All Stories

  1. Population heterogeneity in Cryptococcus neoformans: Impact on pathogenesis

    Article • PLoS Pathogens, July 2024, PLOS

    Alexandre Alanio

  2. Emerging mould infections: Get prepared to meet unexpected fungi in your patient

    Article • Medical Mycology, August 2019, Oxford University Press (OUP)

    Alexandre Alanio

  3. Intranasal Inoculation of Cryptococcus neoformans in Mice Produces Nasal Infection with Rapid Brain Dissemination

    Article • mSphere, August 2019, ASM Journals

    Alexandre Alanio

  4. Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype

    Article • PLoS Pathogens, July 2019, PLOS

    Alexandre Alanio

  5. Intranasal inoculation of Cryptococcus neoformans in mice produces nasal infection with rapid brain dissemination

    Article • July 2019, Cold Spring Harbor Laboratory Press

    Alexandre Alanio

  6. The enigmatic role of fungal annexins: the case of Cryptococcus neoformans

    Article • Microbiology, May 2019, Society for General Microbiology

    Alexandre Alanio

  7. Recent advances in managing HIV-associated cryptococcal meningitis

    Article • F1000Research, May 2019, Faculty of 1000, Ltd.

    Alexandre Alanio, Olivier Lortholary , Elvis Temfack

  8. The enigmatic role of fungal annexins: the case of Cryptococcus neoformans

    Article • January 2019, Cold Spring Harbor Laboratory Press

    Alexandre Alanio

  9. Recent advances in the understanding and management of mucormycosis

    Article • F1000Research, September 2018, Faculty of 1000, Ltd.

    Alexandre Alanio, Olivier Lortholary

  10. Global guidelines and initiatives from the European Confederation of Medical Mycology to improve patient care and research worldwide: New leadership is about working together

    Article • Mycoses, August 2018, Wiley

    Professor Nikolai Klimko, Dr Sharon C-A Chen, Alexandre Alanio

  11. Diversity of Pneumocystis jirovecii Across Europe: A Multicentre Observational Study

    Article • EBioMedicine, June 2017, Elsevier

    Alexandre Alanio

  12. Pneumocystis jirovecii detection in asymptomatic patients: what does its natural history tell us?

    Article • F1000Research, May 2017, Faculty of 1000, Ltd.

    Prof Stephane BRETAGNE, Alexandre Alanio

  13. Investigating Clinical Issues by Genotyping of Medically Important Fungi: Why and How?

    Article • Clinical Microbiology Reviews, May 2017, ASM Journals

    Alexandre Alanio, Prof Stephane BRETAGNE

  14. Diagnosis of invasive aspergillosis

    Article • F1000Research, February 2017, Faculty of 1000, Ltd.

    Alexandre Alanio, Prof Stephane BRETAGNE

  15. Faculty of 1000 evaluation for Voriconazole-Susceptible and Voriconazole-Resistant Aspergillus fumigatus Coinfection.

    Article • January 2017, Faculty of 1000, Ltd.

    Alexandre Alanio

  16. Performance evaluation of multiplex PCR including Aspergillus—not so simple!: Table 1.

    Article • Medical Mycology, September 2016, Oxford University Press (OUP)

    Alexandre Alanio

  17. Copy Number Variation of Mitochondrial DNA Genes in Pneumocystis jirovecii According to the Fungal Load in BAL Specimens

    Article • Frontiers in Microbiology, September 2016, Frontiers

    Alexandre Alanio

  18. Detection of circulating Mucorales DNA in critically ill burn patients: preliminary report of a screening strategy for early diagnosis and treatment

    Article • Clinical Infectious Diseases, August 2016, Oxford University Press (OUP)

    Alexandre Alanio

  19. Seroprevalence of Toxoplasma gondii and direct genotyping using minisequencing in free-range pigs in Burkina Faso

    Article • International Journal of Food Microbiology, August 2016, Elsevier

    Alexandre Alanio

  20. Les infections fongiques nasosinusiennes ne sont pas uniquement liées aux mucorales et aux Aspergillus !

    Article • Annales de Pathologie, August 2016, Elsevier

    Alexandre Alanio

  21. Variation in copy number of the 28S rDNA of Aspergillus fumigatus measured by droplet digital PCR and analog quantitative real-time PCR

    Article • Journal of Microbiological Methods, August 2016, Elsevier

    Alexandre Alanio

  22. New therapeutic strategies for invasive aspergillosis in the era of azole resistance: how should the prevalence of azole resistance be defined?: Table 1.

    Article • Journal of Antimicrobial Chemotherapy, July 2016, Oxford University Press (OUP)

    Alexandre Alanio

  23. Diversity of Pneumocystis jirovecii during Infection Revealed by Ultra-Deep Pyrosequencing

    Article • Frontiers in Microbiology, May 2016, Frontiers

    Alexandre Alanio

  24. ECIL guidelines for preventing Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipients

    Article • Journal of Antimicrobial Chemotherapy, May 2016, Oxford University Press (OUP)

    Alexandre Alanio

  25. Pneumocystis jirovecii pneumonia: still a concern in patients with haematological malignancies and stem cell transplant recipients

    Article • Journal of Antimicrobial Chemotherapy, May 2016, Oxford University Press (OUP)

    Alexandre Alanio

  26. ECIL guidelines for the diagnosis of Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipients

    Article • Journal of Antimicrobial Chemotherapy, May 2016, Oxford University Press (OUP)

    Alexandre Alanio

  27. Treatment with adalimumab for severe immune reconstitution inflammatory syndrome in an HIV-infected patient presenting with cryptococcal meningitis

    Article • Médecine et Maladies Infectieuses, January 2016, Elsevier

    Alexandre Alanio

  28. Azole Resistance of Aspergillus fumigatus in Immunocompromised Patients with Invasive Aspergillosis

    Article • Emerging Infectious Diseases, January 2016, Centers for Disease Control and Prevention (CDC)

    Alexandre Alanio

  29. Des cryptocoques où on ne les attend pas : à propos de cinq cas extracérébraux et extrapulmonaires

    Article • Annales de Pathologie, December 2015, Elsevier

    Alexandre Alanio

  30. Mucormycosis: New Developments into a Persistently Devastating Infection

    Article • Seminars in Respiratory and Critical Care Medicine, September 2015, Thieme Publishing Group

    Alexandre Alanio

  31. Immunodépression des brûlés graves et infections fongiques invasives : un rôle des cellules myéloïdes suppressives

    Article • Anesthésie & Réanimation, September 2015, Elsevier

    Alexandre Alanio

  32. La détection de l’ADN mucoral circulant permet d’anticiper le diagnostic de mucormycose invasive chez les patients brûlés graves

    Article • Anesthésie & Réanimation, September 2015, Elsevier

    Alexandre Alanio

  33. Short tandem repeat genotyping for P. jirovecii is more sensitive to mixed genotype than MLST

    Article • Journal de Mycologie Médicale, September 2015, Elsevier

    Alexandre Alanio

  34. Adaptation de Cryptococcus neoformans à l’hôte, vers la mise en évidence de la dormance d’un point de vue biologique

    Article • Journal de Mycologie Médicale, September 2015, Elsevier

    Alexandre Alanio

  35. Épidémie de mucormycose dans un centre de traitement des brûlés : des biomarqueurs diagnostiques au séquençage complets des souches

    Article • Journal de Mycologie Médicale, September 2015, Elsevier

    Alexandre Alanio

  36. High diversity of non-sporulating moulds in respiratory specimens of immunocompromised patients: should all the species be reported when diagnosing invasive aspergillosis?

    Article • Mycoses, July 2015, Wiley

    Alexandre Alanio

  37. Performance d’une puce à ADN pan-fongique pour le diagnostic étiologique des infections fongiques, à partir de prélèvements profonds

    Article • Journal de Mycologie Médicale, June 2015, Elsevier

    Alexandre Alanio

  38. Correlation BetweenPneumocystis jiroveciiMitochondrial Genotypes and High and Low Fungal Loads Assessed by Single Nucleotide Primer Extension Assay and Quantitative Real-Time PCR

    Article • Journal of Eukaryotic Microbiology, May 2015, Wiley

    Alexandre Alanio

  39. Agents of Systemic and Subcutaneous Mucormycosis and Entomophthoromycosis

    Article • May 2015, ASM Journals

    Alexandre Alanio

  40. New Short Tandem Repeat-Based Molecular Typing Method for Pneumocystis jirovecii Reveals Intrahospital Transmission between Patients from Different Wards

    Article • PLoS ONE, May 2015, PLOS

    Alexandre Alanio

  41. Dual Invasive Infection with Phaeoacremonium parasiticum and Paraconiothyrium cyclothyrioides in a Renal Transplant Recipient: Case Report and Comprehensive Review of the Literature of Phaeoacremonium Phaeohyphomycosis

    Article • Journal of Clinical Microbiology, April 2015, ASM Journals

    Alexandre Alanio, Dr Sébastien Gallien

  42. Importance of Operational Factors in the Reproducibility of Aspergillus Galactomannan Enzyme Immune Assay

    Article • PLoS ONE, April 2015, PLOS

    Alexandre Alanio

  43. Cryptococcus neoformans Host Adaptation: Toward Biological Evidence of Dormancy

    Article • mBio, March 2015, ASM Journals

    Alexandre Alanio

  44. Muscle diffusion of liposomal amphotericin B and posaconazole in critically ill burn patients receiving continuous hemodialysis

    Article • Intensive Care Medicine, March 2015, Springer Science + Business Media

    Alexandre Alanio

  45. Combined medico-surgical strategy for invasive sino-orbito-cerebral breakthrough fungal infection withHormographiella aspergillatain an acute leukaemia patient

    Article • Mycoses, March 2015, Wiley

    Alexandre Alanio

  46. Aspergilloses pulmonaires invasives survenant sous traitement par posaconazole (PZA)

    Article • Revue des Maladies Respiratoires, January 2015, Elsevier

    Alexandre Alanio

  47. Utility of adding Pneumocystis jirovecii DNA detection in nasopharyngeal aspirates in immunocompromised adult patients with febrile pneumonia

    Article • Medical Mycology, December 2014, Oxford University Press (OUP)

    Alexandre Alanio

  48. Mucormycosis

    Article • Current Opinion in Hematology, November 2014, Wolters Kluwer Health

    Alexandre Alanio

  49. Des cryptocoques où on ne les attend pas : à propos de cinq cas extra-cérébraux et extra-pulmonaires

    Article • Annales de Pathologie, October 2014, Elsevier

    Alexandre Alanio

  50. Données cliniques, histopathologiques et moléculaires d’une série de mucormycoses

    Article • Journal de Mycologie Médicale, September 2014, Elsevier

    Alexandre Alanio

  51. Nouvelle méthode de typage moléculaire de Pneumocystis jirovecii par analyse de marqueurs microsatellites

    Article • Journal de Mycologie Médicale, September 2014, Elsevier

    Alexandre Alanio

  52. Diagnosis of Pneumocystis jirovecii Pneumonia: Role of β-D-Glucan Detection and PCR

    Article • Current Fungal Infection Reports, August 2014, Springer Science + Business Media

    Alexandre Alanio

  53. Antifungal pre-emptive strategy for high-risk neutropenic patients: why the story is still ongoing

    Article • Clinical Microbiology and Infection, June 2014, Elsevier

    Alexandre Alanio

  54. Difficulties with molecular diagnostic tests for mould and yeast infections: where do we stand?

    Article • Clinical Microbiology and Infection, June 2014, Elsevier

    Alexandre Alanio

  55. Iterative breakthrough invasive aspergillosis due to TR(34)/L98H azole-resistantAspergillus fumigatusandEmericella sublatain a single hematopoietic stem cell transplant patient

    Article • Transplant Infectious Disease, May 2014, Wiley

    Alexandre Alanio

  56. Misidentification of Saprochaete clavata as Magnusiomyces capitatus in Clinical Isolates: Utility of Internal Transcribed Spacer Sequencing and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Importance of Reliable Data...

    Article • Journal of Clinical Microbiology, April 2014, ASM Journals

    Alexandre Alanio

  57. Épidémiologie de la résistance des champignons : impact de nos prescriptions d’antifongiques

    Article • Journal des Anti-infectieux, March 2014, Elsevier

    Alexandre Alanio

  58. Recherche

    Article • Journal de Mycologie Médicale, March 2014, Elsevier

    Alexandre Alanio

  59. A. fumigatus et azoles : inadequation des breackpoints eucast pour l’interpretation des Etests

    Article • Journal de Mycologie Médicale, March 2014, Elsevier

    Alexandre Alanio

  60. Le milieu au malt en primoculture améliore et accélère l’identification des moisissures

    Article • Journal de Mycologie Médicale, March 2014, Elsevier

    Alexandre Alanio

  61. Une PCR quantitative positive a Pneumocystis jirovecii dans une aspiration naso-pharyngée est évocatrice d’une pneumocystose pulmonaire chez des patients avec atteinte pulmonaire fébrile

    Article • Journal de Mycologie Médicale, March 2014, Elsevier

    Alexandre Alanio

  62. Faculty Opinions recommendation of Quorum sensing-mediated, cell density-dependent regulation of growth and virulence in Cryptococcus neoformans.

    Article • January 2014, F1000Research

    Alexandre Alanio

  63. Direct genotyping of Toxoplasma gondii from amniotic fluids based on B1 gene polymorphism using minisequencing analysis

    Article • BMC Infectious Diseases, November 2013, Springer Science + Business Media

    Alexandre Alanio

  64. Faculty Opinions recommendation of The transcriptional response of Cryptococcus neoformans to ingestion by Acanthamoeba castellanii and macrophages provides insights into the evolutionary adaptation to the mammalian host.

    Article • July 2013, F1000Research

    Alexandre Alanio

  65. Faculty Opinions recommendation of De novo assembly of the Pneumocystis jirovecii genome from a single bronchoalveolar lavage fluid specimen from a patient.

    Article • June 2013, F1000Research

    Alexandre Alanio

  66. La spectrométrie de masse de type MALDI-TOF en mycologie clinique : avantages réels, écueils potentiels

    Article • Journal des Anti-infectieux, June 2013, Elsevier

    Alexandre Alanio

  67. Faculty Opinions recommendation of Real-time in vivo imaging of fungal migration to the central nervous system.

    Article • October 2012, F1000Research

    Alexandre Alanio

  68. Faculty Opinions recommendation of Fungi and the rise of mammals.

    Article • September 2012, F1000Research

    Alexandre Alanio

  69. Azole Preexposure Affects the Aspergillus fumigatus Population in Patients

    Article • Antimicrobial Agents and Chemotherapy, June 2012, ASM Journals

    Alexandre Alanio

  70. Faculty Opinions recommendation of The primary target organ of Cryptococcus gattii is different from that of Cryptococcus neoformans in a murine model.

    Article • May 2012, F1000Research

    Alexandre Alanio

  71. In VitroCombination of Anidulafungin and Voriconazole against Intrinsically Azole-Susceptible and -Resistant Aspergillus spp.

    Article • Antimicrobial Agents and Chemotherapy, May 2012, ASM Journals

    Alexandre Alanio, Dr Eric Dannaoui

  72. Faculty Opinions recommendation of A unique chromosomal rearrangement in the Cryptococcus neoformans var. grubii type strain enhances key phenotypes associated with virulence.

    Article • May 2012, F1000Research

    Alexandre Alanio

  73. Faculty Opinions recommendation of Adaptation of Cryptococcus neoformans to mammalian hosts: integrated regulation of metabolism and virulence.

    Article • January 2012, F1000Research

    Alexandre Alanio

  74. Faculty Opinions recommendation of Identification and characterization of an Aspergillus fumigatus "supermater" pair.

    Article • December 2011, F1000Research

    Alexandre Alanio

  75. Real-time PCR assay-based strategy for differentiation between active Pneumocystis jirovecii pneumonia and colonization in immunocompromised patients

    Article • Clinical Microbiology and Infection, October 2011, Elsevier

    Alexandre Alanio

  76. Dynamics of Cryptococcus neoformans-Macrophage Interactions Reveal that Fungal Background Influences Outcome during Cryptococcal Meningoencephalitis in Humans

    Article • mBio, August 2011, ASM Journals

    Alexandre Alanio

  77. Azole Resistance in Aspergillus fumigatus—Current Epidemiology and Future Perspectives

    Article • Current Fungal Infection Reports, June 2011, Springer Science + Business Media

    Alexandre Alanio

  78. Matrix‐assisted laser desorption ionization time‐of‐flight mass spectrometry for fast and accurate identification of clinically relevant Aspergillus species

    Article • Clinical Microbiology and Infection, May 2011, Elsevier

    Alexandre Alanio

  79. Low prevalence of resistance to azoles in Aspergillus fumigatus in a French cohort of patients treated for haematological malignancies--authors' response

    Article • Journal of Antimicrobial Chemotherapy, January 2011, Oxford University Press (OUP)

    Alexandre Alanio

  80. Low prevalence of resistance to azoles in Aspergillus fumigatus in a French cohort of patients treated for haematological malignancies

    Article • Journal of Antimicrobial Chemotherapy, December 2010, Oxford University Press (OUP)

    Alexandre Alanio

  81. Microsporum praecox: Molecular Identification of a New Case and Review of the Literature

    Article • Mycopathologia, July 2010, Springer Science + Business Media

    Alexandre Alanio

  82. Résistance microbiologique des Aspergillus aux antifongiques : de l’identification au séquençage des mutations

    Article • Antibiotiques, June 2010, Elsevier

    Alexandre Alanio

  83. Real-Time Identification of Bacteria and Candida Species in Positive Blood Culture Broths by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

    Article • Journal of Clinical Microbiology, March 2010, ASM Journals

    Alexandre Alanio

  84. Aspergilloses et Aspergillus : résistance clinique et microbiologique aux antifongiques

    Article • EMC - Biologie Médicale, January 2010, Elsevier

    Alexandre Alanio

  85. MALDI‐TOF MS‐based drug susceptibility testing of pathogens: The example of Candida albicans and fluconazole

    Article • PROTEOMICS, October 2009, Wiley

    Dominique Sanglard, Alexandre Alanio

  86. SUPERFICIAL BLADDER UROTHELILAL CELL CARCINOMA PROGNOSTIC FACTORS : PROSPECTIVE EVALUATION OF COMBINED FGFR3/P53 GENOTYPES

    Article • The Journal of Urology, April 2009, Wolters Kluwer Health

    Alexandre Alanio

  87. Invasive Pulmonary Infection Due toTrichoderma longibrachiatumMimicking Invasive Aspergillosis in a Neutropenic Patient Successfully Treated with Voriconazole Combined with Caspofungin

    Article • Clinical Infectious Diseases, May 2008, Oxford University Press (OUP)

    Alexandre Alanio

  88. 498 SUPERFICIAL BLADDER UROTHELIAL CELL CARCINOMA PROGNOSTIC FACTORS: PROSPECTIVE EVALUATION OF COMBINED FGFR3/P53 GENOTYPES

    Article • European Urology Supplements, March 2007, Elsevier

    Alexandre Alanio

  89. Faculty of 1000 evaluation for Are Human Intestinal Eukaryotes Beneficial or Commensals?

    Article • Faculty of 1000, Ltd.

    Alexandre Alanio

  90. Faculty of 1000 evaluation for Intracellular Action of a Secreted Peptide Required for Fungal Virulence.

    Article • Faculty of 1000, Ltd.

    Alexandre Alanio

  91. Faculty of 1000 evaluation for Protein Composition of Infectious Spores Reveals Novel Sexual Development and Germination Factors in Cryptococcus.

    Article • Faculty of 1000, Ltd.

    Alexandre Alanio