All Stories

  1. Completed genome and emergence scenario of the multidrug-resistant nosocomial pathogen Staphylococcus epidermidis ST215

    Article • BMC Microbiology, June 2024, Springer Science + Business Media

    Dr Andreas Sjodin

  2. Nanometa live: a user-friendly application for real-time metagenomic data analysis and pathogen identification

    Article • Bioinformatics, February 2024, Oxford University Press (OUP)

    Dr Andreas Sjodin

  3. Bipolar Biogeographical Distribution of Parafrancisella Bacteria Carried by the Ciliate Euplotes

    Article • Microbial Ecology, July 2023, Springer Science + Business Media

    Dr Andreas Sjodin

  4. Targeting the gut-lung axis by synbiotic feeding to infants in a randomized controlled trial

    Article • BMC Biology, February 2023, Springer Science + Business Media

    Dr Andreas Sjodin

  5. Co-Occurrence of Francisella, Spotted Fever Group Rickettsia, and Midichloria in Avian-Associated Hyalomma rufipes

    Article • Microorganisms, July 2022, MDPI AG

    Dr Andreas Sjodin

  6. Alphacoronavirus in a Daubenton’s Myotis Bat (Myotis daubentonii) in Sweden

    Article • Viruses, March 2022, MDPI AG

    Dr Andreas Sjodin

  7. Complete Genome Sequence of Francisella sp. Strain LA11-2445 (FDC406), a Novel Francisella Species Isolated from a Human Skin Lesion

    Article • Microbiology Resource Announcements, January 2021, ASM Journals

    Dr Andreas Sjodin

  8. Reorganized Genomic Taxonomy of Francisellaceae Enables Design of Robust Environmental PCR Assays for Detection of Francisella tularensis

    Article • Microorganisms, January 2021, MDPI AG

    Dr Andreas Sjodin

  9. Community-led, integrated, reproducible multi-omics with anvi’o

    Article • Nature Microbiology, December 2020, Springer Science + Business Media

    Dr Andreas Sjodin

  10. Complete Genome Sequences of Allofrancisella inopinata SYSU YG23 and Allofrancisella frigidaquae SYSU 10HL1970, Isolated from Water from Cooling Systems in China

    Article • Microbiology Resource Announcements, November 2020, ASM Journals

    Dr Andreas Sjodin

  11. Complete Genome Sequence of Francisella tularensis subsp. holarctica Strain A271_1 (FDC408), Isolated from a Eurasian Beaver (Castor fiber)

    Article • Microbiology Resource Announcements, November 2020, ASM Journals

    Dr Andreas Sjodin

  12. A whole-genome sequenced control population in northern Sweden reveals subregional genetic differences

    Article • PLoS ONE, September 2020, PLOS

    Dr Andreas Sjodin, Erik JOhansson

  13. Complete Genome Sequence of Francisella halioticida Type Strain DSM 23729 (FSC1005)

    Article • Microbiology Resource Announcements, September 2020, ASM Journals

    Dr Andreas Sjodin

  14. Reclassification of Francisella noatunensis subsp. orientalis Ottem et al. 2009 as Francisella orientalis sp. nov., Francisella noatunensis subsp. chilensis subsp. nov. and emended description of Francisella noatunensis

    Article • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, March 2020, Society for General Microbiology

    Dr Andreas Sjodin, Dr J. Gustavo Ramirez-Paredes

  15. doepipeline: a systematic approach for optimizing multi-level and multi-step data processing workflows

    Article • December 2018, Cold Spring Harbor Laboratory Press

    Dr Andreas Sjodin

  16. Reassessing the Role of Type II Toxin-Antitoxin Systems in Formation of Escherichia coli Type II Persister Cells

    Article • mBio, June 2018, ASM Journals

    Dr Andreas Sjodin, Niilo Kaldalu, Dr Frédéric Goormaghtigh

  17. Predators and nutrient availability favor protozoa-resisting bacteria in aquatic systems

    Article • Scientific Reports, May 2018, Springer Science + Business Media

    Dr Andreas Sjodin

  18. Hematopoietic Age at Onset of Triple-Negative Breast Cancer Dictates Disease Aggressiveness and Progression

    Article • Cancer Research, April 2016, American Association for Cancer Research (AACR)

    Dr Andreas Sjodin

  19. The Plant Genome Integrative Explorer Resource: PlantGen IE .org

    Article • New Phytologist, July 2015, Wiley

    Dr Andreas Sjodin

  20. Scaffolding of a bacterial genome using MinION nanopore sequencing

    Article • Scientific Reports, July 2015, Nature

    Dr Andreas Sjodin

  21. Complete Genome Sequence of Francisella guangzhouensis Strain 08HL01032 T , Isolated from Air-Conditioning Systems in China

    Article • Genome Announcements, March 2015, ASM Journals

    Dr Andreas Sjodin

  22. Complete Genome Sequence of Francisella endociliophora Strain FSC1006, Isolated from a Laboratory Culture of the Marine Ciliate Euplotes raikovi

    Article • Genome Announcements, November 2014, ASM Journals

    Dr Andreas Sjodin

  23. Francisella tularensis subsp. tularensis Group A.I, United States

    Article • Emerging Infectious Diseases, May 2014, Centers for Disease Control and Prevention (CDC)

    Dr Anders F Johansson, Dr Andreas Sjodin

  24. CanSNPer: a hierarchical genotype classifier of clonal pathogens

    Article • Bioinformatics, February 2014, Oxford University Press (OUP)

    Dr Andreas Sjodin

  25. Eight New Genomes and Synthetic Controls Increase the Accessibility of Rapid Melt-MAMA SNP Typing of Coxiella burnetii

    Article • PLoS ONE, January 2014, PLOS

    Dr Andreas Sjodin

  26. The Need for High-Quality Whole-Genome Sequence Databases in Microbial Forensics

    Article • Biosecurity and Bioterrorism Biodefense Strategy Practice and Science, September 2013, Mary Ann Liebert Inc

    Dr Andreas Sjodin

  27. Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177

    Article • Standards in Genomic Sciences, August 2013, Springer Science + Business Media

    Dr Andreas Sjodin

  28. Trans-Golgi Network Localized ECHIDNA/Ypt Interacting Protein Complex Is Required for the Secretion of Cell Wall Polysaccharides in Arabidopsis

    Article • The Plant Cell, July 2013, American Society of Plant Biologists (ASPB)

    Dr Andreas Sjodin

  29. Indigenous Infection withFrancisella tularensis holarcticain The Netherlands

    Article • Case Reports in Infectious Diseases, January 2013, Hindawi Publishing Corporation

    Dr Andreas Sjodin

  30. An improved multiple-locus variable-number of tandem repeat analysis (MLVA) for the fish pathogen Francisella noatunensis using capillary electrophoresis

    Article • BMC Veterinary Research, January 2013, Springer Science + Business Media

    Dr Andreas Sjodin

  31. The phylogeographic pattern of Francisella tularensis in Sweden indicates a Scandinavian origin of Eurosiberian tularaemia

    Article • Environmental Microbiology, December 2012, Wiley

    Dr Anders F Johansson, Dr Andreas Sjodin

  32. Genome Sequence of Francisella tularensis subspecies holarctica Strain FSC200, Isolated from a Child with Tularemia

    Article • Journal of Bacteriology, December 2012, ASM Journals

    Dr Anders F Johansson, Dr Andreas Sjodin

  33. Real-time PCR assays targeting unique DNA sequences of fish-pathogenic Francisella noatunensis subspecies noatunensis and orientalis

    Article • Diseases of Aquatic Organisms, November 2012, Inter-Research Science Center

    Dr Andreas Sjodin

  34. The Distribution of Francisella-like Bacteria Associated with Coastal Waters in Norway

    Article • Microbial Ecology, February 2012, Springer Science + Business Media

    Dr Andreas Sjodin

  35. Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Dr Anders F Johansson, Dr Andreas Sjodin

  36. Increased knowledge of Francisella genus diversity highlights the benefits of optimised DNA-based assays

    Article • BMC Microbiology, January 2012, Springer Science + Business Media

    Dr Anders F Johansson, Dr Andreas Sjodin

  37. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis

    Article • Nucleic Acids Research, November 2011, Oxford University Press (OUP)

    Dr Andreas Sjodin

  38. Components Acting Downstream of Short Day Perception Regulate Differential Cessation of Cambial Activity and Associated Responses in Early and Late Clones of Hybrid Poplar

    Article • PLANT PHYSIOLOGY, September 2010, American Society of Plant Biologists (ASPB)

    Dr Andreas Sjodin

  39. Whole-Genome Sequencing Reveals Distinct Mutational Patterns in Closely Related Laboratory and Naturally Propagated Francisella tularensis Strains

    Article • PLoS ONE, July 2010, PLOS

    Dr Andreas Sjodin

  40. A unique program for cell death in xylem fibers ofPopulusstem

    Article • The Plant Journal, April 2009, Wiley

    Dr Andreas Sjodin

  41. Local and systemic transcriptome responses to herbivory and jasmonic acid in Populus

    Article • Tree Genetics & Genomes, March 2009, Springer Science + Business Media

    Dr Andreas Sjodin

  42. ThePopulusGenome Integrative Explorer (PopGenIE): a new resource for exploring thePopulusgenome

    Article • New Phytologist, March 2009, Wiley

    Dr Andreas Sjodin

  43. The Control of Autumn Senescence in European Aspen

    Article • PLANT PHYSIOLOGY, February 2009, American Society of Plant Biologists (ASPB)

    Dr Andreas Sjodin

  44. Global expression profiling in leaves of free-growing aspen

    Article • BMC Plant Biology, January 2008, Springer Science + Business Media

    Dr Andreas Sjodin

  45. A cross-species transcriptomics approach to identify genes involved in leaf development

    Article • BMC Genomics, January 2008, Springer Science + Business Media

    Dr Andreas Sjodin

  46. Growth-phase-dependent gene expression profiling of poplar (Populus alba × Populus tremula var. glandulosa) suspension cells

    Article • Physiologia Plantarum, December 2007, Wiley

    Dr Andreas Sjodin

  47. Orthogonal projections to latent structures as a strategy for microarray data normalization

    Article • BMC Bioinformatics, June 2007, Springer Science + Business Media

    Dr Andreas Sjodin

  48. Environmental and hormonal regulation of the activity-dormancy cycle in the cambial meristem involves stage-specific modulation of transcriptional and metabolic networks

    Article • The Plant Journal, April 2007, Wiley

    Dr Andreas Sjodin

  49. UPSC-BASE -Populustranscriptomics online

    Article • The Plant Journal, December 2006, Wiley

    Dr Andreas Sjodin

  50. The genetics and genomics of the drought response inPopulus

    Article • The Plant Journal, November 2006, Wiley

    Dr Andreas Sjodin

  51. MASQOT-GUI: spot quality assessment for the two-channel microarray platform

    Article • Bioinformatics, August 2006, Oxford University Press (OUP)

    Dr Andreas Sjodin

  52. Abundantly and Rarely Expressed Lhc Protein Genes Exhibit Distinct Regulation Patterns in Plants

    Article • PLANT PHYSIOLOGY, February 2006, American Society of Plant Biologists (ASPB)

    Dr Andreas Sjodin

  53. Article • BMC Plant Biology, January 2006, Springer Science + Business Media

    Dr Andreas Sjodin

  54. Molecular targets of elevated [CO 2 ] in leaves and stems of Populus deltoides : implications for future tree growth and carbon sequestration

    Article • Functional Plant Biology, January 2006, CSIRO Publishing

    Dr Andreas Sjodin

  55. The transcriptome of Populus in elevated CO2

    Article • New Phytologist, May 2005, Wiley

    Dr Andreas Sjodin

  56. Article • BMC Bioinformatics, January 2005, Springer Science + Business Media

    Dr Andreas Sjodin

  57. Article • Genome Biology, January 2004, Springer Science + Business Media

    Dr Andreas Sjodin