All Stories

  1. Combined in vitro and cell‐based selection display method producing specific binders against IL ‐9 receptor in high yields

    Article • FEBS Journal, January 2023, Wiley

    Dr Lada Biedermannová

  2. Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks

    Article • Acta Crystallographica Section D Structural Biology, July 2022, International Union of Crystallography

    Dr Lada Biedermannová

  3. Continuous Diastereomeric Kinetic Resolution—Silybins A and B

    Article • Catalysts, September 2021, MDPI AG

    Dr Lada Biedermannová

  4. Flavonolignans from silymarin do not intercalate into DNA : Rebuttal of data published in the paper J. Mol. Recognit . e2812 (2019)

    Article • Journal of Molecular Recognition, February 2021, Wiley

    Dr Lada Biedermannová

  5. Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution

    Article • Viruses, January 2021, MDPI AG

    Dr Lada Biedermannová

  6. Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org

    Article • Acta Crystallographica Section D Structural Biology, August 2020, International Union of Crystallography

    Dr Lada Biedermannová

  7. Rutinosidase from Aspergillus niger : crystal structure and insight into the enzymatic activity

    Article • FEBS Journal, January 2020, Wiley

    Dr Lada Biedermannová

  8. WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations

    Article • Physical Chemistry Chemical Physics, January 2017, Royal Society of Chemistry

    Dr Lada Biedermannová

  9. Hydration of proteins and nucleic acids: Advances in experiment and theory. A review

    Article • Biochimica et Biophysica Acta (BBA) - General Subjects, September 2016, Elsevier

    Dr Lada Biedermannová

  10. Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures

    Article • Acta Crystallographica Section D Biological Crystallography, October 2015, International Union of Crystallography

    Dr Lada Biedermannová

  11. Redesigning Protein Cavities as a Strategy for Increasing Affinity in Protein-Protein Interaction: Interferon-γReceptor 1 as a Model

    Article • BioMed Research International, January 2015, Hindawi Publishing Corporation

    Dr Lada Biedermannová

  12. Mechanistic Dichotomy in the Asymmetric Allylation of Aldehydes with Allyltrichlorosilanes Catalyzed by Chiral Pyridine N‐Oxides

    Article • Chemistry - A European Journal, June 2013, Wiley

    Dr Lada Biedermannová

  13. Increasing Affinity of Interferon-γReceptor 1 to Interferon-

    Article • BioMed Research International, January 2013, Hindawi Publishing Corporation

    Dr Lada Biedermannová, Prof. Bohdan Schneider

  14. Software tools for identification, visualization and analysis of protein tunnels and channels

    Article • Biotechnology Advances, January 2013, Elsevier

    Dr Lada Biedermannová

  15. CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

    Article • PLoS Computational Biology, October 2012, PLOS

    Dr Lada Biedermannová

  16. A Single Mutation in a Tunnel to the Active Site Changes the Mechanism and Kinetics of Product Release in Haloalkane Dehalogenase LinB

    Article • Journal of Biological Chemistry, June 2012, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Lada Biedermannová

  17. Novel high‐affinity binders of human interferon gamma derived from albumin‐binding domain of protein G

    Article • Proteins Structure Function and Bioinformatics, November 2011, Wiley

    Dr Lada Biedermannová

  18. MedusaScore: An Accurate Force Field-Based Scoring Function for Virtual Drug Screening

    Article • Journal of Chemical Information and Modeling, August 2008, American Chemical Society (ACS)

    Professor Nikolay V Dokholyan, Dr Lada Biedermannová

  19. On the Mechanism of Asymmetric Allylation of Aldehydes with Allyltrichlorosilanes Catalyzed by QUINOX, a Chiral Isoquinoline N-Oxide

    Article • Journal of the American Chemical Society, March 2008, American Chemical Society (ACS)

    Dr Lada Biedermannová

  20. Identifying stabilizing key residues in proteins using interresidue interaction energy matrix

    Article • Proteins Structure Function and Bioinformatics, January 2008, Wiley

    Dr Lada Biedermannová

  21. Another role of proline: stabilization interactions in proteins and protein complexes concerning proline and tryptophane

    Article • Physical Chemistry Chemical Physics, January 2008, Royal Society of Chemistry

    Dr Lada Biedermannová

  22. Model of Peptide Bond−Aromatic Ring Interaction:  Correlated Ab Initio Quantum Chemical Study

    Article • The Journal of Physical Chemistry B, August 2007, American Chemical Society (ACS)

    Dr Lada Biedermannová

  23. Remote Chiral Induction in the Organocatalytic Hydrosilylation of Aromatic Ketones and Ketimines

    Article • Angewandte Chemie International Edition, February 2006, Wiley

    Dr Lada Biedermannová

  24. Unexpectedly Strong Energy Stabilization Inside the Hydrophobic Core of Small Protein Rubredoxin Mediated by Aromatic Residues:  Correlated Ab Initio Quantum Chemical Calculations

    Article • Journal of the American Chemical Society, February 2005, American Chemical Society (ACS)

    Dr Lada Biedermannová

  25. Article • American Chemical Society (ACS)

    Dr Lada Biedermannová