promising drug candidates against COVID-19 - An integrated molecular docking and dynamics simulation study

    Article • November 2020, Research Square

    Dr. Anuj Kumar

  65. DnaJs, the critical drivers of Hsp70s: genome-wide screening, characterization and expression of DnaJ family genes in Sorghum bicolor

    Article • Molecular Biology Reports, September 2020, Springer Science + Business Media

    Dr. Anuj Kumar

  66. Myricetin bioactive effects: moving from preclinical evidence to potential clinical applications

    Article • BMC Complementary Medicine and Therapies, August 2020, Springer Science + Business Media

    Dr. Anuj Kumar, Prabhakar Semwal, Dr Elena Azzini, Dr Javad Sharifi Rad

  67. Homology modeling and molecular dynamics based insights into Chalcone synthase and Chalcone isomerase in Phyllanthus emblica L.

    Article • 3 Biotech, August 2020, Springer Science + Business Media

    Dr. Anuj Kumar

  68. Contribution of Nanotechnology in the Fight Against COVID-19

    Article • Biointerface Research in Applied Chemistry, July 2020, AMG Transcend Association

    Dr. Anuj Kumar

  69. Identification of phytochemical inhibitors against main protease of COVID-19 using molecular modeling approaches

    Article • Journal of Biomolecular Structure and Dynamics, June 2020, Taylor & Francis

    Dr. Anuj Kumar

  70. Development and Use of miRNA-derived SSR Markers to Study Genetic Diversity, Population Structure and Characterization of Genotypes for Heat Tolerance Breeding in Bread Wheat (Triticum aestivumL.)

    Article • March 2020, Cold Spring Harbor Laboratory Press

    Dr. Anuj Kumar

  71. Introgression of a drought insensitive grain yield QTL for improvement of four Indian bread wheat cultivars using marker assisted breeding without background selection

    Article • Journal of Plant Biochemistry and Biotechnology, February 2020, Springer Science + Business Media

    Dr. Anuj Kumar

  72. Transcription factors and their roles in phosphorus stress tolerance in crop plants

    Article • January 2020, Elsevier

    Dr. Anuj Kumar

  73. Genome-wide identification and transcriptional profiling of small heat shock protein gene family under diverse abiotic stress conditions in Sorghum bicolor (L.)

    Article • International Journal of Biological Macromolecules, October 2019, Elsevier

    Dr. Anuj Kumar

  74. Genome-wide identification, characterization, and expression profiling of SPX gene family in wheat

    Article • International Journal of Biological Macromolecules, August 2019, Elsevier

    Dr. Anuj Kumar

  75. A study of CCD8 genes/proteins in seven monocots and eight dicots

    Article • PLOS One, March 2019, PLOS

    Dr. Anuj Kumar

  76. Further studies on sugar transporter (SWEET) genes in wheat (Triticum aestivum L.)

    Article • Molecular Biology Reports, March 2019, Springer Science + Business Media

    Dr. Anuj Kumar

  77. Genome-scale identification, classification, and tissue specific expression analysis of late embryogenesis abundant (LEA) genes under abiotic stress conditions in Sorghum bicolor L.

    Article • PLOS One, January 2019, PLOS

    Dr. Anuj Kumar

  78. A model to predict the function of hypothetical proteins through a nine-point classification scoring schema

    Article • BMC Bioinformatics, January 2019, Springer Science + Business Media

    Dr. Anuj Kumar

  79. Characterizing and Functional Assignment of Noncoding RNAs

    Article • January 2019, Elsevier

    Dr. Anuj Kumar

  80. Genome-wide identification and characterization of gene family for RWP-RK transcription factors in wheat (Triticum aestivum L.)

    Article • PLOS One, December 2018, PLOS

    Dr. Anuj Kumar

  81. HYPO: A Database of Human Hypothetical Proteins

    Article • Protein and Peptide Letters, October 2018, Bentham Science Publishers

    Dr. Anuj Kumar

  82. Functional and structural insights into candidate genes associated with nitrogen and phosphorus nutrition in wheat ( Triticum aestivum L.)

    Article • International Journal of Biological Macromolecules, October 2018, Elsevier

    Dr. Anuj Kumar

  83. Transcriptional regulation of osmotic stress tolerance in wheat (Triticum aestivum L.)

    Article • Plant Molecular Biology, August 2018, Springer Science + Business Media

    Dr. Anuj Kumar

  84. ­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants

    Article • F1000Research, May 2018, Faculty of 1000, Ltd.

    Dr Vijay Gahlaut, Prashanth Suravajhala, Dr. Anuj Kumar

  85. Identification and Functional Characterization an Ortholog of OsENOD93-1 Gene in Wheat Using in-silico Approach

    Article • International Journal of Current Microbiology and Applied Sciences, May 2018, Excellent Publishers

    Dr. Anuj Kumar

  86. Identification, expression analysis, and molecular modeling of Iron-deficiency-specific clone 3 (Ids3)-like gene in hexaploid wheat

    Article • 3 Biotech, April 2018, Springer Science + Business Media

    Dr. Anuj Kumar

  87. Genome-wide in silico analysis of dehydrins in Sorghum bicolor, Setaria italica and Zea mays and quantitative analysis of dehydrin gene expressions under abiotic stresses in Sorghum bicolor

    Article • Plant Gene, March 2018, Elsevier

    Dr. Anuj Kumar

  88. Uttarakhand Medicinal Plants Database (UMPDB): A Platform for Exploring Genomic, Chemical, and Traditional Knowledge

    Article • Data, January 2018, MDPI AG

    Dr. Anuj Kumar

  89. Identification, expression analysis and molecular modeling of Iron deficiency specific clone 3 (Ids3) like gene in hexaploid wheat

    Article • January 2018, Cold Spring Harbor Laboratory Press

    Dr. Anuj Kumar

  90. A Web-resource for Nutrient Use Efficiency related Genes, QTLs, and microRNA in important cereals and model plants

    Article • November 2017, Cold Spring Harbor Laboratory Press

    Dr. Anuj Kumar

  91. Ursolic acid and carvacrol may be potential inhibitors of dormancy protein small heat shock protein16.3 of Mycobacterium tuberculosis

    Article • Journal of Biomolecular Structure and Dynamics, October 2017, Taylor & Francis

    Dr. Anuj Kumar

  92. Genome-Wide Mining, Characterization and Development of miRNA-SSRs in Arabidopsis thaliana

    Article • October 2017, Cold Spring Harbor Laboratory Press

    Dr. Anuj Kumar

  93. HYPO: A database of hypothetical human proteins

    Article • October 2017, Cold Spring Harbor Laboratory Press

    Dr. Anuj Kumar

  94. Homology Modeling, Molecular Docking and Molecular Dynamics Based Functional Insights into Rice Urease Bound to Urea

    Article • Proceedings of the National Academy of Sciences India Section B Biological Sciences, July 2017, Springer Science + Business Media

    Dr. Anuj Kumar

  95. SPARC paucity alleviates superoxide-mediated oxidative stress, apoptosis, and autophagy in diabetogenic hepatocytes

    Article • Free Radical Biology and Medicine, July 2017, Elsevier

    Dr. Anuj Kumar

  96. Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.)

    Article • Theoretical and Applied Genetics, October 2016, Springer Science + Business Media

    Dr. Anuj Kumar

  97. Functional and structural insights into novel DREB1A transcription factors in common wheat (Triticum aestivum L.): A molecular modeling approach

    Article • Computational Biology and Chemistry, October 2016, Elsevier

    Dr. Anuj Kumar

  98. Nitrogen and Phosphorus Use Efficiencies in Wheat: Physiology, Phenotyping, Genetics, and Breeding

    Article • September 2016, Wiley

    Dr. Anuj Kumar

  99. Protocol for Molecular Dynamics Simulations of Proteins

    Article • BIO-PROTOCOL, January 2016, Bio-Protocol, LLC

    Dr. Anuj Kumar