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  1. Tracing Scots Pine Expansion in Europe Using Patterns of Rare Alleles

    Article • Ecology and Evolution, November 2025, Wiley

    Tanja Pyhäjärvi

  2. Genetic differentiation and associated climatic variables between Camellia chekiangoleosa and its wild relatives revealed by SNP markers

    Article • Industrial Crops and Products, October 2025, Elsevier

    Tanja Pyhäjärvi

  3. The heritability accuracy in forest tree breeding programs relying on random mating

    Article • Scandinavian Journal of Forest Research, August 2025, Taylor & Francis

    Tanja Pyhäjärvi

  4. Ecological genomics beyond genome reports

    Article • G3 Genes Genomes Genetics, March 2025, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  5. Genetic variation of resistance in Scots pine as possible solution against Diplodia sapinea

    Article • Silva Fennica, January 2025, Finnish Society of Forest Science

    Tanja Pyhäjärvi

  6. Optimising Exome Captures in Species With Large Genomes Using Species‐Specific Repetitive DNA Blocker

    Article • Molecular Ecology Resources, December 2024, Wiley

    Tanja Pyhäjärvi

  7. Resilience of genetic diversity in forest trees over the Quaternary

    Article • Nature Communications, October 2024, Springer Science + Business Media

    Tanja Pyhäjärvi

  8. The genetic architecture of repeated local adaptation to climate in distantly related plants

    Article • Nature Ecology & Evolution, August 2024, Springer Science + Business Media

    Tanja Pyhäjärvi

  9. Does the seed fall far from the tree? Weak fine-scale genetic structure in a continuous Scots pine population

    Article • Peer Community Journal, April 2024, Peer Community In

    Tanja Pyhäjärvi

  10. Early-acting inbreeding depression can evolve as an inbreeding avoidance mechanism

    Article • Proceedings of the Royal Society B Biological Sciences, March 2024, Royal Society Publishing

    Tanja Pyhäjärvi

  11. Complex Polyploids: Origins, Genomic Composition, and Role of Introgressed Alleles

    Article • Systematic Biology, March 2024, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  12. BELMM: Bayesian model selection and random walk smoothing in time-series clustering

    Article • Bioinformatics, November 2023, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  13. Between but Not Within-Species Variation in the Distribution of Fitness Effects

    Article • Molecular Biology and Evolution, October 2023, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  14. Strong Purifying Selection in Haploid Tissue–Specific Genes of Scots Pine Supports the Masking Theory

    Article • Molecular Biology and Evolution, August 2023, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  15. Reproductive Compensation and Selection among Viable Embryos Drive the Evolution of Polyembryony

    Article • The American Naturalist, May 2023, University of Chicago Press

    Tanja Pyhäjärvi

  16. Genomics and adaptation in forest ecosystems

    Article • Tree Genetics & Genomes, February 2022, Springer Science + Business Media

    Tanja Pyhäjärvi

  17. Taming the massive genome of Scots pine with PiSy50k, a new genotyping array for conifer research

    Article • The Plant Journal, January 2022, Wiley

    Tanja Pyhäjärvi

  18. Adaptive responses to temperature and precipitation variation at the early‐life stages of Pinus sylvestris

    Article • New Phytologist, September 2021, Wiley

    Tanja Pyhäjärvi

  19. Atlas of tissue-specific and tissue-preferential gene expression in ecologically and economically significant conifer Pinus sylvestris

    Article • PeerJ, August 2021, PeerJ

    Tanja Pyhäjärvi

  20. Model guided trait-specific co-expression network estimation as a new perspective for identifying molecular interactions and pathways

    Article • PLoS Computational Biology, May 2021, PLOS

    Tanja Pyhäjärvi

  21. The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

    Article • GigaScience, March 2021, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  22. New model species for arctic‐alpine plant molecular ecology

    Article • Molecular Ecology Resources, February 2021, Wiley

    Tanja Pyhäjärvi

  23. The GenTree Leaf Collection: Inter‐ and intraspecific leaf variation in seven forest tree species in Europe

    Article • Global Ecology and Biogeography, January 2021, Wiley

    Tanja Pyhäjärvi

  24. Selection patterns on early‐life phenotypic traits in Pinus sylvestris are associated with precipitation and temperature along a climatic gradient in Europe

    Article • New Phytologist, November 2020, Wiley

    Tanja Pyhäjärvi

  25. Long-Term Reciprocal Gene Flow in Wild and Domestic Geese Reveals Complex Domestication History

    Article • G3 Genes Genomes Genetics, September 2020, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  26. Genomics of Clinal Local Adaptation in Pinus sylvestris Under Continuous Environmental and Spatial Genetic Setting

    Article • G3 Genes Genomes Genetics, August 2020, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  27. 275 years of forestry meets genomics in Pinus sylvestris

    Article • Evolutionary Applications, June 2019, Wiley

    Tanja Pyhäjärvi

  28. Early and late flowering gene expression patterns in maize

    Article • Peer Community in Evolutionary Biology, June 2019, Peer Community In

    Tanja Pyhäjärvi

  29. Relationship between wild greylag and European domestic geese based on mitochondrial DNA

    Article • Animal Genetics, June 2015, Wiley

    Tanja Pyhäjärvi

  30. Natural variation in teosinte at the domestication locusteosinte branched1(tb1)

    Article • PeerJ, April 2015, PeerJ

    Tanja Pyhäjärvi

  31. A recent local sweep at thePHYAlocus in the Northern European Spiterstulen population ofArabidopsis lyrata

    Article • Molecular Ecology, February 2014, Wiley

    Tanja Pyhäjärvi

  32. Balancing selection and heterozygote advantage in major histocompatibility complex loci of the bottlenecked Finnish wolf population

    Article • Molecular Ecology, January 2014, Wiley

    Dr Hannes Lohi, Tanja Pyhäjärvi

  33. Complex Patterns of Local Adaptation in Teosinte

    Article • Genome Biology and Evolution, July 2013, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  34. The Genomic Signature of Crop-Wild Introgression in Maize

    Article • PLoS Genetics, May 2013, PLOS

    Tanja Pyhäjärvi

  35. Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays

    Article • Heredity, February 2013, Springer Science + Business Media

    Tanja Pyhäjärvi

  36. Teosinte as a model system for population and ecological genomics

    Article • Trends in Genetics, December 2012, Elsevier

    Tanja Pyhäjärvi

  37. Time scales of divergence and speciation among natural populations and subspecies ofArabidopsis lyrata(Brassicaceae)

    Article • American Journal of Botany, August 2012, Wiley

    Tanja Pyhäjärvi

  38. Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

    Article • Genetics, July 2012, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  39. Maize HapMap2 identifies extant variation from a genome in flux

    Article • Nature Genetics, June 2012, Nature

    Professor Shawn Kaeppler, Tanja Pyhäjärvi

  40. Comparative population genomics of maize domestication and improvement

    Article • Nature Genetics, June 2012, Nature

    Professor Shawn Kaeppler, Tanja Pyhäjärvi

  41. Adaptive Potential of Northernmost Tree Populations to Climate Change, with Emphasis on Scots Pine (Pinus sylvestris L.)

    Article • Journal of Heredity, June 2011, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  42. Selection on Nuclear Genes in a Pinus Phylogeny

    Article • Molecular Biology and Evolution, January 2009, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  43. Demographic History Has Influenced Nucleotide Diversity in European Pinus sylvestris Populations

    Article • Genetics, November 2007, Oxford University Press (OUP)

    Tanja Pyhäjärvi

  44. Genomic diversity in forest trees

    Article • Current Opinion in Plant Biology, April 2007, Elsevier

    Tanja Pyhäjärvi