All Stories

  1. Infrastructure for synthetic health data

    Article • July 2023, Center for Open Science

    Matúš Kalaš

  2. The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity

    Article • F1000Research, May 2023, Faculty of 1000, Ltd.

    Matúš Kalaš

  3. The future of food and nutrition in ELIXIR

    Article • F1000Research, August 2022, Faculty of 1000, Ltd.

    Matúš Kalaš, Dr John M Hancock

  4. BioSimulators: a central registry of simulation engines and services for recommending specific tools

    Article • Nucleic Acids Research, May 2022, Oxford University Press (OUP)

    Matúš Kalaš

  5. Galaxy: A Decade of Realising CWFR Concepts

    Article • Data Intelligence, January 2022, The MIT Press

    Matúš Kalaš

  6. Perspectives on automated composition of workflows in the life sciences

    Article • F1000Research, September 2021, Faculty of 1000, Ltd.

    Matúš Kalaš

  7. Bioimage analysis workflows: community resources to navigate through a complex ecosystem

    Article • F1000Research, April 2021, Faculty of 1000, Ltd.

    Matúš Kalaš

  8. biotoolsSchema: a formalized schema for bioinformatics software description

    Article • GigaScience, January 2021, Oxford University Press (OUP)

    Matúš Kalaš

  9. Community curation of bioinformatics software and data resources

    Article • Briefings in Bioinformatics, October 2019, Oxford University Press (OUP)

    Dr John M Hancock, Matúš Kalaš

  10. The bio.tools registry of software tools and data resources for the life sciences

    Article • August 2019, Springer Science + Business Media

    Mr Rafael C Jimenez, Matúš Kalaš

  11. Norwegian e-Infrastructure for Life Sciences (NeLS)

    Article • F1000Research, June 2018, Faculty of 1000, Ltd.

    Erik Hjerde, Prof Nils Peder Willassen, Matúš Kalaš

  12. Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis

    Article • Data Science and Engineering, September 2017, Springer Science + Business Media

    Matúš Kalaš

  13. ReGaTE: Registration of Galaxy Tools in Elixir

    Article • GigaScience, April 2017, Oxford University Press (OUP)

    Björn Grüning, Matúš Kalaš

  14. Tools and data services registry: a community effort to document bioinformatics resources

    Article • Nucleic Acids Research, November 2015, Oxford University Press (OUP)

    Mr Rafael C Jimenez, Björn Grüning, Dr Tunca Dogan, Matúš Kalaš

  15. Using registries to integrate bioinformatics tools and services into workbench environments

    Article • International Journal on Software Tools for Technology Transfer, July 2015, Springer Science + Business Media

    Matúš Kalaš

  16. Community-driven development for computational biology at Sprints, Hackathons and Codefests

    Article • BMC Bioinformatics, November 2014, Springer Science + Business Media

    Matúš Kalaš

  17. FreeContact: fast and free software for protein contact prediction from residue co-evolution

    Article • BMC Bioinformatics, March 2014, Springer Science + Business Media

    Matúš Kalaš

  18. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

    Article • Journal of Biomedical Semantics, January 2014, Springer Science + Business Media

    Matúš Kalaš

  19. Sprints, Hackathons and Codefests as community gluons in computational biology

    Article • EMBnet journal, October 2013, EMBnet Stichting

    Matúš Kalaš

  20. The Genomic HyperBrowser: an analysis web server for genome-scale data

    Article • Nucleic Acids Research, April 2013, Oxford University Press (OUP)

    Matúš Kalaš

  21. EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

    Article • Bioinformatics, March 2013, Oxford University Press (OUP)

    Matúš Kalaš

  22. Workshop on laboratory protocol standards for the molecular methods database

    Article • New Biotechnology, January 2013, Elsevier

    Matúš Kalaš

  23. Identifying elemental genomic track types and representing them uniformly

    Article • BMC Bioinformatics, December 2011, Springer Science + Business Media

    Matúš Kalaš

  24. Interoperable Semantic Web services (Tutorials)

    Article • Nature Precedings, January 2011, Springer Science + Business Media

    Matúš Kalaš

  25. Interoperable Semantic Web services (Tutorials)

    Article • Nature Precedings, January 2011, Springer Science + Business Media

    Matúš Kalaš

  26. BioXSD: the common data-exchange format for everyday bioinformatics web services

    Article • Bioinformatics, September 2010, Oxford University Press (OUP)

    Matúš Kalaš

  27. The EMBRACE web service collection

    Article • Nucleic Acids Research, May 2010, Oxford University Press (OUP)

    Matúš Kalaš